CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = A41A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp641A41AA3610AsyngcCgcT574754550.94919111093-11095
ORF1ab/nsp641A41AA3610AsyngcCgcA57472330.040542911093-11095
ORF1ab/nsp641A41AA3610AsyngcCgcG5747590.010266211093-11095

Details of the mutation A41A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp641A41AgcCgcT54555747All0.001043
ORF1ab/nsp641A41AgcCgcA2335747All0.000045
ORF1ab/nsp641A41AgcCgcG595747All0.000011
ORF1ab/nsp641A41AgcCgcT30043004AY.120.10.964366
ORF1ab/nsp641A41AgcCgcT370427B.1.1.70.000331
ORF1ab/nsp641A41AgcCgcA57427B.1.1.70.000051
ORF1ab/nsp641A41AgcCgcT202306AY.40.000314
ORF1ab/nsp641A41AgcCgcA57306AY.40.000089
ORF1ab/nsp641A41AgcCgcG47306AY.40.000073
ORF1ab/nsp641A41AgcCgcT222222B.1.5260.005218
ORF1ab/nsp641A41AgcCgcT189196B.1.617.20.000712
ORF1ab/nsp641A41AgcCgcA6196B.1.617.20.000023
ORF1ab/nsp641A41AgcCgcG1196B.1.617.20.000004
ORF1ab/nsp641A41AgcCgcT115128B.10.001053
ORF1ab/nsp641A41AgcCgcA13128B.10.000119
ORF1ab/nsp641A41AgcCgcT124124B.1.258.170.012892
ORF1ab/nsp641A41AgcCgcT116118AY.250.000698
ORF1ab/nsp641A41AgcCgcG1118AY.250.000006
ORF1ab/nsp641A41AgcCgcA1118AY.250.000006
ORF1ab/nsp641A41AgcCgcT90100AY.430.000399
ORF1ab/nsp641A41AgcCgcA10100AY.430.000044
ORF1ab/nsp641A41AgcCgcT8394AY.440.000505
ORF1ab/nsp641A41AgcCgcA1094AY.440.000061
ORF1ab/nsp641A41AgcCgcG194AY.440.000006
ORF1ab/nsp641A41AgcCgcT8790B.1.20.000766
ORF1ab/nsp641A41AgcCgcA390B.1.20.000026
ORF1ab/nsp641A41AgcCgcT5966B.1.1600.00184
ORF1ab/nsp641A41AgcCgcG766B.1.1600.000218
ORF1ab/nsp641A41AgcCgcT5456P.10.000851
ORF1ab/nsp641A41AgcCgcA256P.10.000032
ORF1ab/nsp641A41AgcCgcT2342B.1.10.000417
ORF1ab/nsp641A41AgcCgcA1942B.1.10.000345
ORF1ab/nsp641A41AgcCgcT2727B.1.2580.001797
ORF1ab/nsp641A41AgcCgcT2126AY.1030.00013
ORF1ab/nsp641A41AgcCgcA526AY.1030.000031
ORF1ab/nsp641A41AgcCgcT2424B.1.1770.000316
ORF1ab/nsp641A41AgcCgcT2223AY.1020.000583
ORF1ab/nsp641A41AgcCgcA123AY.1020.000027
ORF1ab/nsp641A41AgcCgcT1823AY.390.000445
ORF1ab/nsp641A41AgcCgcA523AY.390.000124
ORF1ab/nsp641A41AgcCgcT2323AY.4.20.000499
