CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 84

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp684V84FV3653FnonsynGtcTtc477347660.99853311222-11224
ORF1ab/nsp684V84FV3653FnonsynGtCTtT477370.0014665811222-11224
ORF1ab/nsp684V84VV3653VsyngtCgtT454144210.97357411222-11224
ORF1ab/nsp684V84VV3653VsyngtCgtA45411110.02444411222-11224
ORF1ab/nsp684V84VV3653VsyngtCgtG454190.0019819411222-11224
ORF1ab/nsp684V84IV3653InonsynGtcAtc345345111222-11224
ORF1ab/nsp684V84AV3653AnonsyngTcgCc9191111222-11224
ORF1ab/nsp684V84delV3653deldelGTC---2222111222-11224
ORF1ab/nsp684V84LV3653LnonsynGtcCtc88111222-11224
ORF1ab/nsp684V84DV3653DnonsyngTcgAc22111222-11224
ORF1ab/nsp684V84del1V3653del1delGTC-AA11111222-11224
ORF1ab/nsp684V84NV3653NnonsynGTcAAc11111222-11224

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp684V84FGtcTtc47664773All0.000912
ORF1ab/nsp684V84FGtCTtT74773All0.000001
ORF1ab/nsp684V84VgtCgtT44214541All0.000846
ORF1ab/nsp684V84VgtCgtA1114541All0.000021
ORF1ab/nsp684V84VgtCgtG94541All0.000002
ORF1ab/nsp684V84FGtcTtc14861486B.10.013611
ORF1ab/nsp684V84VgtCgtT865865B.1.36.10.986317
ORF1ab/nsp684V84FGtcTtc623629B.1.1.5230.973437
ORF1ab/nsp684V84FGtCTtT6629B.1.1.5230.009375
ORF1ab/nsp684V84FGtcTtc570570B.1.36.310.998249
ORF1ab/nsp684V84VgtCgtT475476B.1.617.20.001789
ORF1ab/nsp684V84VgtCgtA1476B.1.617.20.000004
ORF1ab/nsp684V84FGtcTtc416416B.1.1.3740.988124
ORF1ab/nsp684V84VgtCgtT381381B.1.4270.01924
ORF1ab/nsp684V84IGtcAtc345345All0.000066
ORF1ab/nsp684V84VgtCgtT326326B.1.3980.970238
ORF1ab/nsp684V84VgtCgtT292294B.1.1.70.000261
ORF1ab/nsp684V84VgtCgtA2294B.1.1.70.000002
ORF1ab/nsp684V84VgtCgtT289289AY.250.001738
ORF1ab/nsp684V84VgtCgtT256264AY.430.001134
ORF1ab/nsp684V84VgtCgtA8264AY.430.000035
ORF1ab/nsp684V84VgtCgtT252258B.10.002308
ORF1ab/nsp684V84VgtCgtA6258B.10.000055
ORF1ab/nsp684V84FGtcTtc177177B.1.10.003211
ORF1ab/nsp684V84FGtcTtc169169B.1.6260.965714
ORF1ab/nsp684V84VgtCgtT133165AY.40.000207
ORF1ab/nsp684V84VgtCgtA32165AY.40.00005
ORF1ab/nsp684V84FGtcTtc145145B.1.360.021156
ORF1ab/nsp684V84FGtcTtc132132B.1.6320.885906
ORF1ab/nsp684V84AgTcgCc9191All0.000017
ORF1ab/nsp684V84FGtcTtc8888B.1.1.2220.017952
ORF1ab/nsp684V84FGtcTtc8080B.1.1600.002495
ORF1ab/nsp684V84FGtcTtc7979B.1.1.3060.034634
ORF1ab/nsp684V84VgtCgtT7878B.1.214.20.046763
ORF1ab/nsp684V84FGtcTtc7676B.1.1.1630.580153
ORF1ab/nsp684V84VgtCgtT7575AY.1030.000466
ORF1ab/nsp684V84VgtCgtT6969B.1.3510.002051
