CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = A2V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp62A2VA3571VnonsyngCagTa37696376850.99970810976-10978
ORF1ab/nsp62A2VA3571VnonsyngCAgTG3769680.00021222410976-10978
ORF1ab/nsp62A2VA3571VnonsyngCAgTC3769620.00005305610976-10978
ORF1ab/nsp62A2VA3571VnonsyngCAgTT3769610.00002652810976-10978

Details of the mutation A2V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp62A2VgCagTa3768537696All0.007208
ORF1ab/nsp62A2VgCAgTG837696All0.000002
ORF1ab/nsp62A2VgCAgTC237696All0
ORF1ab/nsp62A2VgCAgTT137696All0
ORF1ab/nsp62A2VgCagTa1305213052AY.46.60.942451
ORF1ab/nsp62A2VgCagTa67696770AY.460.704517
ORF1ab/nsp62A2VgCAgTG16770AY.460.000104
ORF1ab/nsp62A2VgCagTa50405040AY.46.51
ORF1ab/nsp62A2VgCagTa41104110AY.46.40.676098
ORF1ab/nsp62A2VgCagTa30393039B.1.617.20.011443
ORF1ab/nsp62A2VgCagTa10651065AY.46.30.994398
ORF1ab/nsp62A2VgCagTa969969AY.46.20.615629
ORF1ab/nsp62A2VgCagTa835835B.1.1.2070.986998
ORF1ab/nsp62A2VgCagTa684684AY.46.10.702259
ORF1ab/nsp62A2VgCagTa482482B.1.177.110.818336
ORF1ab/nsp62A2VgCagTa375375AY.960.778008
ORF1ab/nsp62A2VgCagTa148148B.1.1.70.000132
ORF1ab/nsp62A2VgCagTa128128B.1.20.001127
ORF1ab/nsp62A2VgCagTa110110AY.40.000171
ORF1ab/nsp62A2VgCagTa9191AY.1030.000565
ORF1ab/nsp62A2VgCagTa8687AY.390.002125
ORF1ab/nsp62A2VgCAgTT187AY.390.000025
ORF1ab/nsp62A2VgCagTa6363AY.1170.005325
ORF1ab/nsp62A2VgCagTa4747AY.430.000208
ORF1ab/nsp62A2VgCagTa4545AY.420.00181
ORF1ab/nsp62A2VgCagTa4444B.1.1.4110.647059
ORF1ab/nsp62A2VgCagTa4242B.10.000385
ORF1ab/nsp62A2VgCagTa3939B.1.1.1890.059002
ORF1ab/nsp62A2VgCagTa3838AY.250.000229
ORF1ab/nsp62A2VgCagTa2929AY.4.20.000629
ORF1ab/nsp62A2VgCagTa1721P.10.000268
ORF1ab/nsp62A2VgCAgTG421P.10.000063
ORF1ab/nsp62A2VgCagTa1919AY.440.000116
ORF1ab/nsp62A2VgCagTa1818AY.200.0007
ORF1ab/nsp62A2VgCagTa1818AY.450.00219
ORF1ab/nsp62A2VgCagTa1818B.1.10.000327
ORF1ab/nsp62A2VgCagTa1616AY.920.004596
ORF1ab/nsp62A2VgCagTa1414AY.650.007463
ORF1ab/nsp62A2VgCagTa1212B.1.3510.000357
ORF1ab/nsp62A2VgCagTa1010AY.690.001867
ORF1ab/nsp62A2VgCagTa99B.1.5310.75
ORF1ab/nsp62A2VgCagTa99P.1.140.00043
ORF1ab/nsp62A2VgCagTa99P.1.20.010405
ORF1ab/nsp62A2VgCagTa77AY.260.000198
ORF1ab/nsp62A2VgCagTa66AY.1010.002943
ORF1ab/nsp62A2VgCagTa55AY.4.50.000537
ORF1ab/nsp62A2VgCagTa55B.1.1.5190.000199
ORF1ab/nsp62A2VgCagTa55B.1.1600.000156
ORF1ab/nsp62A2VgCagTa55B.1.1770.000066
ORF1ab/nsp62A2VgCagTa55B.1.4270.000252
ORF1ab/nsp62A2VgCagTa55C.370.00058
ORF1ab/nsp62A2VgCagTa240.111111
ORF1ab/nsp62A2VgCAgTC240.111111
ORF1ab/nsp62A2VgCagTa44AY.320.00213
ORF1ab/nsp62A2VgCagTa44AY.330.000267
ORF1ab/nsp62A2VgCagTa44AY.98.10.000194
ORF1ab/nsp62A2VgCagTa44B.1.1.2530.010025
ORF1ab/nsp62A2VgCagTa24P.1.120.000968
ORF1ab/nsp62A2VgCAgTG24P.1.120.000968
ORF1ab/nsp62A2VgCagTa33AY.1020.00008
ORF1ab/nsp62A2VgCagTa33AY.1130.000427
ORF1ab/nsp62A2VgCagTa33AY.1190.000106
ORF1ab/nsp62A2VgCagTa33AY.230.000209
ORF1ab/nsp62A2VgCagTa33AY.580.002722
