CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 84 & Codon = gtT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp684V84VV3653VsyngtCgtT454144210.97357411222-11224

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp684V84VgtCgtT44214541All0.000846
ORF1ab/nsp684V84VgtCgtT865865B.1.36.10.986317
ORF1ab/nsp684V84VgtCgtT475476B.1.617.20.001789
ORF1ab/nsp684V84VgtCgtT381381B.1.4270.01924
ORF1ab/nsp684V84VgtCgtT326326B.1.3980.970238
ORF1ab/nsp684V84VgtCgtT292294B.1.1.70.000261
ORF1ab/nsp684V84VgtCgtT289289AY.250.001738
ORF1ab/nsp684V84VgtCgtT256264AY.430.001134
ORF1ab/nsp684V84VgtCgtT252258B.10.002308
ORF1ab/nsp684V84VgtCgtT133165AY.40.000207
ORF1ab/nsp684V84VgtCgtT7878B.1.214.20.046763
ORF1ab/nsp684V84VgtCgtT7575AY.1030.000466
ORF1ab/nsp684V84VgtCgtT6969B.1.3510.002051
ORF1ab/nsp684V84VgtCgtT5555AY.1020.001458
ORF1ab/nsp684V84VgtCgtT5454B.1.177.630.145946
ORF1ab/nsp684V84VgtCgtT5353AY.1190.001871
ORF1ab/nsp684V84VgtCgtT5151B.1.1.3110.018266
ORF1ab/nsp684V84VgtCgtT4545AY.440.000274
ORF1ab/nsp684V84VgtCgtT4343AY.930.011742
ORF1ab/nsp684V84VgtCgtT4141AY.30.000408
ORF1ab/nsp684V84VgtCgtT3535B.1.20.000308
ORF1ab/nsp684V84VgtCgtT3131P.10.000488
ORF1ab/nsp684V84VgtCgtT3030AY.360.004446
ORF1ab/nsp684V84VgtCgtT2930B.1.10.000526
ORF1ab/nsp684V84VgtCgtT2727AY.420.001086
ORF1ab/nsp684V84VgtCgtT2525AY.390.000618
ORF1ab/nsp684V84VgtCgtT2323B.1.1770.000303
ORF1ab/nsp684V84VgtCgtT1818AY.750.001008
ORF1ab/nsp684V84VgtCgtT1515B.1.4290.000353
ORF1ab/nsp684V84VgtCgtT214AY.1200.000074
ORF1ab/nsp684V84VgtCgtT1414AY.290.000221
ORF1ab/nsp684V84VgtCgtT1313AY.230.000907
ORF1ab/nsp684V84VgtCgtT1212B.1.1.280.003735
ORF1ab/nsp684V84VgtCgtT1111B.1.1600.000343
ORF1ab/nsp684V84VgtCgtT1111B.1.6210.000974
ORF1ab/nsp684V84VgtCgtT110AY.470.000031
ORF1ab/nsp684V84VgtCgtT1010B.1.6310.03367
ORF1ab/nsp684V84VgtCgtT88AY.260.000226
ORF1ab/nsp684V84VgtCgtT88AY.460.000833
ORF1ab/nsp684V84VgtCgtT77AY.9.10.000586
ORF1ab/nsp684V84VgtCgtT77B.1.351.20.002118
ORF1ab/nsp684V84VgtCgtT77B.1.6200.006623
ORF1ab/nsp684V84VgtCgtT56AY.200.000194
ORF1ab/nsp684V84VgtCgtT66B.1.1.2220.001224
ORF1ab/nsp684V84VgtCgtT66B.1.3110.001647
ORF1ab/nsp684V84VgtCgtT66B.1.5260.000141
ORF1ab/nsp684V84VgtCgtT35AY.580.002722
ORF1ab/nsp684V84VgtCgtT55B.1.2430.000348
ORF1ab/nsp684V84VgtCgtT55B.1.2580.000333
ORF1ab/nsp684V84VgtCgtT45B.1.5960.000349
ORF1ab/nsp684V84VgtCgtT55C.370.00058
ORF1ab/nsp684V84VgtCgtT44AY.10.001583
ORF1ab/nsp684V84VgtCgtT44AY.450.000487
ORF1ab/nsp684V84VgtCgtT44AY.50.000083
ORF1ab/nsp684V84VgtCgtT44AY.900.002738