ORF1ab/nsp684V84IGtcAtc6565B.1.20.000572
ORF1ab/nsp684V84FGtcTtc6565B.1.617.20.000245
ORF1ab/nsp684V84FGtcTtc5959B.1.2360.12115
ORF1ab/nsp684V84VgtCgtT5555AY.1020.001458
ORF1ab/nsp684V84VgtCgtT5454B.1.177.630.145946
ORF1ab/nsp684V84VgtCgtT5353AY.1190.001871
ORF1ab/nsp684V84VgtCgtT5151B.1.1.3110.018266
ORF1ab/nsp684V84IGtcAtc4747AY.250.000283
ORF1ab/nsp684V84VgtCgtT4545AY.440.000274
ORF1ab/nsp684V84VgtCgtT4343AY.930.011742
ORF1ab/nsp684V84VgtCgtT4141AY.30.000408
ORF1ab/nsp684V84IGtcAtc4040AY.430.000177
ORF1ab/nsp684V84FGtcTtc3939B.1.20.000343
ORF1ab/nsp684V84FGtcTtc3838AY.4.20.000824
ORF1ab/nsp684V84IGtcAtc3737B.1.1.70.000033
ORF1ab/nsp684V84VgtCgtT3535B.1.20.000308
ORF1ab/nsp684V84AgTcgCc3232B.1.1.70.000029
ORF1ab/nsp684V84FGtcTtc3232B.1.1770.000421
ORF1ab/nsp684V84IGtcAtc3232B.1.617.20.00012
ORF1ab/nsp684V84FGtcTtc3131B.1.36.160.04416
ORF1ab/nsp684V84FGtcTtc3131B.1.5400.300971
ORF1ab/nsp684V84VgtCgtT3131P.10.000488
ORF1ab/nsp684V84VgtCgtT3030AY.360.004446
ORF1ab/nsp684V84VgtCgtT2930B.1.10.000526
ORF1ab/nsp684V84VgtCgtA130B.1.10.000018
ORF1ab/nsp684V84VgtCgtT2727AY.420.001086
ORF1ab/nsp684V84VgtCgtT2525AY.390.000618
ORF1ab/nsp684V84VgtCgtA2323AY.4.50.002472
ORF1ab/nsp684V84VgtCgtT2323B.1.1770.000303
ORF1ab/nsp684V84delGTC---2222All0.000004
ORF1ab/nsp684V84VgtCgtT1818AY.750.001008
ORF1ab/nsp684V84AgTcgCc1717AY.40.000026
ORF1ab/nsp684V84FGtcTtc1717B.1.6090.00815
ORF1ab/nsp684V84FGtcTtc1616AY.430.000071
ORF1ab/nsp684V84FGtcTtc1616B.1.36.290.008277
ORF1ab/nsp684V84FGtcTtc1515B.1.1.5000.3
ORF1ab/nsp684V84VgtCgtT1515B.1.4290.000353
ORF1ab/nsp684V84FGtcTtc1515B.1.5540.066079
ORF1ab/nsp684V84VgtCgtA1214AY.1200.000446
ORF1ab/nsp684V84VgtCgtT214AY.1200.000074
ORF1ab/nsp684V84VgtCgtT1414AY.290.000221
ORF1ab/nsp684V84FGtcTtc1414B.1.2580.000932
ORF1ab/nsp684V84VgtCgtT1313AY.230.000907
ORF1ab/nsp684V84FGtcTtc1313B.1.1.5190.000516
ORF1ab/nsp684V84FGtcTtc1313B.1.36.80.013
ORF1ab/nsp684V84IGtcAtc1212B0.001534
ORF1ab/nsp684V84VgtCgtT1212B.1.1.280.003735
ORF1ab/nsp684V84FGtcTtc1212B.1.2400.002587
ORF1ab/nsp684V84IGtcAtc1111AY.1110.002015
ORF1ab/nsp684V84FGtcTtc1111AY.1160.003155
ORF1ab/nsp684V84VgtCgtT1111B.1.1600.000343
ORF1ab/nsp684V84VgtCgtT1111B.1.6210.000974
ORF1ab/nsp684V84VgtCgtG910AY.470.00028
ORF1ab/nsp684V84VgtCgtT110AY.470.000031
ORF1ab/nsp684V84IGtcAtc1010B.10.000092
ORF1ab/nsp684V84VgtCgtT1010B.1.6310.03367
ORF1ab/nsp684V84FGtcTtc99B.1.1.120.067164
ORF1ab/nsp684V84LGtcCtc88All0.000002
ORF1ab/nsp684V84VgtCgtT88AY.260.000226
