CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 98 | L98F | L3667F | nonsyn | ttG | ttT | 3140 | 3064 | 0.975796 | 11264-11266 |
ORF1ab/nsp6 | 98 | L98F | L3667F | nonsyn | ttG | ttC | 3140 | 76 | 0.0242038 | 11264-11266 |
ORF1ab/nsp6 | 98 | L98L | L3667L | syn | ttG | ttA | 677 | 540 | 0.797637 | 11264-11266 |
ORF1ab/nsp6 | 98 | L98L | L3667L | syn | Ttg | Ctg | 677 | 137 | 0.202363 | 11264-11266 |
ORF1ab/nsp6 | 98 | L98del | L3667del | del | TTG | --- | 17 | 17 | 1 | 11264-11266 |
ORF1ab/nsp6 | 98 | L98S | L3667S | nonsyn | tTg | tCg | 9 | 9 | 1 | 11264-11266 |
ORF1ab/nsp6 | 98 | L98del1 | L3667del1 | del | ttG | tt- | 6 | 5 | 0.833333 | 11264-11266 |
ORF1ab/nsp6 | 98 | L98del1 | L3667del1 | del | Ttg | -tg | 6 | 1 | 0.166667 | 11264-11266 |
ORF1ab/nsp6 | 98 | L98M | L3667M | nonsyn | Ttg | Atg | 5 | 5 | 1 | 11264-11266 |
ORF1ab/nsp6 | 98 | L98I | L3667I | nonsyn | TtG | AtT | 3 | 2 | 0.666667 | 11264-11266 |
ORF1ab/nsp6 | 98 | L98I | L3667I | nonsyn | TtG | AtA | 3 | 1 | 0.333333 | 11264-11266 |
ORF1ab/nsp6 | 98 | L98X | L3667X | nonsyn | tTg | tAg | 1 | 1 | 1 | 11264-11266 |
ORF1ab/nsp6 | 98 | L98W | L3667W | nonsyn | tTg | tGg | 1 | 1 | 1 | 11264-11266 |
ORF1ab/nsp6 | 98 | L98P | L3667P | nonsyn | TTG | CCA | 1 | 1 | 1 | 11264-11266 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3064 | 3140 | All | 0.000586 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttC | 76 | 3140 | All | 0.000015 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1417 | 1417 | A.23.1 | 0.997887 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 540 | 677 | All | 0.000103 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 137 | 677 | All | 0.000026 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 244 | 245 | B.1.1.7 | 0.000218 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttC | 1 | 245 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 186 | 188 | B.1.617.2 | 0.0007 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttC | 2 | 188 | B.1.617.2 | 0.000008 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 114 | 168 | B.1.1.7 | 0.000102 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 54 | 168 | B.1.1.7 | 0.000048 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 167 | 167 | AY.74 | 0.019313 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 131 | 132 | AY.4 | 0.000204 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttC | 1 | 132 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 127 | 127 | B.1.421 | 0.947761 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 94 | 94 | A.23 | 0.989474 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttC | 59 | 86 | AY.25 | 0.000355 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 27 | 86 | AY.25 | 0.000162 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 85 | 85 | B.1.351 | 0.002527 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 63 | 66 | AY.44 | 0.000383 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttC | 3 | 66 | AY.44 | 0.000018 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 46 | 51 | AY.39 | 0.001137 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttC | 5 | 51 | AY.39 | 0.000124 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 30 | 44 | B.1.2 | 0.000264 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 14 | 44 | B.1.2 | 0.000123 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 39 | 39 | AY.102 | 0.001034 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 39 | 39 | B.1 | 0.000357 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 19 | 36 | AY.4 | 0.00003 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 17 | 36 | AY.4 | 0.000026 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 31 | 32 | AY.43 | 0.000137 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttC | 1 | 32 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 31 | 31 | B.1.36 | 0.004523 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 30 | 30 | AY.75 | 0.001681 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 24 | 25 | AY.47 | 0.000747 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttC | 1 | 25 | AY.47 | 0.000031 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 25 | 25 | P.1 | 0.000394 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 22 | 22 | AY.103 | 0.000137 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 21 | 22 | B.1 | 0.000192 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 1 | 22 | B.1 | 0.000009 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 22 | 22 | B.1.427 | 0.001111 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 18 | 18 | AY.3 | 0.000179 |
ORF1ab/nsp6 | 98 | L98del | TTG | --- | 17 | 17 | All | 0.000003 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 17 | 17 | B.1.1.39 | 0.008665 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 15 | 15 | B.1.1.317 | 0.006175 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 15 | 15 | B.1.351 | 0.000446 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 13 | 13 | A | 0.005031 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 13 | 13 | AY.9 | 0.000879 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 10 | 13 | B.1.617.2 | 0.000038 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 3 | 13 | B.1.617.2 | 0.000011 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 13 | 13 | P.1.7 | 0.004151 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 12 | 12 | AY.120 | 0.000446 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 12 | 12 | B.1.1 | 0.000218 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 12 | 12 | B.1.1.432 | 0.01519 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 11 | 11 | AY.111 | 0.002015 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 11 | 11 | B.1.441 | 0.105769 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 10 | 10 | B.1.177.81 | 0.001893 |
