CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 84 & Codon = Ttc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp684V84FV3653FnonsynGtcTtc477347660.99853311222-11224

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp684V84FGtcTtc47664773All0.000912
ORF1ab/nsp684V84FGtcTtc14861486B.10.013611
ORF1ab/nsp684V84FGtcTtc623629B.1.1.5230.973437
ORF1ab/nsp684V84FGtcTtc570570B.1.36.310.998249
ORF1ab/nsp684V84FGtcTtc416416B.1.1.3740.988124
ORF1ab/nsp684V84FGtcTtc177177B.1.10.003211
ORF1ab/nsp684V84FGtcTtc169169B.1.6260.965714
ORF1ab/nsp684V84FGtcTtc145145B.1.360.021156
ORF1ab/nsp684V84FGtcTtc132132B.1.6320.885906
ORF1ab/nsp684V84FGtcTtc8888B.1.1.2220.017952
ORF1ab/nsp684V84FGtcTtc8080B.1.1600.002495
ORF1ab/nsp684V84FGtcTtc7979B.1.1.3060.034634
ORF1ab/nsp684V84FGtcTtc7676B.1.1.1630.580153
ORF1ab/nsp684V84FGtcTtc6565B.1.617.20.000245
ORF1ab/nsp684V84FGtcTtc5959B.1.2360.12115
ORF1ab/nsp684V84FGtcTtc3939B.1.20.000343
ORF1ab/nsp684V84FGtcTtc3838AY.4.20.000824
ORF1ab/nsp684V84FGtcTtc3232B.1.1770.000421
ORF1ab/nsp684V84FGtcTtc3131B.1.36.160.04416
ORF1ab/nsp684V84FGtcTtc3131B.1.5400.300971
ORF1ab/nsp684V84FGtcTtc1717B.1.6090.00815
ORF1ab/nsp684V84FGtcTtc1616AY.430.000071
ORF1ab/nsp684V84FGtcTtc1616B.1.36.290.008277
ORF1ab/nsp684V84FGtcTtc1515B.1.1.5000.3
ORF1ab/nsp684V84FGtcTtc1515B.1.5540.066079
ORF1ab/nsp684V84FGtcTtc1414B.1.2580.000932
ORF1ab/nsp684V84FGtcTtc1313B.1.1.5190.000516
ORF1ab/nsp684V84FGtcTtc1313B.1.36.80.013
ORF1ab/nsp684V84FGtcTtc1212B.1.2400.002587
ORF1ab/nsp684V84FGtcTtc1111AY.1160.003155
ORF1ab/nsp684V84FGtcTtc99B.1.1.120.067164
ORF1ab/nsp684V84FGtcTtc88AY.440.000049
ORF1ab/nsp684V84FGtcTtc88B.1.1990.033058
ORF1ab/nsp684V84FGtcTtc77AY.1050.004502
ORF1ab/nsp684V84FGtcTtc77AY.420.000282
ORF1ab/nsp684V84FGtcTtc77AY.920.002011
ORF1ab/nsp684V84FGtcTtc77B.1.1.2410.014493
ORF1ab/nsp684V84FGtcTtc77B.1.1.470.037433
ORF1ab/nsp684V84FGtcTtc77B.1.36.170.003458
ORF1ab/nsp684V84FGtcTtc66AY.40.000009
ORF1ab/nsp684V84FGtcTtc66B.1.1.1740.02027
ORF1ab/nsp684V84FGtcTtc66B.1.1.1920.013857
ORF1ab/nsp684V84FGtcTtc66B.1.1.250.003411
ORF1ab/nsp684V84FGtcTtc66B.1.1310.052632
ORF1ab/nsp684V84FGtcTtc66B.1.177.570.001686