ORF1ab/nsp684V84IGtcAtc88AY.330.000534
ORF1ab/nsp684V84FGtcTtc88AY.440.000049
ORF1ab/nsp684V84VgtCgtT88AY.460.000833
ORF1ab/nsp684V84FGtcTtc88B.1.1990.033058
ORF1ab/nsp684V84FGtcTtc77AY.1050.004502
ORF1ab/nsp684V84FGtcTtc77AY.420.000282
ORF1ab/nsp684V84VgtCgtT77AY.9.10.000586
ORF1ab/nsp684V84FGtcTtc77AY.920.002011
ORF1ab/nsp684V84FGtcTtc77B.1.1.2410.014493
ORF1ab/nsp684V84FGtcTtc77B.1.1.470.037433
ORF1ab/nsp684V84IGtcAtc77B.1.1770.000092
ORF1ab/nsp684V84VgtCgtT77B.1.351.20.002118
ORF1ab/nsp684V84FGtcTtc77B.1.36.170.003458
ORF1ab/nsp684V84VgtCgtT77B.1.6200.006623
ORF1ab/nsp684V84VgtCgtT56AY.200.000194
ORF1ab/nsp684V84VgtCgtA16AY.200.000039
ORF1ab/nsp684V84FGtcTtc66AY.40.000009
ORF1ab/nsp684V84IGtcAtc66AY.60.000247
ORF1ab/nsp684V84IGtcAtc66AY.910.004383
ORF1ab/nsp684V84AgTcgCc66AY.950.004566
ORF1ab/nsp684V84FGtcTtc66B.1.1.1740.02027
ORF1ab/nsp684V84FGtcTtc66B.1.1.1920.013857
ORF1ab/nsp684V84VgtCgtT66B.1.1.2220.001224
ORF1ab/nsp684V84FGtcTtc66B.1.1.250.003411
ORF1ab/nsp684V84delGTC---66B.1.1.70.000005
ORF1ab/nsp684V84FGtcTtc66B.1.1310.052632
ORF1ab/nsp684V84FGtcTtc66B.1.177.570.001686
ORF1ab/nsp684V84FGtcTtc66B.1.230.036364
ORF1ab/nsp684V84VgtCgtT66B.1.3110.001647
ORF1ab/nsp684V84FGtcTtc66B.1.4080.02214
ORF1ab/nsp684V84FGtcTtc66B.1.4290.000141
ORF1ab/nsp684V84VgtCgtT66B.1.5260.000141
ORF1ab/nsp684V84FGtcTtc66B.1.5380.048387
ORF1ab/nsp684V84IGtcAtc66B.4.10.113208
ORF1ab/nsp684V84VgtCgtA55A0.001935
ORF1ab/nsp684V84FGtcTtc55AY.1210.000677
ORF1ab/nsp684V84IGtcAtc55AY.40.000008
ORF1ab/nsp684V84VgtCgtT35AY.580.002722
ORF1ab/nsp684V84VgtCgtA25AY.580.001815
ORF1ab/nsp684V84VgtCgtA55AY.90.000338
ORF1ab/nsp684V84FGtcTtc55B.1.1.1890.007564
ORF1ab/nsp684V84FGtcTtc55B.1.1.3880.227273
ORF1ab/nsp684V84FGtcTtc55B.1.1.4620.043103
ORF1ab/nsp684V84VgtCgtT55B.1.2430.000348
ORF1ab/nsp684V84VgtCgtT55B.1.2580.000333
ORF1ab/nsp684V84VgtCgtT45B.1.5960.000349
ORF1ab/nsp684V84VgtCgtA15B.1.5960.000087
ORF1ab/nsp684V84IGtcAtc55B.1.6370.000365
ORF1ab/nsp684V84VgtCgtT55C.370.00058
ORF1ab/nsp684V84VgtCgtT44AY.10.001583
ORF1ab/nsp684V84FGtcTtc44AY.1020.000106
ORF1ab/nsp684V84AgTcgCc44AY.250.000024
ORF1ab/nsp684V84VgtCgtT44AY.450.000487
ORF1ab/nsp684V84VgtCgtT44AY.50.000083
ORF1ab/nsp684V84VgtCgtA44AY.80.002424
ORF1ab/nsp684V84VgtCgtT44AY.900.002738
ORF1ab/nsp684V84FGtcTtc44AY.98.10.000194
ORF1ab/nsp684V84LGtcCtc44B.1.10.000073
ORF1ab/nsp684V84FGtcTtc44B.1.1.1610.014134
ORF1ab/nsp684V84FGtcTtc44B.1.1.2630.006231
