CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 2 | A2V | A3571V | nonsyn | gCa | gTa | 37696 | 37685 | 0.999708 | 10976-10978 |
ORF1ab/nsp6 | 2 | A2V | A3571V | nonsyn | gCA | gTG | 37696 | 8 | 0.000212224 | 10976-10978 |
ORF1ab/nsp6 | 2 | A2V | A3571V | nonsyn | gCA | gTC | 37696 | 2 | 0.000053056 | 10976-10978 |
ORF1ab/nsp6 | 2 | A2V | A3571V | nonsyn | gCA | gTT | 37696 | 1 | 0.000026528 | 10976-10978 |
Details of the mutation A2V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 37685 | 37696 | All | 0.007208 |
ORF1ab/nsp6 | 2 | A2V | gCA | gTG | 8 | 37696 | All | 0.000002 |
ORF1ab/nsp6 | 2 | A2V | gCA | gTC | 2 | 37696 | All | 0 |
ORF1ab/nsp6 | 2 | A2V | gCA | gTT | 1 | 37696 | All | 0 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 13052 | 13052 | AY.46.6 | 0.942451 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 6769 | 6770 | AY.46 | 0.704517 |
ORF1ab/nsp6 | 2 | A2V | gCA | gTG | 1 | 6770 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 5040 | 5040 | AY.46.5 | 1 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 4110 | 4110 | AY.46.4 | 0.676098 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3039 | 3039 | B.1.617.2 | 0.011443 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1065 | 1065 | AY.46.3 | 0.994398 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 969 | 969 | AY.46.2 | 0.615629 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 835 | 835 | B.1.1.207 | 0.986998 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 684 | 684 | AY.46.1 | 0.702259 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 482 | 482 | B.1.177.11 | 0.818336 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 375 | 375 | AY.96 | 0.778008 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 148 | 148 | B.1.1.7 | 0.000132 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 128 | 128 | B.1.2 | 0.001127 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 110 | 110 | AY.4 | 0.000171 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 91 | 91 | AY.103 | 0.000565 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 86 | 87 | AY.39 | 0.002125 |
ORF1ab/nsp6 | 2 | A2V | gCA | gTT | 1 | 87 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 63 | 63 | AY.117 | 0.005325 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 47 | 47 | AY.43 | 0.000208 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 45 | 45 | AY.42 | 0.00181 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 44 | 44 | B.1.1.411 | 0.647059 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 42 | 42 | B.1 | 0.000385 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 39 | 39 | B.1.1.189 | 0.059002 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 38 | 38 | AY.25 | 0.000229 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 29 | 29 | AY.4.2 | 0.000629 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 17 | 21 | P.1 | 0.000268 |
ORF1ab/nsp6 | 2 | A2V | gCA | gTG | 4 | 21 | P.1 | 0.000063 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 19 | 19 | AY.44 | 0.000116 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 18 | 18 | AY.20 | 0.0007 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 18 | 18 | AY.45 | 0.00219 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 18 | 18 | B.1.1 | 0.000327 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 16 | 16 | AY.92 | 0.004596 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 14 | 14 | AY.65 | 0.007463 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 10 | 10 | AY.69 | 0.001867 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 9 | 9 | B.1.531 | 0.75 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 9 | 9 | P.1.2 | 0.010405 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 6 | 6 | AY.101 | 0.002943 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 2 | A2V | gCA | gTC | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 4 | 4 | B.1.1.253 | 0.010025 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 4 | P.1.12 | 0.000968 |
ORF1ab/nsp6 | 2 | A2V | gCA | gTG | 2 | 4 | P.1.12 | 0.000968 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3 | 3 | B.1.406 | 0.018182 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 3 | P.2 | 0.000373 |
ORF1ab/nsp6 | 2 | A2V | gCA | gTG | 1 | 3 | P.2 | 0.000187 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | B | 0.000256 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | B.1.1.186 | 0.006873 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | B.1.1.518 | 0.012658 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | B.1.1.53 | 0.027397 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | B.1.268 | 0.020833 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 2 | A2V | gCa | gTa | 1 | 1 | N.3 | 0.005814 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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