CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = A54A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp654A54AA3623AsyngcTgcC6985120.73352411132-11134
ORF1ab/nsp654A54AA3623AsyngcTgcA6981620.23209211132-11134
ORF1ab/nsp654A54AA3623AsyngcTgcG698240.03438411132-11134

Details of the mutation A54A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp654A54AgcTgcC512698All0.000098
ORF1ab/nsp654A54AgcTgcA162698All0.000031
ORF1ab/nsp654A54AgcTgcG24698All0.000005
ORF1ab/nsp654A54AgcTgcC281281B.1.1.2580.915309
ORF1ab/nsp654A54AgcTgcA9194B.1.617.20.000343
ORF1ab/nsp654A54AgcTgcG294B.1.617.20.000008
ORF1ab/nsp654A54AgcTgcC194B.1.617.20.000004
ORF1ab/nsp654A54AgcTgcA4950AY.350.011419
ORF1ab/nsp654A54AgcTgcC150AY.350.000233
ORF1ab/nsp654A54AgcTgcC4848B.10.00044
ORF1ab/nsp654A54AgcTgcC2730AY.40.000042
ORF1ab/nsp654A54AgcTgcG330AY.40.000005
ORF1ab/nsp654A54AgcTgcC1923B.1.1.70.000017
ORF1ab/nsp654A54AgcTgcG323B.1.1.70.000003
ORF1ab/nsp654A54AgcTgcA123B.1.1.70.000001
ORF1ab/nsp654A54AgcTgcC2323B.1.177.720.077966
ORF1ab/nsp654A54AgcTgcC1515C.340.555556
ORF1ab/nsp654A54AgcTgcC811B.1.20.00007
ORF1ab/nsp654A54AgcTgcG311B.1.20.000026
ORF1ab/nsp654A54AgcTgcC1010B.1.1770.000132
ORF1ab/nsp654A54AgcTgcG88AY.260.000226
ORF1ab/nsp654A54AgcTgcC66AY.29.10.001323
ORF1ab/nsp654A54AgcTgcC66B.1.5760.00544
ORF1ab/nsp654A54AgcTgcC66B.1.5960.000523
ORF1ab/nsp654A54AgcTgcA55AY.16.10.00235
ORF1ab/nsp654A54AgcTgcC55D.20.000375
ORF1ab/nsp654A54AgcTgcC34AY.440.000018
ORF1ab/nsp654A54AgcTgcA14AY.440.000006
ORF1ab/nsp654A54AgcTgcC33AY.1030.000019
ORF1ab/nsp654A54AgcTgcC33AY.250.000018
ORF1ab/nsp654A54AgcTgcA33AY.480.001395
ORF1ab/nsp654A54AgcTgcC33B.1.4290.000071
ORF1ab/nsp654A54AgcTgcC33B.1.5950.000783
ORF1ab/nsp654A54AgcTgcC12AY.230.00007
ORF1ab/nsp654A54AgcTgcA12AY.230.00007
ORF1ab/nsp654A54AgcTgcC22B0.000256
ORF1ab/nsp654A54AgcTgcC22B.1.10.000036
ORF1ab/nsp654A54AgcTgcC22B.1.1.2200.003717
ORF1ab/nsp654A54AgcTgcC22B.1.2430.000139
ORF1ab/nsp654A54AgcTgcC22B.1.2890.005319
ORF1ab/nsp654A54AgcTgcC22B.1.3510.000059
ORF1ab/nsp654A54AgcTgcC22B.1.4270.000101
ORF1ab/nsp654A54AgcTgcC22B.1.5820.000981
ORF1ab/nsp654A54AgcTgcG22B.1.6370.000146
ORF1ab/nsp654A54AgcTgcC11A.20.000662
ORF1ab/nsp654A54AgcTgcC11A.2.20.001689
ORF1ab/nsp654A54AgcTgcC11AU.20.002421
ORF1ab/nsp654A54AgcTgcA11AY.190.00114
ORF1ab/nsp654A54AgcTgcC11AY.30.00001
ORF1ab/nsp654A54AgcTgcC11AY.330.000067
ORF1ab/nsp654A54AgcTgcC11AY.39.10.00004
ORF1ab/nsp654A54AgcTgcG11AY.430.000004
ORF1ab/nsp654A54AgcTgcA11AY.450.000122
ORF1ab/nsp654A54AgcTgcA11AY.470.000031
ORF1ab/nsp654A54AgcTgcA11AY.50.000021
ORF1ab/nsp654A54AgcTgcA11AY.540.000095
ORF1ab/nsp654A54AgcTgcA11AY.550.000917
ORF1ab/nsp654A54AgcTgcC11AY.610.000105
ORF1ab/nsp654A54AgcTgcC11AY.710.000475
ORF1ab/nsp654A54AgcTgcA11AY.9.20.000037
ORF1ab/nsp654A54AgcTgcC11B.1.1.1710.003676
ORF1ab/nsp654A54AgcTgcA11B.1.1.250.000569
ORF1ab/nsp654A54AgcTgcC11B.1.1.290.010309
ORF1ab/nsp654A54AgcTgcC11B.1.1.3770.001381
ORF1ab/nsp654A54AgcTgcC11B.1.1.5190.00004
ORF1ab/nsp654A54AgcTgcC11B.1.177.120.000152
ORF1ab/nsp654A54AgcTgcC11B.1.177.450.000381
ORF1ab/nsp654A54AgcTgcC11B.1.177.70.000165
ORF1ab/nsp654A54AgcTgcC11B.1.2060.000816
ORF1ab/nsp654A54AgcTgcA11B.1.2210.000071
ORF1ab/nsp654A54AgcTgcC11B.1.2370.004975
ORF1ab/nsp654A54AgcTgcA11B.1.3320.003497
ORF1ab/nsp654A54AgcTgcC11B.1.5170.000427
ORF1ab/nsp654A54AgcTgcC11B.1.5260.000024
ORF1ab/nsp654A54AgcTgcC11B.1.5640.000426
ORF1ab/nsp654A54AgcTgcC11B.1.5690.014493
ORF1ab/nsp654A54AgcTgcC11B.1.6230.000536
ORF1ab/nsp654A54AgcTgcG11B.1.6270.00202
ORF1ab/nsp654A54AgcTgcC11B.400.000364
ORF1ab/nsp654A54AgcTgcG11P.10.000016
ORF1ab/nsp654A54AgcTgcC11P.1.100.000269
ORF1ab/nsp654A54AgcTgcA11P.1.20.001156

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.