ORF1ab/nsp684V84FGtcTtc44B.1.1.70.000004
ORF1ab/nsp684V84FGtcTtc44B.1.2430.000278
ORF1ab/nsp684V84VgtCgtT44B.1.4000.001716
ORF1ab/nsp684V84AgTcgCc44B.1.4710.010929
ORF1ab/nsp684V84VgtCgtT44P.1.140.000191
ORF1ab/nsp684V84VgtCgtT33AY.1000.000138
ORF1ab/nsp684V84VgtCgtT33AY.1090.002219
ORF1ab/nsp684V84VgtCgtT33AY.1170.000254
ORF1ab/nsp684V84IGtcAtc33AY.300.001187
ORF1ab/nsp684V84VgtCgtT23AY.39.10.000079
ORF1ab/nsp684V84VgtCgtA13AY.39.10.00004
ORF1ab/nsp684V84VgtCgtT33AY.4.2.10.000447
ORF1ab/nsp684V84IGtcAtc33AY.460.000312
ORF1ab/nsp684V84VgtCgtT33AY.480.001395
ORF1ab/nsp684V84VgtCgtT33AY.820.004071
ORF1ab/nsp684V84VgtCgtT23AY.870.001665
ORF1ab/nsp684V84VgtCgtA13AY.870.000833
ORF1ab/nsp684V84VgtCgtT33AY.980.000237
ORF1ab/nsp684V84FGtcTtc33B.1.1.1340.034091
ORF1ab/nsp684V84FGtcTtc33B.1.1.2160.002671
ORF1ab/nsp684V84VgtCgtT33B.1.1.3060.001315
ORF1ab/nsp684V84FGtcTtc33B.1.1.4320.003797
ORF1ab/nsp684V84FGtcTtc33B.1.1.5060.111111
ORF1ab/nsp684V84VgtCgtT33B.1.120.024
ORF1ab/nsp684V84VgtCgtT33B.1.2210.000213
ORF1ab/nsp684V84IGtcAtc33B.1.258.170.000312
ORF1ab/nsp684V84FGtcTtc33B.1.36.220.003623
ORF1ab/nsp684V84AgTcgCc33B.1.3690.000856
ORF1ab/nsp684V84FGtcTtc33B.1.4390.017751
ORF1ab/nsp684V84VgtCgtT33B.1.5090.002597
ORF1ab/nsp684V84VgtCgtT33B.1.5510.003871
ORF1ab/nsp684V84FGtcTtc33B.1.5960.000261
ORF1ab/nsp684V84AgTcgCc33B.1.617.20.000011
ORF1ab/nsp684V84VgtCgtT22A.2.5.10.009615
ORF1ab/nsp684V84DgTcgAc22All0
ORF1ab/nsp684V84LGtcCtc22AY.1030.000012
ORF1ab/nsp684V84IGtcAtc22AY.1030.000012
ORF1ab/nsp684V84VgtCgtT22AY.1060.00067
ORF1ab/nsp684V84AgTcgCc22AY.1210.000271
ORF1ab/nsp684V84VgtCgtT22AY.320.001065
ORF1ab/nsp684V84IGtcAtc22AY.390.000049
ORF1ab/nsp684V84delGTC---22AY.40.000003
ORF1ab/nsp684V84VgtCgtT22AY.4.40.000818
ORF1ab/nsp684V84VgtCgtT22AY.410.000588
ORF1ab/nsp684V84delGTC---22AY.430.000009
ORF1ab/nsp684V84IGtcAtc22AY.440.000012
ORF1ab/nsp684V84VgtCgtT22AY.490.00639
ORF1ab/nsp684V84FGtcTtc22AY.50.000041
ORF1ab/nsp684V84VgtCgtT22AY.840.000875
ORF1ab/nsp684V84VgtCgtT22AY.98.10.000097
ORF1ab/nsp684V84IGtcAtc22AY.98.10.000097
ORF1ab/nsp684V84VgtCgtT22AY.990.002099
ORF1ab/nsp684V84VgtCgtT22AY.99.20.000184
ORF1ab/nsp684V84VgtCgtT22B.1.1.1920.004619
ORF1ab/nsp684V84FGtcTtc22B.1.1.1980.002937
ORF1ab/nsp684V84FGtcTtc22B.1.1.280.000622
ORF1ab/nsp684V84VgtCgtT22B.1.1.2910.001485
ORF1ab/nsp684V84FGtcTtc22B.1.1.2910.001485
ORF1ab/nsp684V84VgtCgtT22B.1.1.3280.033898
ORF1ab/nsp684V84FGtcTtc22B.1.1.3350.025974