ORF1ab/nsp641A41AgcCgcT2020B.1.1470.015117
ORF1ab/nsp641A41AgcCgcT1919B.1.177.600.00415
ORF1ab/nsp641A41AgcCgcT1515B.1.2210.001065
ORF1ab/nsp641A41AgcCgcT1515B.1.4970.004721
ORF1ab/nsp641A41AgcCgcT1314AY.470.000404
ORF1ab/nsp641A41AgcCgcA114AY.470.000031
ORF1ab/nsp641A41AgcCgcT914AY.50.000186
ORF1ab/nsp641A41AgcCgcA514AY.50.000103
ORF1ab/nsp641A41AgcCgcA914B.1.1.630.003472
ORF1ab/nsp641A41AgcCgcT514B.1.1.630.001929
ORF1ab/nsp641A41AgcCgcT1414B.1.5960.00122
ORF1ab/nsp641A41AgcCgcT1214B.1.6210.001062
ORF1ab/nsp641A41AgcCgcA214B.1.6210.000177
ORF1ab/nsp641A41AgcCgcT1313AY.30.000129
ORF1ab/nsp641A41AgcCgcT1313AY.330.000868
ORF1ab/nsp641A41AgcCgcT1313AY.550.011927
ORF1ab/nsp641A41AgcCgcT1313B.1.177.820.006205
ORF1ab/nsp641A41AgcCgcT1111AY.1000.000506
ORF1ab/nsp641A41AgcCgcT1111AY.260.000311
ORF1ab/nsp641A41AgcCgcT1111B.1.1.40.032738
ORF1ab/nsp641A41AgcCgcT1111B.1.177.320.014845
ORF1ab/nsp641A41AgcCgcT910AY.200.00035
ORF1ab/nsp641A41AgcCgcA110AY.200.000039
ORF1ab/nsp641A41AgcCgcT1010AY.39.10.000396
ORF1ab/nsp641A41AgcCgcT1010AY.980.00079
ORF1ab/nsp641A41AgcCgcT88AY.1190.000282
ORF1ab/nsp641A41AgcCgcT88AY.290.000126
ORF1ab/nsp641A41AgcCgcT88B.1.1.2530.02005
ORF1ab/nsp641A41AgcCgcT88B.1.1.2730.054054
ORF1ab/nsp641A41AgcCgcT88B.1.1.3110.002865
ORF1ab/nsp641A41AgcCgcT77AY.1180.000439
ORF1ab/nsp641A41AgcCgcT57AY.750.00028
ORF1ab/nsp641A41AgcCgcA27AY.750.000112
ORF1ab/nsp641A41AgcCgcT77B.1.1.2160.006233
ORF1ab/nsp641A41AgcCgcT77B.1.36.180.002941
ORF1ab/nsp641A41AgcCgcT66AY.1130.000854
ORF1ab/nsp641A41AgcCgcT66B.1.3960.004234
ORF1ab/nsp641A41AgcCgcT66B.1.4270.000303
ORF1ab/nsp641A41AgcCgcT56B.1.617.10.000645
ORF1ab/nsp641A41AgcCgcA16B.1.617.10.000129
ORF1ab/nsp641A41AgcCgcT66B.1.6370.000438
ORF1ab/nsp641A41AgcCgcT55AY.46.20.003177
ORF1ab/nsp641A41AgcCgcT45AY.610.000419
ORF1ab/nsp641A41AgcCgcA15AY.610.000105
ORF1ab/nsp641A41AgcCgcT45B.1.3510.000119
ORF1ab/nsp641A41AgcCgcA15B.1.3510.00003
ORF1ab/nsp641A41AgcCgcT44AY.1170.000338
ORF1ab/nsp641A41AgcCgcT34AY.140.000264
ORF1ab/nsp641A41AgcCgcA14AY.140.000088
ORF1ab/nsp641A41AgcCgcT44AY.270.000259
ORF1ab/nsp641A41AgcCgcT44AY.5.40.001107
