CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = C197F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6197C197FC3766FnonsyntGctTc77989779730.99979511561-11563
ORF1ab/nsp6197C197FC3766FnonsyntGCtTT77989160.00020515711561-11563

Details of the mutation C197F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6197C197FtGctTc7797377989All0.014913
ORF1ab/nsp6197C197FtGCtTT1677989All0.000003
ORF1ab/nsp6197C197FtGctTc7076070771AY.250.425609
ORF1ab/nsp6197C197FtGCtTT1170771AY.250.000066
ORF1ab/nsp6197C197FtGctTc49614961AY.40.007721
ORF1ab/nsp6197C197FtGctTc579579B.1.617.20.00218
ORF1ab/nsp6197C197FtGctTc398398AY.3.10.033933
ORF1ab/nsp6197C197FtGctTc224224AY.1130.031895
ORF1ab/nsp6197C197FtGctTc182182AY.390.004497
ORF1ab/nsp6197C197FtGctTc8686AY.430.000381
ORF1ab/nsp6197C197FtGctTc8282AY.440.000499
ORF1ab/nsp6197C197FtGctTc7878AY.1200.0029
ORF1ab/nsp6197C197FtGctTc4242AY.510.038182
ORF1ab/nsp6197C197FtGctTc3737AY.470.001151
ORF1ab/nsp6197C197FtGctTc3737AY.920.010629
ORF1ab/nsp6197C197FtGctTc2929AY.1030.00018
ORF1ab/nsp6197C197FtGctTc2828AY.1170.002366
ORF1ab/nsp6197C197FtGctTc2727AY.230.001883
ORF1ab/nsp6197C197FtGctTc2525AY.1190.000883
ORF1ab/nsp6197C197FtGctTc2121AY.46.60.001516
ORF1ab/nsp6197C197FtGctTc2020AY.460.002082
ORF1ab/nsp6197C197FtGctTc2020B.1.1.70.000018
ORF1ab/nsp6197C197FtGctTc1919AY.420.000764
ORF1ab/nsp6197C197FtGctTc1919B.10.000174
ORF1ab/nsp6197C197FtGctTc1717AY.980.001343
ORF1ab/nsp6197C197FtGctTc1616AY.410.004703
ORF1ab/nsp6197C197FtGctTc1414AY.990.01469
ORF1ab/nsp6197C197FtGctTc1414B0.001789
ORF1ab/nsp6197C197FtGctTc1313AY.1020.000345
ORF1ab/nsp6197C197FtGctTc1212P.10.000189
ORF1ab/nsp6197C197FtGctTc1111AY.260.000311
ORF1ab/nsp6197C197FtGctTc1111AY.450.001339
ORF1ab/nsp6197C197FtGctTc1010AY.50.000206
ORF1ab/nsp6197C197FtGctTc1010AY.750.00056
ORF1ab/nsp6197C197FtGctTc590.277778
ORF1ab/nsp6197C197FtGCtTT490.222222
ORF1ab/nsp6197C197FtGctTc99AY.30.00009
ORF1ab/nsp6197C197FtGctTc88AY.46.40.001316
ORF1ab/nsp6197C197FtGctTc66AY.1090.004438
ORF1ab/nsp6197C197FtGctTc66AY.820.008141
ORF1ab/nsp6197C197FtGctTc66B.1.20.000053
ORF1ab/nsp6197C197FtGctTc55B.1.2400.001078
ORF1ab/nsp6197C197FtGctTc55B.1.4290.000118
ORF1ab/nsp6197C197FtGctTc44AY.1080.00441
ORF1ab/nsp6197C197FtGctTc44AY.200.000155
ORF1ab/nsp6197C197FtGctTc44AY.330.000267
ORF1ab/nsp6197C197FtGctTc44AY.5.40.001107
ORF1ab/nsp6197C197FtGctTc44AY.670.001857
ORF1ab/nsp6197C197FtGctTc44AY.910.002922
ORF1ab/nsp6197C197FtGctTc44AY.99.20.000369
ORF1ab/nsp6197C197FtGctTc33AY.1010.001471
ORF1ab/nsp6197C197FtGctTc33AY.46.10.00308