ORF1ab/nsp684V84VgtCgtT22B.1.1.3480.001592
ORF1ab/nsp684V84VgtCgtT22B.1.1.370.000386
ORF1ab/nsp684V84VgtCgtT22B.1.1.390.001019
ORF1ab/nsp684V84FGtcTtc22B.1.1.4090.005666
ORF1ab/nsp684V84VgtCgtT22B.1.1.4340.000697
ORF1ab/nsp684V84FGtcTtc22B.1.1.540.006042
ORF1ab/nsp684V84FGtcTtc22B.1.1170.025
ORF1ab/nsp684V84IGtcAtc22B.1.1600.000062
ORF1ab/nsp684V84VgtCgtT22B.1.177.20.009091
ORF1ab/nsp684V84VgtCgtT22B.1.177.310.022989
ORF1ab/nsp684V84VgtCgtT22B.1.1990.008264
ORF1ab/nsp684V84AgTcgCc22B.1.20.000018
ORF1ab/nsp684V84FGtcTtc22B.1.2210.000142
ORF1ab/nsp684V84VgtCgtT22B.1.2340.000264
ORF1ab/nsp684V84VgtCgtT22B.1.2400.000431
ORF1ab/nsp684V84VgtCgtT22B.1.360.000292
ORF1ab/nsp684V84FGtcTtc22B.1.36.100.009569
ORF1ab/nsp684V84FGtcTtc22B.1.3810.015625
ORF1ab/nsp684V84FGtcTtc22B.1.3960.001411
ORF1ab/nsp684V84IGtcAtc22B.1.4270.000101
ORF1ab/nsp684V84VgtCgtT22B.1.5110.068966
ORF1ab/nsp684V84IGtcAtc22B.1.5260.000047
ORF1ab/nsp684V84FGtcTtc22B.1.5270.007407
ORF1ab/nsp684V84AgTcgCc22B.1.5650.001621
ORF1ab/nsp684V84VgtCgtT22B.1.5750.000607
ORF1ab/nsp684V84VgtCgtT22B.1.5770.001375
ORF1ab/nsp684V84delGTC---22B.1.617.20.000008
ORF1ab/nsp684V84FGtcTtc22B.1.6230.001073
ORF1ab/nsp684V84IGtcAtc22B.400.000729
ORF1ab/nsp684V84AgTcgCc22P.10.000032
ORF1ab/nsp684V84IGtcAtc22P.10.000032
ORF1ab/nsp684V84VgtCgtT22P.1.170.000324
ORF1ab/nsp684V84VgtCgtT22P.50.027397
ORF1ab/nsp684V84VgtCgtT22Q.30.00029
ORF1ab/nsp684V84FGtcTtc11A.190.009434
ORF1ab/nsp684V84FGtcTtc11A.2.20.001689
ORF1ab/nsp684V84VgtCgtT11A.2.50.000499
ORF1ab/nsp684V84IGtcAtc11A.2.50.000499
ORF1ab/nsp684V84FGtcTtc11A.280.002646
ORF1ab/nsp684V84FGtcTtc11A.300.142857
ORF1ab/nsp684V84FGtcTtc11AE.40.043478
ORF1ab/nsp684V84AgTcgCc11AE.80.000489
ORF1ab/nsp684V84NGTcAAc11All0
ORF1ab/nsp684V84del1GTC-AA11All0
ORF1ab/nsp684V84VgtCgtT11AY.100.00053
ORF1ab/nsp684V84FGtcTtc11AY.100.00053
ORF1ab/nsp684V84AgTcgCc11AY.1020.000027
ORF1ab/nsp684V84FGtcTtc11AY.1030.000006
ORF1ab/nsp684V84VgtCgtT11AY.1050.000643
ORF1ab/nsp684V84VgtCgtA11AY.110.001339
ORF1ab/nsp684V84VgtCgtT11AY.1110.000183
ORF1ab/nsp684V84VgtCgtT11AY.1140.000231
ORF1ab/nsp684V84FGtcTtc11AY.1170.000085
ORF1ab/nsp684V84IGtcAtc11AY.1190.000035
ORF1ab/nsp684V84IGtcAtc11AY.1200.000037
ORF1ab/nsp684V84VgtCgtA11AY.120.20.001285
ORF1ab/nsp684V84VgtCgtT11AY.1210.000135
ORF1ab/nsp684V84VgtCgtT11AY.130.000161
ORF1ab/nsp684V84FGtcTtc11AY.160.00038
ORF1ab/nsp684V84VgtCgtT11AY.16.10.00047
ORF1ab/nsp684V84VgtCgtA11AY.170.008197
ORF1ab/nsp684V84IGtcAtc11AY.200.000039