ORF1ab/nsp641A41AgcCgcT44AY.740.000463
ORF1ab/nsp641A41AgcCgcA44AY.820.005427
ORF1ab/nsp641A41AgcCgcT44AY.9.20.000147
ORF1ab/nsp641A41AgcCgcT44B.1.1.2200.007435
ORF1ab/nsp641A41AgcCgcT44B.1.1.280.001245
ORF1ab/nsp641A41AgcCgcT44B.1.36.170.001976
ORF1ab/nsp641A41AgcCgcT44B.1.4290.000094
ORF1ab/nsp641A41AgcCgcT44P.1.140.000191
ORF1ab/nsp641A41AgcCgcT33AY.1200.000112
ORF1ab/nsp641A41AgcCgcT33AY.3.10.000256
ORF1ab/nsp641A41AgcCgcT23AY.690.000373
ORF1ab/nsp641A41AgcCgcA13AY.690.000187
ORF1ab/nsp641A41AgcCgcT33B.1.1.3060.001315
ORF1ab/nsp641A41AgcCgcT33B.1.1.3260.005282
ORF1ab/nsp641A41AgcCgcT33B.1.1.330.001263
ORF1ab/nsp641A41AgcCgcT33B.1.1.5190.000119
ORF1ab/nsp641A41AgcCgcT33B.1.177.210.000229
ORF1ab/nsp641A41AgcCgcT33B.1.2340.000396
ORF1ab/nsp641A41AgcCgcT33B.1.2430.000209
ORF1ab/nsp641A41AgcCgcT33B.1.5250.000339
ORF1ab/nsp641A41AgcCgcT33B.1.5750.00091
ORF1ab/nsp641A41AgcCgcT33B.1.5950.000783
ORF1ab/nsp641A41AgcCgcT33B.60.00273
ORF1ab/nsp641A41AgcCgcA23P.1.150.000465
ORF1ab/nsp641A41AgcCgcT13P.1.150.000232
ORF1ab/nsp641A41AgcCgcT33P.1.170.000485
ORF1ab/nsp641A41AgcCgcT33Q.10.000379
ORF1ab/nsp641A41AgcCgcG220.111111
ORF1ab/nsp641A41AgcCgcT22AY.1110.000366
ORF1ab/nsp641A41AgcCgcT22AY.120.2.10.000997
ORF1ab/nsp641A41AgcCgcT22AY.230.000139
ORF1ab/nsp641A41AgcCgcA12AY.460.000104
ORF1ab/nsp641A41AgcCgcT12AY.460.000104
ORF1ab/nsp641A41AgcCgcT22AY.480.00093
ORF1ab/nsp641A41AgcCgcT22AY.540.000191
ORF1ab/nsp641A41AgcCgcT22AY.7.20.001119
ORF1ab/nsp641A41AgcCgcT22AY.840.000875
ORF1ab/nsp641A41AgcCgcT22AY.9.10.000167
ORF1ab/nsp641A41AgcCgcT22AZ.20.001642
ORF1ab/nsp641A41AgcCgcT22B.1.1.2220.000408
ORF1ab/nsp641A41AgcCgcA22B.1.1.2630.003115
ORF1ab/nsp641A41AgcCgcA22B.1.1.3050.007722
ORF1ab/nsp641A41AgcCgcT22B.1.1.3480.001592
ORF1ab/nsp641A41AgcCgcT22B.1.1.3770.002762
ORF1ab/nsp641A41AgcCgcT22B.1.1310.017544
ORF1ab/nsp641A41AgcCgcT22B.1.2320.001075
ORF1ab/nsp641A41AgcCgcT22B.1.360.000292
ORF1ab/nsp641A41AgcCgcT22B.1.36.290.001035
ORF1ab/nsp641A41AgcCgcT22B.1.780.017094
ORF1ab/nsp641A41AgcCgcT22C.370.000232
ORF1ab/nsp641A41AgcCgcA12N.50.001767
ORF1ab/nsp641A41AgcCgcT12N.50.001767
