CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = A54S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp654A54SA3623SnonsynGctTct94379437111132-11134

Details of the mutation A54S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp654A54SGctTct94379437All0.001805
ORF1ab/nsp654A54SGctTct67516751B.1.1770.088894
ORF1ab/nsp654A54SGctTct15191519B.1.177.150.95836
ORF1ab/nsp654A54SGctTct164164B.1.177.141
ORF1ab/nsp654A54SGctTct136136AA.10.985507
ORF1ab/nsp654A54SGctTct128128AA.20.984615
ORF1ab/nsp654A54SGctTct110110AA.41
ORF1ab/nsp654A54SGctTct109109AA.71
ORF1ab/nsp654A54SGctTct103103B.1.177.781
ORF1ab/nsp654A54SGctTct6262AA.51
ORF1ab/nsp654A54SGctTct6161AA.60.983871
ORF1ab/nsp654A54SGctTct5858B.10.000531
ORF1ab/nsp654A54SGctTct4545AA.81
ORF1ab/nsp654A54SGctTct3737AA.31
ORF1ab/nsp654A54SGctTct3232B.1.160.300.095238
ORF1ab/nsp654A54SGctTct1818B.1.1600.000561
ORF1ab/nsp654A54SGctTct1010B.1.10.000181
ORF1ab/nsp654A54SGctTct88B.1.177.440.004152
ORF1ab/nsp654A54SGctTct77B.1.177.690.010386
ORF1ab/nsp654A54SGctTct66B.1.177.620.007151
ORF1ab/nsp654A54SGctTct55B.1.2360.010267
ORF1ab/nsp654A54SGctTct44B.1.177.310.045977
ORF1ab/nsp654A54SGctTct44B.1.2210.000284
ORF1ab/nsp654A54SGctTct33B0.000383
ORF1ab/nsp654A54SGctTct33B.1.177.570.000843
ORF1ab/nsp654A54SGctTct33B.1.177.650.001996
ORF1ab/nsp654A54SGctTct33B.1.177.750.003122
ORF1ab/nsp654A54SGctTct22AY.140.000176
ORF1ab/nsp654A54SGctTct22AY.300.000791
ORF1ab/nsp654A54SGctTct22B.1.1.70.000002
ORF1ab/nsp654A54SGctTct22B.1.177.40.000422
ORF1ab/nsp654A54SGctTct22B.1.177.400.010309
ORF1ab/nsp654A54SGctTct22B.1.177.430.002954
ORF1ab/nsp654A54SGctTct22B.1.177.540.001213
ORF1ab/nsp654A54SGctTct22B.1.177.70.00033
ORF1ab/nsp654A54SGctTct22B.1.177.860.000367
ORF1ab/nsp654A54SGctTct22B.1.20.000018
ORF1ab/nsp654A54SGctTct22B.1.2220.003384
ORF1ab/nsp654A54SGctTct11AD.20.000219
ORF1ab/nsp654A54SGctTct11AY.1200.000037
ORF1ab/nsp654A54SGctTct11AY.40.000002
ORF1ab/nsp654A54SGctTct11AY.440.000006
ORF1ab/nsp654A54SGctTct11AY.50.000021
ORF1ab/nsp654A54SGctTct11B.1.1.3150.008475
ORF1ab/nsp654A54SGctTct11B.1.1.390.00051
ORF1ab/nsp654A54SGctTct11B.1.1.700.000341
ORF1ab/nsp654A54SGctTct11B.1.160.200.008929
ORF1ab/nsp654A54SGctTct11B.1.160.280.002924
ORF1ab/nsp654A54SGctTct11B.1.160.90.007194
ORF1ab/nsp654A54SGctTct11B.1.177.210.000076
ORF1ab/nsp654A54SGctTct11B.1.177.60.000977
ORF1ab/nsp654A54SGctTct11B.1.177.730.000566
ORF1ab/nsp654A54SGctTct11B.1.177.770.000726
ORF1ab/nsp654A54SGctTct11B.1.177.830.001481
ORF1ab/nsp654A54SGctTct11B.1.3620.001541
ORF1ab/nsp654A54SGctTct11B.1.3750.00082
ORF1ab/nsp654A54SGctTct11B.1.4160.001269
ORF1ab/nsp654A54SGctTct11B.1.416.10.001563
ORF1ab/nsp654A54SGctTct11B.1.6000.005848
ORF1ab/nsp654A54SGctTct11B.1.617.20.000004
ORF1ab/nsp654A54SGctTct11B.1.780.008547
ORF1ab/nsp654A54SGctTct11P.10.000016
ORF1ab/nsp654A54SGctTct11Q.10.000126
ORF1ab/nsp654A54SGctTct11Z.10.00289