CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 91 & Codon = Atg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp691V91MV3660MnonsynGtgAtg251251111243-11245

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp691V91MGtgAtg251251All0.000048
ORF1ab/nsp691V91MGtgAtg3939B.1.5750.011833
ORF1ab/nsp691V91MGtgAtg2525B.1.1.1521
ORF1ab/nsp691V91MGtgAtg2222B.1.20.000194
ORF1ab/nsp691V91MGtgAtg1919B.1.2430.001322
ORF1ab/nsp691V91MGtgAtg1818B.1.1.70.000016
ORF1ab/nsp691V91MGtgAtg1717AY.460.001769
ORF1ab/nsp691V91MGtgAtg1111P.20.002053
ORF1ab/nsp691V91MGtgAtg99AY.440.000055
ORF1ab/nsp691V91MGtgAtg99AY.46.10.00924
ORF1ab/nsp691V91MGtgAtg88B.1.617.20.00003
ORF1ab/nsp691V91MGtgAtg66AY.250.000036
ORF1ab/nsp691V91MGtgAtg66B.1.1770.000079
ORF1ab/nsp691V91MGtgAtg55AY.430.000022
ORF1ab/nsp691V91MGtgAtg44AY.40.000006
ORF1ab/nsp691V91MGtgAtg44AY.46.20.002541
ORF1ab/nsp691V91MGtgAtg44AY.98.10.000194
ORF1ab/nsp691V91MGtgAtg44B.10.000037
ORF1ab/nsp691V91MGtgAtg33AY.1030.000019
ORF1ab/nsp691V91MGtgAtg33AY.340.000291
ORF1ab/nsp691V91MGtgAtg33AY.620.001307
ORF1ab/nsp691V91MGtgAtg33B.1.1600.000094
ORF1ab/nsp691V91MGtgAtg22AY.290.000032
ORF1ab/nsp691V91MGtgAtg22AY.330.000134
ORF1ab/nsp691V91MGtgAtg22AY.390.000049
ORF1ab/nsp691V91MGtgAtg22AY.46.60.000144
ORF1ab/nsp691V91MGtgAtg11AY.1080.001103
ORF1ab/nsp691V91MGtgAtg11AY.1190.000035
ORF1ab/nsp691V91MGtgAtg11AY.1200.000037
ORF1ab/nsp691V91MGtgAtg11AY.150.002222
ORF1ab/nsp691V91MGtgAtg11AY.230.00007
ORF1ab/nsp691V91MGtgAtg11AY.39.10.00004
ORF1ab/nsp691V91MGtgAtg11AY.4.40.000409
ORF1ab/nsp691V91MGtgAtg11AY.670.000464
ORF1ab/nsp691V91MGtgAtg11AY.730.000665
ORF1ab/nsp691V91MGtgAtg11AY.740.000116
ORF1ab/nsp691V91MGtgAtg11AY.9.20.000037
ORF1ab/nsp691V91MGtgAtg11AY.99.20.000092
ORF1ab/nsp691V91MGtgAtg11B.1.1.2540.011236
ORF1ab/nsp691V91MGtgAtg11B.1.1.2840.000107
ORF1ab/nsp691V91MGtgAtg11B.1.1.3110.000358
ORF1ab/nsp691V91MGtgAtg11B.1.177.730.000566
ORF1ab/nsp691V91MGtgAtg11B.1.258.170.000104
ORF1ab/nsp691V91MGtgAtg11B.1.36.290.000517
ORF1ab/nsp691V91MGtgAtg11B.1.4270.00005
ORF1ab/nsp691V91MGtgAtg11B.1.4290.000024
ORF1ab/nsp691V91MGtgAtg11B.1.5950.000261

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.