CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : Mut = A2A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp62A2AA3571AsyngcAgcT200614680.73180510976-10978
ORF1ab/nsp62A2AA3571AsyngcAgcG20065050.25174510976-10978
ORF1ab/nsp62A2AA3571AsyngcAgcC2006330.016450610976-10978

Details of the mutation A2A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp62A2AgcAgcT14682006All0.000281
ORF1ab/nsp62A2AgcAgcG5052006All0.000097
ORF1ab/nsp62A2AgcAgcC332006All0.000006
ORF1ab/nsp62A2AgcAgcT566566B.1.258.30.948074
ORF1ab/nsp62A2AgcAgcT525526B.1.2580.034937
ORF1ab/nsp62A2AgcAgcG1526B.1.2580.000067
ORF1ab/nsp62A2AgcAgcG293306AY.550.268807
ORF1ab/nsp62A2AgcAgcT11306AY.550.010092
ORF1ab/nsp62A2AgcAgcC2306AY.550.001835
ORF1ab/nsp62A2AgcAgcT212212B.1.258.20.954955
ORF1ab/nsp62A2AgcAgcG108121AY.40.000168
ORF1ab/nsp62A2AgcAgcT12121AY.40.000019
ORF1ab/nsp62A2AgcAgcC1121AY.40.000002
ORF1ab/nsp62A2AgcAgcT6161B.1.258.240.655914
ORF1ab/nsp62A2AgcAgcT1529B.1.1.70.000013
ORF1ab/nsp62A2AgcAgcG1129B.1.1.70.00001
ORF1ab/nsp62A2AgcAgcC329B.1.1.70.000003
ORF1ab/nsp62A2AgcAgcT2424G.11
ORF1ab/nsp62A2AgcAgcG2323AY.200.000894
ORF1ab/nsp62A2AgcAgcC1421P.10.000221
ORF1ab/nsp62A2AgcAgcG721P.10.00011
ORF1ab/nsp62A2AgcAgcG1011B.1.617.20.000038
ORF1ab/nsp62A2AgcAgcT111B.1.617.20.000004
ORF1ab/nsp62A2AgcAgcT810B.10.000073
ORF1ab/nsp62A2AgcAgcG210B.10.000018
ORF1ab/nsp62A2AgcAgcG88AY.750.000448
ORF1ab/nsp62A2AgcAgcC88B.1.438.10.000858
ORF1ab/nsp62A2AgcAgcT35AY.1030.000019
ORF1ab/nsp62A2AgcAgcG25AY.1030.000012
ORF1ab/nsp62A2AgcAgcG44AY.30.00004
ORF1ab/nsp62A2AgcAgcT44B.1.258.170.000416
ORF1ab/nsp62A2AgcAgcT44B.1.575.10.009756
ORF1ab/nsp62A2AgcAgcG23AY.430.000009
ORF1ab/nsp62A2AgcAgcC13AY.430.000004
ORF1ab/nsp62A2AgcAgcG33AY.490.009585
ORF1ab/nsp62A2AgcAgcG33AY.670.001393
ORF1ab/nsp62A2AgcAgcT33B.1.1.2800.009259
ORF1ab/nsp62A2AgcAgcT23B.1.3510.000059
ORF1ab/nsp62A2AgcAgcG13B.1.3510.00003
ORF1ab/nsp62A2AgcAgcC220.111111
ORF1ab/nsp62A2AgcAgcG12AY.250.000006
ORF1ab/nsp62A2AgcAgcT12AY.250.000006
ORF1ab/nsp62A2AgcAgcT22AY.390.000049
ORF1ab/nsp62A2AgcAgcT22AY.46.10.002053
ORF1ab/nsp62A2AgcAgcG22AY.9.20.000073
ORF1ab/nsp62A2AgcAgcT22B.1.10.000036
ORF1ab/nsp62A2AgcAgcG22B.1.1.4200.002012
ORF1ab/nsp62A2AgcAgcT22B.1.1.5260.007092
ORF1ab/nsp62A2AgcAgcG12B.1.20.000009
ORF1ab/nsp62A2AgcAgcT12B.1.20.000009
ORF1ab/nsp62A2AgcAgcG22B.1.2210.000142
ORF1ab/nsp62A2AgcAgcG22B.1.4290.000047
ORF1ab/nsp62A2AgcAgcG22P.1.120.000968
ORF1ab/nsp62A2AgcAgcG11AY.1000.000046
ORF1ab/nsp62A2AgcAgcG11AY.130.000161
ORF1ab/nsp62A2AgcAgcG11AY.440.000006
ORF1ab/nsp62A2AgcAgcG11AY.590.00053
ORF1ab/nsp62A2AgcAgcG11AY.680.000274
ORF1ab/nsp62A2AgcAgcG11AY.850.000427
ORF1ab/nsp62A2AgcAgcG11AY.920.000287
ORF1ab/nsp62A2AgcAgcG11AY.99.20.000092
ORF1ab/nsp62A2AgcAgcT11B.1.1.2220.000204
ORF1ab/nsp62A2AgcAgcG11B.1.1.5190.00004
ORF1ab/nsp62A2AgcAgcC11B.1.1600.000031
ORF1ab/nsp62A2AgcAgcG11B.1.177.160.000664
ORF1ab/nsp62A2AgcAgcT11B.1.177.60.000977
ORF1ab/nsp62A2AgcAgcG11B.1.177.650.000665
ORF1ab/nsp62A2AgcAgcC11B.1.2230.002778
ORF1ab/nsp62A2AgcAgcT11B.1.36.290.000517
ORF1ab/nsp62A2AgcAgcT11B.1.3800.006623
ORF1ab/nsp62A2AgcAgcT11B.3.10.001658
ORF1ab/nsp62A2AgcAgcG11B.60.00091
ORF1ab/nsp62A2AgcAgcT11P.1.70.000319
ORF1ab/nsp62A2AgcAgcG11P.20.000187
ORF1ab/nsp62A2AgcAgcT11P.30.001595
ORF1ab/nsp62A2AgcAgcG11Q.30.000145
ORF1ab/nsp62A2AgcAgcG11W.30.005263