CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 91 & Codon = gtA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp691V91VV3660VsyngtGgtA8085280.65346511243-11245

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp691V91VgtGgtA528808All0.000101
ORF1ab/nsp691V91VgtGgtA329345B.1.1.70.000295
ORF1ab/nsp691V91VgtGgtA136136B.1.2650.172808
ORF1ab/nsp691V91VgtGgtA455B.1.20.000035
ORF1ab/nsp691V91VgtGgtA1328AY.40.00002
ORF1ab/nsp691V91VgtGgtA128B.10.000009
ORF1ab/nsp691V91VgtGgtA78AY.250.000042
ORF1ab/nsp691V91VgtGgtA17AY.430.000004
ORF1ab/nsp691V91VgtGgtA37B.1.617.20.000011
ORF1ab/nsp691V91VgtGgtA66B.1.2930.075
ORF1ab/nsp691V91VgtGgtA25B.1.1.5190.000079
ORF1ab/nsp691V91VgtGgtA24P.10.000032
ORF1ab/nsp691V91VgtGgtA33AY.1000.000138
ORF1ab/nsp691V91VgtGgtA33B.1.1.2220.000612
ORF1ab/nsp691V91VgtGgtA220.111111
ORF1ab/nsp691V91VgtGgtA12AY.330.000067
ORF1ab/nsp691V91VgtGgtA22AY.670.000929
ORF1ab/nsp691V91VgtGgtA22B.1.5260.000047
ORF1ab/nsp691V91VgtGgtA11AY.20.000356
ORF1ab/nsp691V91VgtGgtA11AY.23.10.000417
ORF1ab/nsp691V91VgtGgtA11AY.260.000028
ORF1ab/nsp691V91VgtGgtA11AY.290.000016
ORF1ab/nsp691V91VgtGgtA11AY.570.000656
ORF1ab/nsp691V91VgtGgtA11B.1.4270.00005
ORF1ab/nsp691V91VgtGgtA11B.1.466.20.000391
ORF1ab/nsp691V91VgtGgtA11B.1.6090.000479
ORF1ab/nsp691V91VgtGgtA11C.230.005814
ORF1ab/nsp691V91VgtGgtA11C.350.000774
ORF1ab/nsp691V91VgtGgtA11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.