ORF1ab/nsp6197C197FtGctTc33AY.46.20.001906
ORF1ab/nsp6197C197FtGctTc33AY.620.001307
ORF1ab/nsp6197C197FtGctTc33AY.930.000819
ORF1ab/nsp6197C197FtGctTc23B.1.2210.000142
ORF1ab/nsp6197C197FtGCtTT13B.1.2210.000071
ORF1ab/nsp6197C197FtGctTc33B.1.3510.000089
ORF1ab/nsp6197C197FtGctTc33B.1.5960.000261
ORF1ab/nsp6197C197FtGctTc22AU.30.004219
ORF1ab/nsp6197C197FtGctTc22AY.1000.000092
ORF1ab/nsp6197C197FtGctTc22AY.1100.000225
ORF1ab/nsp6197C197FtGctTc22AY.1180.000125
ORF1ab/nsp6197C197FtGctTc22AY.140.000176
ORF1ab/nsp6197C197FtGctTc22AY.170.016393
ORF1ab/nsp6197C197FtGctTc22AY.190.002281
ORF1ab/nsp6197C197FtGctTc22AY.270.000129
ORF1ab/nsp6197C197FtGctTc22AY.34.10.00102
ORF1ab/nsp6197C197FtGctTc22AY.5.30.000675
ORF1ab/nsp6197C197FtGctTc22AY.580.001815
ORF1ab/nsp6197C197FtGctTc22AY.610.00021
ORF1ab/nsp6197C197FtGctTc22AY.840.000875
ORF1ab/nsp6197C197FtGctTc22AY.9.20.000073
ORF1ab/nsp6197C197FtGctTc22B.1.1770.000026
ORF1ab/nsp6197C197FtGctTc22B.1.2430.000139
ORF1ab/nsp6197C197FtGctTc22B.1.5230.004902
ORF1ab/nsp6197C197FtGctTc22B.1.5640.000852
ORF1ab/nsp6197C197FtGctTc11A.2.5.20.001572
ORF1ab/nsp6197C197FtGctTc11AY.1060.000335
ORF1ab/nsp6197C197FtGctTc11AY.1140.000231
ORF1ab/nsp6197C197FtGctTc11AY.1160.000287
ORF1ab/nsp6197C197FtGctTc11AY.130.000161
ORF1ab/nsp6197C197FtGctTc11AY.290.000016
ORF1ab/nsp6197C197FtGctTc11AY.320.000532
ORF1ab/nsp6197C197FtGctTc11AY.4.2.10.000149
ORF1ab/nsp6197C197FtGctTc11AY.4.30.000842
ORF1ab/nsp6197C197FtGctTc11AY.4.40.000409
ORF1ab/nsp6197C197FtGctTc11AY.540.000095
ORF1ab/nsp6197C197FtGctTc11AY.590.00053
ORF1ab/nsp6197C197FtGctTc11AY.700.000209
ORF1ab/nsp6197C197FtGctTc11AY.720.001361
ORF1ab/nsp6197C197FtGctTc11AY.730.000665
ORF1ab/nsp6197C197FtGctTc11AY.75.10.00018
ORF1ab/nsp6197C197FtGctTc11AY.770.001127
ORF1ab/nsp6197C197FtGctTc11AY.90.000068
ORF1ab/nsp6197C197FtGctTc11AY.950.000761
ORF1ab/nsp6197C197FtGctTc11AY.98.10.000048
ORF1ab/nsp6197C197FtGctTc11B.1.10.000018
ORF1ab/nsp6197C197FtGctTc11B.1.1.2070.001182
ORF1ab/nsp6197C197FtGctTc11B.1.1.2650.003155
ORF1ab/nsp6197C197FtGctTc11B.1.1.5190.00004
ORF1ab/nsp6197C197FtGctTc11B.1.4590.004082
ORF1ab/nsp6197C197FtGctTc11B.1.4700.001404
ORF1ab/nsp6197C197FtGctTc11B.1.4970.000315
ORF1ab/nsp6197C197FtGctTc11B.1.5250.000113
ORF1ab/nsp6197C197FtGctTc11B.1.5680.001111
ORF1ab/nsp6197C197FtGctTc11B.1.617.10.000129
ORF1ab/nsp6197C197FtGctTc11B.1.6270.00202
ORF1ab/nsp6197C197FtGctTc11B.530.011765
ORF1ab/nsp6197C197FtGctTc11D.20.000075
ORF1ab/nsp6197C197FtGctTc11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.