CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 84 & Codon = Atc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp684V84IV3653InonsynGtcAtc345345111222-11224

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp684V84IGtcAtc345345All0.000066
ORF1ab/nsp684V84IGtcAtc6565B.1.20.000572
ORF1ab/nsp684V84IGtcAtc4747AY.250.000283
ORF1ab/nsp684V84IGtcAtc4040AY.430.000177
ORF1ab/nsp684V84IGtcAtc3737B.1.1.70.000033
ORF1ab/nsp684V84IGtcAtc3232B.1.617.20.00012
ORF1ab/nsp684V84IGtcAtc1212B0.001534
ORF1ab/nsp684V84IGtcAtc1111AY.1110.002015
ORF1ab/nsp684V84IGtcAtc1010B.10.000092
ORF1ab/nsp684V84IGtcAtc88AY.330.000534
ORF1ab/nsp684V84IGtcAtc77B.1.1770.000092
ORF1ab/nsp684V84IGtcAtc66AY.60.000247
ORF1ab/nsp684V84IGtcAtc66AY.910.004383
ORF1ab/nsp684V84IGtcAtc66B.4.10.113208
ORF1ab/nsp684V84IGtcAtc55AY.40.000008
ORF1ab/nsp684V84IGtcAtc55B.1.6370.000365
ORF1ab/nsp684V84IGtcAtc33AY.300.001187
ORF1ab/nsp684V84IGtcAtc33AY.460.000312
ORF1ab/nsp684V84IGtcAtc33B.1.258.170.000312
ORF1ab/nsp684V84IGtcAtc22AY.1030.000012
ORF1ab/nsp684V84IGtcAtc22AY.390.000049
ORF1ab/nsp684V84IGtcAtc22AY.440.000012
ORF1ab/nsp684V84IGtcAtc22AY.98.10.000097
ORF1ab/nsp684V84IGtcAtc22B.1.1600.000062
ORF1ab/nsp684V84IGtcAtc22B.1.4270.000101
ORF1ab/nsp684V84IGtcAtc22B.1.5260.000047
ORF1ab/nsp684V84IGtcAtc22B.400.000729
ORF1ab/nsp684V84IGtcAtc22P.10.000032
ORF1ab/nsp684V84IGtcAtc11A.2.50.000499
ORF1ab/nsp684V84IGtcAtc11AY.1190.000035
ORF1ab/nsp684V84IGtcAtc11AY.1200.000037
ORF1ab/nsp684V84IGtcAtc11AY.200.000039
ORF1ab/nsp684V84IGtcAtc11AY.50.000021
ORF1ab/nsp684V84IGtcAtc11AY.5.40.000277
ORF1ab/nsp684V84IGtcAtc11AY.520.000814
ORF1ab/nsp684V84IGtcAtc11AY.530.000288
ORF1ab/nsp684V84IGtcAtc11B.1.10.000018
ORF1ab/nsp684V84IGtcAtc11B.1.1.2140.000055
ORF1ab/nsp684V84IGtcAtc11B.1.1.3180.000302
ORF1ab/nsp684V84IGtcAtc11B.1.1.330.000421
ORF1ab/nsp684V84IGtcAtc11B.1.1.630.000386
ORF1ab/nsp684V84IGtcAtc11B.1.177.810.000189
ORF1ab/nsp684V84IGtcAtc11B.1.2060.000816
ORF1ab/nsp684V84IGtcAtc11B.1.2390.001221
ORF1ab/nsp684V84IGtcAtc11B.1.4280.00102
ORF1ab/nsp684V84IGtcAtc11B.1.4360.001029
ORF1ab/nsp684V84IGtcAtc11D.20.000075
ORF1ab/nsp684V84IGtcAtc11P.1.70.000319
ORF1ab/nsp684V84IGtcAtc11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.