ORF1ab/nsp684V84AgTcgCc11AY.23.10.000417
ORF1ab/nsp684V84FGtcTtc11AY.250.000006
ORF1ab/nsp684V84delGTC---11AY.250.000006
ORF1ab/nsp684V84VgtCgtT11AY.29.10.000221
ORF1ab/nsp684V84FGtcTtc11AY.30.00001
ORF1ab/nsp684V84VgtCgtT11AY.3.10.000085
ORF1ab/nsp684V84VgtCgtT11AY.330.000067
ORF1ab/nsp684V84FGtcTtc11AY.330.000067
ORF1ab/nsp684V84VgtCgtT11AY.39.1.10.000725
ORF1ab/nsp684V84VgtCgtT11AY.4.10.000737
ORF1ab/nsp684V84VgtCgtT11AY.4.20.000022
ORF1ab/nsp684V84delGTC---11AY.420.00004
ORF1ab/nsp684V84AgTcgCc11AY.440.000006
ORF1ab/nsp684V84FGtcTtc11AY.460.000104
ORF1ab/nsp684V84FGtcTtc11AY.46.10.001027
ORF1ab/nsp684V84VgtCgtT11AY.46.10.001027
ORF1ab/nsp684V84VgtCgtT11AY.46.40.000165
ORF1ab/nsp684V84FGtcTtc11AY.46.40.000165
ORF1ab/nsp684V84VgtCgtT11AY.46.60.000072
ORF1ab/nsp684V84IGtcAtc11AY.50.000021
ORF1ab/nsp684V84IGtcAtc11AY.5.40.000277
ORF1ab/nsp684V84IGtcAtc11AY.520.000814
ORF1ab/nsp684V84VgtCgtT11AY.530.000288
ORF1ab/nsp684V84IGtcAtc11AY.530.000288
ORF1ab/nsp684V84VgtCgtT11AY.60.000041
ORF1ab/nsp684V84VgtCgtT11AY.610.000105
ORF1ab/nsp684V84VgtCgtT11AY.630.000387
ORF1ab/nsp684V84VgtCgtT11AY.690.000187
ORF1ab/nsp684V84VgtCgtT11AY.70.000196
ORF1ab/nsp684V84VgtCgtT11AY.7.10.000113
ORF1ab/nsp684V84VgtCgtT11AY.700.000209
ORF1ab/nsp684V84del1GTC-AA11AY.710.000475
ORF1ab/nsp684V84AgTcgCc11AY.720.001361
ORF1ab/nsp684V84VgtCgtT11AY.740.000116
ORF1ab/nsp684V84FGtcTtc11AY.750.000056
ORF1ab/nsp684V84delGTC---11AY.750.000056
ORF1ab/nsp684V84FGtcTtc11AY.780.001541
ORF1ab/nsp684V84VgtCgtT11AY.790.001211
ORF1ab/nsp684V84FGtcTtc11AY.980.000079
ORF1ab/nsp684V84VgtCgtA11B0.000128
ORF1ab/nsp684V84delGTC---11B.10.000009
ORF1ab/nsp684V84AgTcgCc11B.10.000009
ORF1ab/nsp684V84NGTcAAc11B.1.10.000018
ORF1ab/nsp684V84AgTcgCc11B.1.10.000018
ORF1ab/nsp684V84IGtcAtc11B.1.10.000018
ORF1ab/nsp684V84FGtcTtc11B.1.1.1350.004695
ORF1ab/nsp684V84VgtCgtT11B.1.1.1380.006061
ORF1ab/nsp684V84AgTcgCc11B.1.1.1760.000439
ORF1ab/nsp684V84VgtCgtT11B.1.1.1760.000439
ORF1ab/nsp684V84FGtcTtc11B.1.1.1760.000439
ORF1ab/nsp684V84VgtCgtT11B.1.1.1890.001513
ORF1ab/nsp684V84FGtcTtc11B.1.1.1940.00495
ORF1ab/nsp684V84VgtCgtT11B.1.1.1960.005714
ORF1ab/nsp684V84FGtcTtc11B.1.1.2000.007463
ORF1ab/nsp684V84VgtCgtT11B.1.1.2100.005714
ORF1ab/nsp684V84IGtcAtc11B.1.1.2140.000055
ORF1ab/nsp684V84VgtCgtT11B.1.1.2140.000055
ORF1ab/nsp684V84delGTC---11B.1.1.2140.000055
ORF1ab/nsp684V84VgtCgtT11B.1.1.2170.003636
ORF1ab/nsp684V84VgtCgtT11B.1.1.250.000569