ORF1ab/nsp641A41AgcCgcT22P.1.120.000968
ORF1ab/nsp641A41AgcCgcT22P.1.70.000639
ORF1ab/nsp641A41AgcCgcT11A.10.000282
ORF1ab/nsp641A41AgcCgcT11A.23.10.000704
ORF1ab/nsp641A41AgcCgcT11AK.10.012658
ORF1ab/nsp641A41AgcCgcT11AY.10.000396
ORF1ab/nsp641A41AgcCgcT11AY.1060.000335
ORF1ab/nsp641A41AgcCgcT11AY.1100.000113
ORF1ab/nsp641A41AgcCgcT11AY.160.00038
ORF1ab/nsp641A41AgcCgcT11AY.16.10.00047
ORF1ab/nsp641A41AgcCgcT11AY.340.000097
ORF1ab/nsp641A41AgcCgcT11AY.34.10.00051
ORF1ab/nsp641A41AgcCgcT11AY.350.000233
ORF1ab/nsp641A41AgcCgcT11AY.360.000148
ORF1ab/nsp641A41AgcCgcA11AY.370.000316
ORF1ab/nsp641A41AgcCgcT11AY.4.2.10.000149
ORF1ab/nsp641A41AgcCgcT11AY.4.50.000107
ORF1ab/nsp641A41AgcCgcT11AY.400.000964
ORF1ab/nsp641A41AgcCgcA11AY.420.00004
ORF1ab/nsp641A41AgcCgcT11AY.450.000122
ORF1ab/nsp641A41AgcCgcT11AY.46.50.000198
ORF1ab/nsp641A41AgcCgcT11AY.5.20.002463
ORF1ab/nsp641A41AgcCgcT11AY.5.30.000337
ORF1ab/nsp641A41AgcCgcT11AY.580.000907
ORF1ab/nsp641A41AgcCgcT11AY.590.00053
ORF1ab/nsp641A41AgcCgcT11AY.600.000938
ORF1ab/nsp641A41AgcCgcT11AY.620.000436
ORF1ab/nsp641A41AgcCgcT11AY.670.000464
ORF1ab/nsp641A41AgcCgcT11AY.680.000274
ORF1ab/nsp641A41AgcCgcT11AY.700.000209
ORF1ab/nsp641A41AgcCgcT11AY.730.000665
ORF1ab/nsp641A41AgcCgcT11AY.850.000427
ORF1ab/nsp641A41AgcCgcA11AY.90.000068
ORF1ab/nsp641A41AgcCgcT11AY.9.2.10.001976
ORF1ab/nsp641A41AgcCgcT11AY.950.000761
ORF1ab/nsp641A41AgcCgcT11AY.960.002075
ORF1ab/nsp641A41AgcCgcT11AY.99.20.000092
ORF1ab/nsp641A41AgcCgcT11B0.000128
ORF1ab/nsp641A41AgcCgcT11B.1.1.1010.01
ORF1ab/nsp641A41AgcCgcT11B.1.1.120.007463
ORF1ab/nsp641A41AgcCgcT11B.1.1.1890.001513
ORF1ab/nsp641A41AgcCgcT11B.1.1.1980.001468
ORF1ab/nsp641A41AgcCgcT11B.1.1.2050.003717
ORF1ab/nsp641A41AgcCgcT11B.1.1.2140.000055
ORF1ab/nsp641A41AgcCgcT11B.1.1.260.005236
ORF1ab/nsp641A41AgcCgcT11B.1.1.2840.000107
ORF1ab/nsp641A41AgcCgcT11B.1.1.3190.017544
ORF1ab/nsp641A41AgcCgcT11B.1.1.370.000193
ORF1ab/nsp641A41AgcCgcT11B.1.1.4090.002833
ORF1ab/nsp641A41AgcCgcT11B.1.1.410.006329
ORF1ab/nsp641A41AgcCgcT11B.1.1.4660.008696
ORF1ab/nsp641A41AgcCgcT11B.1.1.5260.003546