ORF1ab/nsp6 | 98 | L98S | tTg | tCg | 9 | 9 | All | 0.000002 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 9 | 9 | AY.4.2 | 0.000195 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 7 | 7 | B.1.177.81 | 0.001325 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp6 | 98 | L98del1 | ttG | tt- | 5 | 6 | All | 0.000001 |
ORF1ab/nsp6 | 98 | L98del1 | Ttg | -tg | 1 | 6 | All | 0 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 6 | 6 | B.1.306 | 0.034286 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp6 | 98 | L98M | Ttg | Atg | 5 | 5 | All | 0.000001 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 3 | 5 | AY.44 | 0.000018 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 2 | 5 | AY.44 | 0.000012 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 5 | 5 | AY.57 | 0.003281 |
ORF1ab/nsp6 | 98 | L98del | TTG | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 5 | 5 | B.1.160.26 | 0.012107 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 5 | 5 | B.1.280 | 0.035714 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 4 | 4 | AE.8 | 0.001956 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3 | 4 | AY.45 | 0.000365 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttC | 1 | 4 | AY.45 | 0.000122 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp6 | 98 | L98del1 | ttG | tt- | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp6 | 98 | L98del1 | Ttg | -tg | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 4 | 4 | B.1.1.326 | 0.007042 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 4 | 4 | B.1.232 | 0.002149 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 4 | 4 | B.1.589 | 0.030303 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 3 | AD.2 | 0.000438 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttC | 1 | 3 | AD.2 | 0.000219 |
ORF1ab/nsp6 | 98 | L98I | TtG | AtT | 2 | 3 | All | 0 |
ORF1ab/nsp6 | 98 | L98I | TtG | AtA | 1 | 3 | All | 0 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3 | 3 | AY.40 | 0.002893 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3 | 3 | AY.51 | 0.002727 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 3 | 3 | B.1.469 | 0.01083 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 2 | 3 | P.1 | 0.000032 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp6 | 98 | L98I | TtG | AtT | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 98 | L98M | Ttg | Atg | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp6 | 98 | L98del | TTG | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp6 | 98 | L98del | TTG | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp6 | 98 | L98M | Ttg | Atg | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp6 | 98 | L98S | tTg | tCg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | B.1.1.362 | 0.011236 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 2 | 2 | B.1.1.402 | 0.022222 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | B.1.626 | 0.011429 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 2 | 2 | L.3 | 0.007092 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp6 | 98 | L98X | tTg | tAg | 1 | 1 | AA.1 | 0.007246 |
ORF1ab/nsp6 | 98 | L98W | tTg | tGg | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 98 | L98X | tTg | tAg | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 98 | L98P | TTG | CCA | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp6 | 98 | L98S | tTg | tCg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 98 | L98S | tTg | tCg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp6 | 98 | L98M | Ttg | Atg | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp6 | 98 | L98I | TtG | AtA | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp6 | 98 | L98W | tTg | tGg | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp6 | 98 | L98del | TTG | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp6 | 98 | L98S | tTg | tCg | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 98 | L98del1 | ttG | tt- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 98 | L98del | TTG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.1.187 | 0.00885 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp6 | 98 | L98P | TTG | CCA | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp6 | 98 | L98del | TTG | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp6 | 98 | L98S | tTg | tCg | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp6 | 98 | L98del | TTG | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp6 | 98 | L98S | tTg | tCg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.120 | 0.007692 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp6 | 98 | L98S | tTg | tCg | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp6 | 98 | L98S | tTg | tCg | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp6 | 98 | L98del | TTG | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp6 | 98 | L98del1 | ttG | tt- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 98 | L98del | TTG | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp6 | 98 | L98del | TTG | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 98 | L98L | Ttg | Ctg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 98 | L98del | TTG | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 98 | L98L | ttG | ttA | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp6 | 98 | L98F | ttG | ttC | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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