ORF1ab/nsp684V84FGtcTtc11B.1.1.2820.011628
ORF1ab/nsp684V84VgtCgtT11B.1.1.2840.000107
ORF1ab/nsp684V84VgtCgtT11B.1.1.2940.001266
ORF1ab/nsp684V84VgtCgtT11B.1.1.3030.002762
ORF1ab/nsp684V84IGtcAtc11B.1.1.3180.000302
ORF1ab/nsp684V84IGtcAtc11B.1.1.330.000421
ORF1ab/nsp684V84FGtcTtc11B.1.1.330.000421
ORF1ab/nsp684V84VgtCgtT11B.1.1.3350.012987
ORF1ab/nsp684V84FGtcTtc11B.1.1.340.013158
ORF1ab/nsp684V84FGtcTtc11B.1.1.3480.000796
ORF1ab/nsp684V84FGtcTtc11B.1.1.3630.005988
ORF1ab/nsp684V84VgtCgtT11B.1.1.3690.000446
ORF1ab/nsp684V84FGtcTtc11B.1.1.370.000193
ORF1ab/nsp684V84FGtcTtc11B.1.1.3720.000689
ORF1ab/nsp684V84FGtcTtc11B.1.1.390.00051
ORF1ab/nsp684V84FGtcTtc11B.1.1.3970.002252
ORF1ab/nsp684V84FGtcTtc11B.1.1.3980.003226
ORF1ab/nsp684V84VgtCgtT11B.1.1.4200.001006
ORF1ab/nsp684V84FGtcTtc11B.1.1.4370.010417
ORF1ab/nsp684V84FGtcTtc11B.1.1.440.00241
ORF1ab/nsp684V84VgtCgtT11B.1.1.4480.002033
ORF1ab/nsp684V84VgtCgtT11B.1.1.4640.001473
ORF1ab/nsp684V84FGtcTtc11B.1.1.4860.001577
ORF1ab/nsp684V84VgtCgtT11B.1.1.510.001718
ORF1ab/nsp684V84VgtCgtT11B.1.1.5260.003546
ORF1ab/nsp684V84FGtcTtc11B.1.1.560.017857
ORF1ab/nsp684V84FGtcTtc11B.1.1.630.000386
ORF1ab/nsp684V84VgtCgtT11B.1.1.630.000386
ORF1ab/nsp684V84IGtcAtc11B.1.1.630.000386
ORF1ab/nsp684V84LGtcCtc11B.1.1.70.000001
ORF1ab/nsp684V84VgtCgtT11B.1.1.700.000341
ORF1ab/nsp684V84FGtcTtc11B.1.1.990.02381
ORF1ab/nsp684V84VgtCgtT11B.1.1100.004525
ORF1ab/nsp684V84FGtcTtc11B.1.1130.015625
ORF1ab/nsp684V84FGtcTtc11B.1.1280.000635
ORF1ab/nsp684V84LGtcCtc11B.1.160.70.002079
ORF1ab/nsp684V84VgtCgtT11B.1.177.100.000878
ORF1ab/nsp684V84AgTcgCc11B.1.177.150.000631
ORF1ab/nsp684V84VgtCgtT11B.1.177.210.000076
ORF1ab/nsp684V84FGtcTtc11B.1.177.350.000691
ORF1ab/nsp684V84delGTC---11B.1.177.40.000211
ORF1ab/nsp684V84VgtCgtT11B.1.177.50.001242
ORF1ab/nsp684V84VgtCgtT11B.1.177.600.000218
ORF1ab/nsp684V84VgtCgtT11B.1.177.620.001192
ORF1ab/nsp684V84FGtcTtc11B.1.177.650.000665
ORF1ab/nsp684V84FGtcTtc11B.1.177.730.000566
ORF1ab/nsp684V84VgtCgtT11B.1.177.750.001041
ORF1ab/nsp684V84delGTC---11B.1.177.760.002494
ORF1ab/nsp684V84VgtCgtT11B.1.177.810.000189
ORF1ab/nsp684V84IGtcAtc11B.1.177.810.000189
ORF1ab/nsp684V84FGtcTtc11B.1.177.810.000189
ORF1ab/nsp684V84VgtCgtT11B.1.177.860.000183
ORF1ab/nsp684V84DgTcgAc11B.1.20.000009
ORF1ab/nsp684V84IGtcAtc11B.1.2060.000816
ORF1ab/nsp684V84FGtcTtc11B.1.2100.002132
ORF1ab/nsp684V84FGtcTtc11B.1.2140.003663
ORF1ab/nsp684V84VgtCgtT11B.1.2240.025
