CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 91 & Codon = gtT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp691V91VV3660VsyngtGgtT8082710.33539611243-11245

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp691V91VgtGgtT271808All0.000052
ORF1ab/nsp691V91VgtGgtT14345B.1.1.70.000013
ORF1ab/nsp691V91VgtGgtT5155B.1.20.000449
ORF1ab/nsp691V91VgtGgtT5050B.1.2580.003327
ORF1ab/nsp691V91VgtGgtT1528AY.40.000023
ORF1ab/nsp691V91VgtGgtT2728B.10.000247
ORF1ab/nsp691V91VgtGgtT2525AY.230.001744
ORF1ab/nsp691V91VgtGgtT18AY.250.000006
ORF1ab/nsp691V91VgtGgtT88B.1.1.2070.009456
ORF1ab/nsp691V91VgtGgtT67AY.430.000027
ORF1ab/nsp691V91VgtGgtT47B.1.617.20.000015
ORF1ab/nsp691V91VgtGgtT66AY.1020.000159
ORF1ab/nsp691V91VgtGgtT55AY.440.00003
ORF1ab/nsp691V91VgtGgtT55B.1.10.000091
ORF1ab/nsp691V91VgtGgtT35B.1.1.5190.000119
ORF1ab/nsp691V91VgtGgtT24P.10.000032
ORF1ab/nsp691V91VgtGgtT33B.1.1600.000094
ORF1ab/nsp691V91VgtGgtT33B.1.3510.000089
ORF1ab/nsp691V91VgtGgtT12AY.1030.000006
ORF1ab/nsp691V91VgtGgtT12AY.330.000067
ORF1ab/nsp691V91VgtGgtT22AY.460.000208
ORF1ab/nsp691V91VgtGgtT22AY.50.000041
ORF1ab/nsp691V91VgtGgtT22B0.000256
ORF1ab/nsp691V91VgtGgtT22B.1.351.30.001753
ORF1ab/nsp691V91VgtGgtT22B.1.4560.006536
ORF1ab/nsp691V91VgtGgtT22B.1.617.10.000258
ORF1ab/nsp691V91VgtGgtT11AY.1110.000183
ORF1ab/nsp691V91VgtGgtT11AY.1180.000063
ORF1ab/nsp691V91VgtGgtT11AY.140.000088
ORF1ab/nsp691V91VgtGgtT11AY.160.00038
ORF1ab/nsp691V91VgtGgtT11AY.16.10.00047
ORF1ab/nsp691V91VgtGgtT11AY.180.010101
ORF1ab/nsp691V91VgtGgtT11AY.30.00001
ORF1ab/nsp691V91VgtGgtT11AY.360.000148
ORF1ab/nsp691V91VgtGgtT11AY.390.000025
ORF1ab/nsp691V91VgtGgtT11AY.4.20.000022
ORF1ab/nsp691V91VgtGgtT11AY.4.2.10.000149
ORF1ab/nsp691V91VgtGgtT11AY.450.000122
ORF1ab/nsp691V91VgtGgtT11AY.46.20.000635
ORF1ab/nsp691V91VgtGgtT11AY.520.000814
ORF1ab/nsp691V91VgtGgtT11AY.590.00053
ORF1ab/nsp691V91VgtGgtT11AY.680.000274
ORF1ab/nsp691V91VgtGgtT11AY.9.20.000037
ORF1ab/nsp691V91VgtGgtT11AY.930.000273
ORF1ab/nsp691V91VgtGgtT11B.1.1.1530.001095
ORF1ab/nsp691V91VgtGgtT11B.1.1.1690.018182
ORF1ab/nsp691V91VgtGgtT11B.1.1.2140.000055
ORF1ab/nsp691V91VgtGgtT11B.1.1.330.000421
ORF1ab/nsp691V91VgtGgtT11B.1.2360.002053
ORF1ab/nsp691V91VgtGgtT11B.1.36.180.00042
ORF1ab/nsp691V91VgtGgtT11B.1.5170.000427
ORF1ab/nsp691V91VgtGgtT11B.340.013699
ORF1ab/nsp691V91VgtGgtT11D.20.000075
ORF1ab/nsp691V91VgtGgtT11P.1.150.000232
ORF1ab/nsp691V91VgtGgtT11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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