ORF1ab/nsp684V84FGtcTtc66B.1.230.036364
ORF1ab/nsp684V84FGtcTtc66B.1.4080.02214
ORF1ab/nsp684V84FGtcTtc66B.1.4290.000141
ORF1ab/nsp684V84FGtcTtc66B.1.5380.048387
ORF1ab/nsp684V84FGtcTtc55AY.1210.000677
ORF1ab/nsp684V84FGtcTtc55B.1.1.1890.007564
ORF1ab/nsp684V84FGtcTtc55B.1.1.3880.227273
ORF1ab/nsp684V84FGtcTtc55B.1.1.4620.043103
ORF1ab/nsp684V84FGtcTtc44AY.1020.000106
ORF1ab/nsp684V84FGtcTtc44AY.98.10.000194
ORF1ab/nsp684V84FGtcTtc44B.1.1.1610.014134
ORF1ab/nsp684V84FGtcTtc44B.1.1.2630.006231
ORF1ab/nsp684V84FGtcTtc44B.1.1.70.000004
ORF1ab/nsp684V84FGtcTtc44B.1.2430.000278
ORF1ab/nsp684V84FGtcTtc33B.1.1.1340.034091
ORF1ab/nsp684V84FGtcTtc33B.1.1.2160.002671
ORF1ab/nsp684V84FGtcTtc33B.1.1.4320.003797
ORF1ab/nsp684V84FGtcTtc33B.1.1.5060.111111
ORF1ab/nsp684V84FGtcTtc33B.1.36.220.003623
ORF1ab/nsp684V84FGtcTtc33B.1.4390.017751
ORF1ab/nsp684V84FGtcTtc33B.1.5960.000261
ORF1ab/nsp684V84FGtcTtc22AY.50.000041
ORF1ab/nsp684V84FGtcTtc22B.1.1.1980.002937
ORF1ab/nsp684V84FGtcTtc22B.1.1.280.000622
ORF1ab/nsp684V84FGtcTtc22B.1.1.2910.001485
ORF1ab/nsp684V84FGtcTtc22B.1.1.3350.025974
ORF1ab/nsp684V84FGtcTtc22B.1.1.4090.005666
ORF1ab/nsp684V84FGtcTtc22B.1.1.540.006042
ORF1ab/nsp684V84FGtcTtc22B.1.1170.025
ORF1ab/nsp684V84FGtcTtc22B.1.2210.000142
ORF1ab/nsp684V84FGtcTtc22B.1.36.100.009569
ORF1ab/nsp684V84FGtcTtc22B.1.3810.015625
ORF1ab/nsp684V84FGtcTtc22B.1.3960.001411
ORF1ab/nsp684V84FGtcTtc22B.1.5270.007407
ORF1ab/nsp684V84FGtcTtc22B.1.6230.001073
ORF1ab/nsp684V84FGtcTtc11A.190.009434
ORF1ab/nsp684V84FGtcTtc11A.2.20.001689
ORF1ab/nsp684V84FGtcTtc11A.280.002646
ORF1ab/nsp684V84FGtcTtc11A.300.142857
ORF1ab/nsp684V84FGtcTtc11AE.40.043478
ORF1ab/nsp684V84FGtcTtc11AY.100.00053
ORF1ab/nsp684V84FGtcTtc11AY.1030.000006
ORF1ab/nsp684V84FGtcTtc11AY.1170.000085
ORF1ab/nsp684V84FGtcTtc11AY.160.00038
ORF1ab/nsp684V84FGtcTtc11AY.250.000006
ORF1ab/nsp684V84FGtcTtc11AY.30.00001
ORF1ab/nsp684V84FGtcTtc11AY.330.000067
ORF1ab/nsp684V84FGtcTtc11AY.460.000104
ORF1ab/nsp684V84FGtcTtc11AY.46.10.001027
ORF1ab/nsp684V84FGtcTtc11AY.46.40.000165
ORF1ab/nsp684V84FGtcTtc11AY.750.000056
ORF1ab/nsp684V84FGtcTtc11AY.780.001541
ORF1ab/nsp684V84FGtcTtc11AY.980.000079