ORF1ab/nsp62A2VgCagTa33AY.9.20.00011
ORF1ab/nsp62A2VgCagTa33AY.950.002283
ORF1ab/nsp62A2VgCagTa33B.1.2340.000396
ORF1ab/nsp62A2VgCagTa33B.1.2400.000647
ORF1ab/nsp62A2VgCagTa33B.1.2430.000209
ORF1ab/nsp62A2VgCagTa33B.1.4060.018182
ORF1ab/nsp62A2VgCagTa33B.1.4290.000071
ORF1ab/nsp62A2VgCagTa33B.1.5960.000261
ORF1ab/nsp62A2VgCagTa23P.20.000373
ORF1ab/nsp62A2VgCAgTG13P.20.000187
ORF1ab/nsp62A2VgCagTa22AY.1160.000574
ORF1ab/nsp62A2VgCagTa22AY.1200.000074
ORF1ab/nsp62A2VgCagTa22AY.340.000194
ORF1ab/nsp62A2VgCagTa22AY.39.10.000079
ORF1ab/nsp62A2VgCagTa22AY.750.000112
ORF1ab/nsp62A2VgCagTa22AY.980.000158
ORF1ab/nsp62A2VgCagTa22B0.000256
ORF1ab/nsp62A2VgCagTa22B.1.1.1860.006873
ORF1ab/nsp62A2VgCagTa22B.1.1.2220.000408
ORF1ab/nsp62A2VgCagTa22B.1.1.5180.012658
ORF1ab/nsp62A2VgCagTa22B.1.1.530.027397
ORF1ab/nsp62A2VgCagTa22B.1.258.170.000208
ORF1ab/nsp62A2VgCagTa22B.1.2680.020833
ORF1ab/nsp62A2VgCagTa22B.1.360.000292
ORF1ab/nsp62A2VgCagTa22B.1.4700.002809
ORF1ab/nsp62A2VgCagTa22B.1.6090.000959
ORF1ab/nsp62A2VgCagTa22B.1.617.10.000258
ORF1ab/nsp62A2VgCagTa22Q.80.00033
ORF1ab/nsp62A2VgCagTa11A0.000387
ORF1ab/nsp62A2VgCagTa11A.10.000282
ORF1ab/nsp62A2VgCagTa11AY.1060.000335
ORF1ab/nsp62A2VgCagTa11AY.1180.000063
ORF1ab/nsp62A2VgCagTa11AY.160.00038
ORF1ab/nsp62A2VgCagTa11AY.220.002092
ORF1ab/nsp62A2VgCagTa11AY.470.000031
ORF1ab/nsp62A2VgCagTa11AY.50.000021
ORF1ab/nsp62A2VgCagTa11AY.530.000288
ORF1ab/nsp62A2VgCagTa11AY.620.000436
ORF1ab/nsp62A2VgCagTa11AY.780.001541
ORF1ab/nsp62A2VgCagTa11B.1.1.1410.002012
ORF1ab/nsp62A2VgCagTa11B.1.1.1610.003534
ORF1ab/nsp62A2VgCagTa11B.1.1.2160.00089
ORF1ab/nsp62A2VgCagTa11B.1.1.2940.001266
ORF1ab/nsp62A2VgCagTa11B.1.1.3060.000438
ORF1ab/nsp62A2VgCagTa11B.1.1.3110.000358
ORF1ab/nsp62A2VgCagTa11B.1.1.3260.001761
ORF1ab/nsp62A2VgCagTa11B.1.1.4090.002833
ORF1ab/nsp62A2VgCagTa11B.1.1.4160.000905
ORF1ab/nsp62A2VgCagTa11B.1.1.4340.000349
ORF1ab/nsp62A2VgCagTa11B.1.160.290.004219
ORF1ab/nsp62A2VgCagTa11B.1.1640.014925
ORF1ab/nsp62A2VgCagTa11B.1.177.190.001431
ORF1ab/nsp62A2VgCagTa11B.1.177.350.000691
ORF1ab/nsp62A2VgCagTa11B.1.177.560.000668
ORF1ab/nsp62A2VgCagTa11B.1.2140.003663
ORF1ab/nsp62A2VgCagTa11B.1.214.20.0006
ORF1ab/nsp62A2VgCagTa11B.1.2360.002053
ORF1ab/nsp62A2VgCagTa11B.1.2580.000067
ORF1ab/nsp62A2VgCagTa11B.1.2600.003344
ORF1ab/nsp62A2VgCagTa11B.1.2790.000514
ORF1ab/nsp62A2VgCagTa11B.1.36.270.000763
ORF1ab/nsp62A2VgCagTa11B.1.3670.000792
ORF1ab/nsp62A2VgCagTa11B.1.4970.000315
ORF1ab/nsp62A2VgCagTa11B.1.5330.009615
ORF1ab/nsp62A2VgCagTa11B.1.5760.000907
ORF1ab/nsp62A2VgCagTa11B.1.5770.000687
ORF1ab/nsp62A2VgCagTa11B.1.5950.000261
ORF1ab/nsp62A2VgCagTa11B.1.6210.000089
ORF1ab/nsp62A2VgCagTa11B.1.6230.000536
ORF1ab/nsp62A2VgCagTa11B.1.6360.006711
ORF1ab/nsp62A2VgCagTa11B.1.930.000934
ORF1ab/nsp62A2VgCagTa11C.160.00106
ORF1ab/nsp62A2VgCagTa11D.20.000075
ORF1ab/nsp62A2VgCagTa11N.30.005814

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.