ORF1ab/nsp684V84VgtCgtT44B.1.4000.001716
ORF1ab/nsp684V84VgtCgtT44P.1.140.000191
ORF1ab/nsp684V84VgtCgtT33AY.1000.000138
ORF1ab/nsp684V84VgtCgtT33AY.1090.002219
ORF1ab/nsp684V84VgtCgtT33AY.1170.000254
ORF1ab/nsp684V84VgtCgtT23AY.39.10.000079
ORF1ab/nsp684V84VgtCgtT33AY.4.2.10.000447
ORF1ab/nsp684V84VgtCgtT33AY.480.001395
ORF1ab/nsp684V84VgtCgtT33AY.820.004071
ORF1ab/nsp684V84VgtCgtT23AY.870.001665
ORF1ab/nsp684V84VgtCgtT33AY.980.000237
ORF1ab/nsp684V84VgtCgtT33B.1.1.3060.001315
ORF1ab/nsp684V84VgtCgtT33B.1.120.024
ORF1ab/nsp684V84VgtCgtT33B.1.2210.000213
ORF1ab/nsp684V84VgtCgtT33B.1.5090.002597
ORF1ab/nsp684V84VgtCgtT33B.1.5510.003871
ORF1ab/nsp684V84VgtCgtT22A.2.5.10.009615
ORF1ab/nsp684V84VgtCgtT22AY.1060.00067
ORF1ab/nsp684V84VgtCgtT22AY.320.001065
ORF1ab/nsp684V84VgtCgtT22AY.4.40.000818
ORF1ab/nsp684V84VgtCgtT22AY.410.000588
ORF1ab/nsp684V84VgtCgtT22AY.490.00639
ORF1ab/nsp684V84VgtCgtT22AY.840.000875
ORF1ab/nsp684V84VgtCgtT22AY.98.10.000097
ORF1ab/nsp684V84VgtCgtT22AY.990.002099
ORF1ab/nsp684V84VgtCgtT22AY.99.20.000184
ORF1ab/nsp684V84VgtCgtT22B.1.1.1920.004619
ORF1ab/nsp684V84VgtCgtT22B.1.1.2910.001485
ORF1ab/nsp684V84VgtCgtT22B.1.1.3280.033898
ORF1ab/nsp684V84VgtCgtT22B.1.1.3480.001592
ORF1ab/nsp684V84VgtCgtT22B.1.1.370.000386
ORF1ab/nsp684V84VgtCgtT22B.1.1.390.001019
ORF1ab/nsp684V84VgtCgtT22B.1.1.4340.000697
ORF1ab/nsp684V84VgtCgtT22B.1.177.20.009091
ORF1ab/nsp684V84VgtCgtT22B.1.177.310.022989
ORF1ab/nsp684V84VgtCgtT22B.1.1990.008264
ORF1ab/nsp684V84VgtCgtT22B.1.2340.000264
ORF1ab/nsp684V84VgtCgtT22B.1.2400.000431
ORF1ab/nsp684V84VgtCgtT22B.1.360.000292
ORF1ab/nsp684V84VgtCgtT22B.1.5110.068966
ORF1ab/nsp684V84VgtCgtT22B.1.5750.000607
ORF1ab/nsp684V84VgtCgtT22B.1.5770.001375
ORF1ab/nsp684V84VgtCgtT22P.1.170.000324
ORF1ab/nsp684V84VgtCgtT22P.50.027397
ORF1ab/nsp684V84VgtCgtT22Q.30.00029
ORF1ab/nsp684V84VgtCgtT11A.2.50.000499
ORF1ab/nsp684V84VgtCgtT11AY.100.00053
ORF1ab/nsp684V84VgtCgtT11AY.1050.000643
ORF1ab/nsp684V84VgtCgtT11AY.1110.000183
ORF1ab/nsp684V84VgtCgtT11AY.1140.000231
ORF1ab/nsp684V84VgtCgtT11AY.1210.000135
ORF1ab/nsp684V84VgtCgtT11AY.130.000161
ORF1ab/nsp684V84VgtCgtT11AY.16.10.00047
ORF1ab/nsp684V84VgtCgtT11AY.29.10.000221
ORF1ab/nsp684V84VgtCgtT11AY.3.10.000085
ORF1ab/nsp684V84VgtCgtT11AY.330.000067
ORF1ab/nsp684V84VgtCgtT11AY.39.1.10.000725
ORF1ab/nsp684V84VgtCgtT11AY.4.10.000737
ORF1ab/nsp684V84VgtCgtT11AY.4.20.000022
ORF1ab/nsp684V84VgtCgtT11AY.46.10.001027
ORF1ab/nsp684V84VgtCgtT11AY.46.40.000165
ORF1ab/nsp684V84VgtCgtT11AY.46.60.000072