ORF1ab/nsp684V84FGtcTtc11B.1.1.1350.004695
ORF1ab/nsp684V84FGtcTtc11B.1.1.1760.000439
ORF1ab/nsp684V84FGtcTtc11B.1.1.1940.00495
ORF1ab/nsp684V84FGtcTtc11B.1.1.2000.007463
ORF1ab/nsp684V84FGtcTtc11B.1.1.2820.011628
ORF1ab/nsp684V84FGtcTtc11B.1.1.330.000421
ORF1ab/nsp684V84FGtcTtc11B.1.1.340.013158
ORF1ab/nsp684V84FGtcTtc11B.1.1.3480.000796
ORF1ab/nsp684V84FGtcTtc11B.1.1.3630.005988
ORF1ab/nsp684V84FGtcTtc11B.1.1.370.000193
ORF1ab/nsp684V84FGtcTtc11B.1.1.3720.000689
ORF1ab/nsp684V84FGtcTtc11B.1.1.390.00051
ORF1ab/nsp684V84FGtcTtc11B.1.1.3970.002252
ORF1ab/nsp684V84FGtcTtc11B.1.1.3980.003226
ORF1ab/nsp684V84FGtcTtc11B.1.1.4370.010417
ORF1ab/nsp684V84FGtcTtc11B.1.1.440.00241
ORF1ab/nsp684V84FGtcTtc11B.1.1.4860.001577
ORF1ab/nsp684V84FGtcTtc11B.1.1.560.017857
ORF1ab/nsp684V84FGtcTtc11B.1.1.630.000386
ORF1ab/nsp684V84FGtcTtc11B.1.1.990.02381
ORF1ab/nsp684V84FGtcTtc11B.1.1130.015625
ORF1ab/nsp684V84FGtcTtc11B.1.1280.000635
ORF1ab/nsp684V84FGtcTtc11B.1.177.350.000691
ORF1ab/nsp684V84FGtcTtc11B.1.177.650.000665
ORF1ab/nsp684V84FGtcTtc11B.1.177.730.000566
ORF1ab/nsp684V84FGtcTtc11B.1.177.810.000189
ORF1ab/nsp684V84FGtcTtc11B.1.2100.002132
ORF1ab/nsp684V84FGtcTtc11B.1.2140.003663
ORF1ab/nsp684V84FGtcTtc11B.1.2290.009709
ORF1ab/nsp684V84FGtcTtc11B.1.2340.000132
ORF1ab/nsp684V84FGtcTtc11B.1.2470.014925
ORF1ab/nsp684V84FGtcTtc11B.1.3110.000275
ORF1ab/nsp684V84FGtcTtc11B.1.3290.000608
ORF1ab/nsp684V84FGtcTtc11B.1.3360.002439
ORF1ab/nsp684V84FGtcTtc11B.1.3500.002933
ORF1ab/nsp684V84FGtcTtc11B.1.3510.00003
ORF1ab/nsp684V84FGtcTtc11B.1.3660.004878
ORF1ab/nsp684V84FGtcTtc11B.1.3870.04
ORF1ab/nsp684V84FGtcTtc11B.1.3890.001002
ORF1ab/nsp684V84FGtcTtc11B.1.4000.000429
ORF1ab/nsp684V84FGtcTtc11B.1.4040.001302
ORF1ab/nsp684V84FGtcTtc11B.1.4260.001009
ORF1ab/nsp684V84FGtcTtc11B.1.4380.006536
ORF1ab/nsp684V84FGtcTtc11B.1.438.10.000107
ORF1ab/nsp684V84FGtcTtc11B.1.4850.014925
ORF1ab/nsp684V84FGtcTtc11B.1.5050.004386
ORF1ab/nsp684V84FGtcTtc11B.1.5820.000491
ORF1ab/nsp684V84FGtcTtc11B.1.5950.000261
ORF1ab/nsp684V84FGtcTtc11B.1.780.008547
ORF1ab/nsp684V84FGtcTtc11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.