ORF1ab/nsp641A41AgcCgcT11B.1.1.700.000341
ORF1ab/nsp641A41AgcCgcT11B.1.1.990.02381
ORF1ab/nsp641A41AgcCgcT11B.1.1400.018868
ORF1ab/nsp641A41AgcCgcT11B.1.1430.021277
ORF1ab/nsp641A41AgcCgcT11B.1.1570.002985
ORF1ab/nsp641A41AgcCgcT11B.1.177.160.000664
ORF1ab/nsp641A41AgcCgcT11B.1.177.40.000211
ORF1ab/nsp641A41AgcCgcT11B.1.177.460.000918
ORF1ab/nsp641A41AgcCgcT11B.1.177.570.000281
ORF1ab/nsp641A41AgcCgcT11B.1.177.580.001332
ORF1ab/nsp641A41AgcCgcT11B.1.177.70.000165
ORF1ab/nsp641A41AgcCgcT11B.1.177.730.000566
ORF1ab/nsp641A41AgcCgcT11B.1.177.770.000726
ORF1ab/nsp641A41AgcCgcA11B.1.177.810.000189
ORF1ab/nsp641A41AgcCgcT11B.1.177.860.000183
ORF1ab/nsp641A41AgcCgcT11B.1.1790.003759
ORF1ab/nsp641A41AgcCgcT11B.1.2060.000816
ORF1ab/nsp641A41AgcCgcT11B.1.230.006061
ORF1ab/nsp641A41AgcCgcA11B.1.258.110.000396
ORF1ab/nsp641A41AgcCgcT11B.1.258.140.00098
ORF1ab/nsp641A41AgcCgcT11B.1.2650.001271
ORF1ab/nsp641A41AgcCgcT11B.1.3150.006061
ORF1ab/nsp641A41AgcCgcT11B.1.3290.000608
ORF1ab/nsp641A41AgcCgcT11B.1.3300.028571
ORF1ab/nsp641A41AgcCgcT11B.1.3350.010309
ORF1ab/nsp641A41AgcCgcT11B.1.3490.000715
ORF1ab/nsp641A41AgcCgcT11B.1.36.10.00114
ORF1ab/nsp641A41AgcCgcT11B.1.36.360.000602
ORF1ab/nsp641A41AgcCgcT11B.1.3690.000285
ORF1ab/nsp641A41AgcCgcT11B.1.3750.00082
ORF1ab/nsp641A41AgcCgcT11B.1.3810.007812
ORF1ab/nsp641A41AgcCgcT11B.1.4000.000429
ORF1ab/nsp641A41AgcCgcT11B.1.4220.000812
ORF1ab/nsp641A41AgcCgcT11B.1.4250.002994
ORF1ab/nsp641A41AgcCgcT11B.1.4260.001009
ORF1ab/nsp641A41AgcCgcT11B.1.4800.002488
ORF1ab/nsp641A41AgcCgcT11B.1.5430.01
ORF1ab/nsp641A41AgcCgcT11B.1.5610.000397
ORF1ab/nsp641A41AgcCgcT11B.1.5650.00081
ORF1ab/nsp641A41AgcCgcT11B.1.5820.000491
ORF1ab/nsp641A41AgcCgcT11B.1.5980.016949
ORF1ab/nsp641A41AgcCgcA11B.1.6090.000479
ORF1ab/nsp641A41AgcCgcT11B.230.002924
ORF1ab/nsp641A41AgcCgcT11B.390.002331
ORF1ab/nsp641A41AgcCgcA11B.6.60.000889
ORF1ab/nsp641A41AgcCgcT11C.300.001727
ORF1ab/nsp641A41AgcCgcT11C.36.10.004149
ORF1ab/nsp641A41AgcCgcT11P.20.000187
ORF1ab/nsp641A41AgcCgcT11P.50.013699
ORF1ab/nsp641A41AgcCgcT11Q.40.000455
ORF1ab/nsp641A41AgcCgcT11Q.70.001111