ORF1ab/nsp684V84FGtcTtc11B.1.2290.009709
ORF1ab/nsp684V84VgtCgtT11B.1.2320.000537
ORF1ab/nsp684V84FGtcTtc11B.1.2340.000132
ORF1ab/nsp684V84IGtcAtc11B.1.2390.001221
ORF1ab/nsp684V84VgtCgtT11B.1.2390.001221
ORF1ab/nsp684V84FGtcTtc11B.1.2470.014925
ORF1ab/nsp684V84VgtCgtT11B.1.258.170.000104
ORF1ab/nsp684V84FGtcTtc11B.1.3110.000275
ORF1ab/nsp684V84FGtcTtc11B.1.3290.000608
ORF1ab/nsp684V84FGtcTtc11B.1.3360.002439
ORF1ab/nsp684V84FGtcTtc11B.1.3500.002933
ORF1ab/nsp684V84DgTcgAc11B.1.3510.00003
ORF1ab/nsp684V84FGtcTtc11B.1.3510.00003
ORF1ab/nsp684V84VgtCgtT11B.1.36.180.00042
ORF1ab/nsp684V84VgtCgtT11B.1.36.290.000517
ORF1ab/nsp684V84VgtCgtT11B.1.36.80.001
ORF1ab/nsp684V84FGtcTtc11B.1.3660.004878
ORF1ab/nsp684V84FGtcTtc11B.1.3870.04
ORF1ab/nsp684V84FGtcTtc11B.1.3890.001002
ORF1ab/nsp684V84VgtCgtT11B.1.3970.004854
ORF1ab/nsp684V84FGtcTtc11B.1.4000.000429
ORF1ab/nsp684V84FGtcTtc11B.1.4040.001302
ORF1ab/nsp684V84VgtCgtT11B.1.4090.000781
ORF1ab/nsp684V84FGtcTtc11B.1.4260.001009
ORF1ab/nsp684V84IGtcAtc11B.1.4280.00102
ORF1ab/nsp684V84AgTcgCc11B.1.4290.000024
ORF1ab/nsp684V84IGtcAtc11B.1.4360.001029
ORF1ab/nsp684V84FGtcTtc11B.1.4380.006536
ORF1ab/nsp684V84FGtcTtc11B.1.438.10.000107
ORF1ab/nsp684V84VgtCgtT11B.1.4560.003268
ORF1ab/nsp684V84VgtCgtT11B.1.4710.002732
ORF1ab/nsp684V84FGtcTtc11B.1.4850.014925
ORF1ab/nsp684V84FGtcTtc11B.1.5050.004386
ORF1ab/nsp684V84VgtCgtT11B.1.5200.021739
ORF1ab/nsp684V84AgTcgCc11B.1.5260.000024
ORF1ab/nsp684V84VgtCgtT11B.1.5330.009615
ORF1ab/nsp684V84AgTcgCc11B.1.5600.00463
ORF1ab/nsp684V84VgtCgtT11B.1.5660.019231
ORF1ab/nsp684V84VgtCgtT11B.1.5670.003333
ORF1ab/nsp684V84FGtcTtc11B.1.5820.000491
ORF1ab/nsp684V84VgtCgtT11B.1.5900.004545
ORF1ab/nsp684V84FGtcTtc11B.1.5950.000261
ORF1ab/nsp684V84VgtCgtA11B.1.5990.00365
ORF1ab/nsp684V84VgtCgtA11B.1.6230.000536
ORF1ab/nsp684V84VgtCgtT11B.1.6370.000073
ORF1ab/nsp684V84FGtcTtc11B.1.780.008547
ORF1ab/nsp684V84AgTcgCc11B.400.000364
ORF1ab/nsp684V84AgTcgCc11D.20.000075
ORF1ab/nsp684V84VgtCgtT11D.20.000075
ORF1ab/nsp684V84IGtcAtc11D.20.000075
ORF1ab/nsp684V84delGTC---11N.40.004255
ORF1ab/nsp684V84FGtCTtT11N.80.03125
ORF1ab/nsp684V84VgtCgtT11N.90.005952
ORF1ab/nsp684V84delGTC---11P.1.150.000232
ORF1ab/nsp684V84IGtcAtc11P.1.70.000319
ORF1ab/nsp684V84VgtCgtT11P.30.001595
ORF1ab/nsp684V84delGTC---11Q.80.000165
ORF1ab/nsp684V84IGtcAtc11Q.80.000165
ORF1ab/nsp684V84FGtcTtc11R.10.00009
ORF1ab/nsp684V84VgtCgtT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.