CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 84 | V84V | V3653V | syn | gtC | gtT | 4541 | 4421 | 0.973574 | 11222-11224 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 4421 | 4541 | All | 0.000846 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 865 | 865 | B.1.36.1 | 0.986317 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 475 | 476 | B.1.617.2 | 0.001789 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 381 | 381 | B.1.427 | 0.01924 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 326 | 326 | B.1.398 | 0.970238 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 292 | 294 | B.1.1.7 | 0.000261 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 289 | 289 | AY.25 | 0.001738 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 256 | 264 | AY.43 | 0.001134 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 252 | 258 | B.1 | 0.002308 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 133 | 165 | AY.4 | 0.000207 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 78 | 78 | B.1.214.2 | 0.046763 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 75 | 75 | AY.103 | 0.000466 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 69 | 69 | B.1.351 | 0.002051 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 55 | 55 | AY.102 | 0.001458 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 54 | 54 | B.1.177.63 | 0.145946 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 53 | 53 | AY.119 | 0.001871 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 51 | 51 | B.1.1.311 | 0.018266 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 45 | 45 | AY.44 | 0.000274 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 43 | 43 | AY.93 | 0.011742 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 41 | 41 | AY.3 | 0.000408 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 35 | 35 | B.1.2 | 0.000308 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 31 | 31 | P.1 | 0.000488 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 30 | 30 | AY.36 | 0.004446 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 29 | 30 | B.1.1 | 0.000526 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 27 | 27 | AY.42 | 0.001086 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 25 | 25 | AY.39 | 0.000618 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 23 | 23 | B.1.177 | 0.000303 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 18 | 18 | AY.75 | 0.001008 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 15 | 15 | B.1.429 | 0.000353 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 14 | AY.120 | 0.000074 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 14 | 14 | AY.29 | 0.000221 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 13 | 13 | AY.23 | 0.000907 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 12 | 12 | B.1.1.28 | 0.003735 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 10 | AY.47 | 0.000031 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 10 | 10 | B.1.631 | 0.03367 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 7 | 7 | B.1.351.2 | 0.002118 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 7 | 7 | B.1.620 | 0.006623 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 5 | 6 | AY.20 | 0.000194 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 3 | 5 | AY.58 | 0.002722 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 4 | 5 | B.1.596 | 0.000349 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 4 | 4 | AY.90 | 0.002738 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 3 | AY.39.1 | 0.000079 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 3 | 3 | AY.82 | 0.004071 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 3 | AY.87 | 0.001665 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 3 | 3 | B.1.12 | 0.024 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | A.2.5.1 | 0.009615 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | AY.49 | 0.00639 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.1.328 | 0.033898 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.177.2 | 0.009091 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.177.31 | 0.022989 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.199 | 0.008264 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.511 | 0.068966 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | P.5 | 0.027397 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.217 | 0.003636 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.224 | 0.025 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp6 | 84 | V84V | gtC | gtT | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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