ORF1ab/nsp684V84VgtCgtT11AY.530.000288
ORF1ab/nsp684V84VgtCgtT11AY.60.000041
ORF1ab/nsp684V84VgtCgtT11AY.610.000105
ORF1ab/nsp684V84VgtCgtT11AY.630.000387
ORF1ab/nsp684V84VgtCgtT11AY.690.000187
ORF1ab/nsp684V84VgtCgtT11AY.70.000196
ORF1ab/nsp684V84VgtCgtT11AY.7.10.000113
ORF1ab/nsp684V84VgtCgtT11AY.700.000209
ORF1ab/nsp684V84VgtCgtT11AY.740.000116
ORF1ab/nsp684V84VgtCgtT11AY.790.001211
ORF1ab/nsp684V84VgtCgtT11B.1.1.1380.006061
ORF1ab/nsp684V84VgtCgtT11B.1.1.1760.000439
ORF1ab/nsp684V84VgtCgtT11B.1.1.1890.001513
ORF1ab/nsp684V84VgtCgtT11B.1.1.1960.005714
ORF1ab/nsp684V84VgtCgtT11B.1.1.2100.005714
ORF1ab/nsp684V84VgtCgtT11B.1.1.2140.000055
ORF1ab/nsp684V84VgtCgtT11B.1.1.2170.003636
ORF1ab/nsp684V84VgtCgtT11B.1.1.250.000569
ORF1ab/nsp684V84VgtCgtT11B.1.1.2840.000107
ORF1ab/nsp684V84VgtCgtT11B.1.1.2940.001266
ORF1ab/nsp684V84VgtCgtT11B.1.1.3030.002762
ORF1ab/nsp684V84VgtCgtT11B.1.1.3350.012987
ORF1ab/nsp684V84VgtCgtT11B.1.1.3690.000446
ORF1ab/nsp684V84VgtCgtT11B.1.1.4200.001006
ORF1ab/nsp684V84VgtCgtT11B.1.1.4480.002033
ORF1ab/nsp684V84VgtCgtT11B.1.1.4640.001473
ORF1ab/nsp684V84VgtCgtT11B.1.1.510.001718
ORF1ab/nsp684V84VgtCgtT11B.1.1.5260.003546
ORF1ab/nsp684V84VgtCgtT11B.1.1.630.000386
ORF1ab/nsp684V84VgtCgtT11B.1.1.700.000341
ORF1ab/nsp684V84VgtCgtT11B.1.1100.004525
ORF1ab/nsp684V84VgtCgtT11B.1.177.100.000878
ORF1ab/nsp684V84VgtCgtT11B.1.177.210.000076
ORF1ab/nsp684V84VgtCgtT11B.1.177.50.001242
ORF1ab/nsp684V84VgtCgtT11B.1.177.600.000218
ORF1ab/nsp684V84VgtCgtT11B.1.177.620.001192
ORF1ab/nsp684V84VgtCgtT11B.1.177.750.001041
ORF1ab/nsp684V84VgtCgtT11B.1.177.810.000189
ORF1ab/nsp684V84VgtCgtT11B.1.177.860.000183
ORF1ab/nsp684V84VgtCgtT11B.1.2240.025
ORF1ab/nsp684V84VgtCgtT11B.1.2320.000537
ORF1ab/nsp684V84VgtCgtT11B.1.2390.001221
ORF1ab/nsp684V84VgtCgtT11B.1.258.170.000104
ORF1ab/nsp684V84VgtCgtT11B.1.36.180.00042
ORF1ab/nsp684V84VgtCgtT11B.1.36.290.000517
ORF1ab/nsp684V84VgtCgtT11B.1.36.80.001
ORF1ab/nsp684V84VgtCgtT11B.1.3970.004854
ORF1ab/nsp684V84VgtCgtT11B.1.4090.000781
ORF1ab/nsp684V84VgtCgtT11B.1.4560.003268
ORF1ab/nsp684V84VgtCgtT11B.1.4710.002732
ORF1ab/nsp684V84VgtCgtT11B.1.5200.021739
ORF1ab/nsp684V84VgtCgtT11B.1.5330.009615
ORF1ab/nsp684V84VgtCgtT11B.1.5660.019231
ORF1ab/nsp684V84VgtCgtT11B.1.5670.003333
ORF1ab/nsp684V84VgtCgtT11B.1.5900.004545
ORF1ab/nsp684V84VgtCgtT11B.1.6370.000073
ORF1ab/nsp684V84VgtCgtT11D.20.000075
ORF1ab/nsp684V84VgtCgtT11N.90.005952
ORF1ab/nsp684V84VgtCgtT11P.30.001595
ORF1ab/nsp684V84VgtCgtT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.