CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 82

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp682N82SN3651SnonsynaAtaGt8208190.9987811216-11218
ORF1ab/nsp682N82SN3651SnonsynAAtTCt82010.0012195111216-11218
ORF1ab/nsp682N82NN3651NsynaaTaaC333333111216-11218
ORF1ab/nsp682N82DN3651DnonsynAatGat2323111216-11218
ORF1ab/nsp682N82delN3651deldelAAT---2020111216-11218
ORF1ab/nsp682N82YN3651YnonsynAatTat66111216-11218
ORF1ab/nsp682N82IN3651InonsynaAtaTt66111216-11218
ORF1ab/nsp682N82FN3651FnonsynAAtTTt33111216-11218
ORF1ab/nsp682N82TN3651TnonsynaAtaCt33111216-11218
ORF1ab/nsp682N82KN3651KnonsynaaTaaA33111216-11218
ORF1ab/nsp682N82del1N3651del1delAat-at22111216-11218
ORF1ab/nsp682N82XN3651XnonsynAaTTaG11111216-11218

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp682N82SaAtaGt819820All0.000157
ORF1ab/nsp682N82SAAtTCt1820All0
ORF1ab/nsp682N82SaAtaGt597597A.270.988411
ORF1ab/nsp682N82NaaTaaC333333All0.000064
ORF1ab/nsp682N82SaAtaGt128128B.1.415.10.969697
ORF1ab/nsp682N82NaaTaaC5353B.1.1.70.000047
ORF1ab/nsp682N82NaaTaaC5252B.1.617.20.000196
ORF1ab/nsp682N82NaaTaaC4343B.1.20.000379
ORF1ab/nsp682N82NaaTaaC3838AY.250.000229
ORF1ab/nsp682N82NaaTaaC2626AY.40.00004
ORF1ab/nsp682N82SaAtaGt2424B.1.10.000435
ORF1ab/nsp682N82DAatGat2323All0.000004
ORF1ab/nsp682N82SaAtaGt2020A0.00774
ORF1ab/nsp682N82delAAT---2020All0.000004
ORF1ab/nsp682N82NaaTaaC1919AY.430.000084
ORF1ab/nsp682N82NaaTaaC1919AY.440.000116
ORF1ab/nsp682N82SaAtaGt1515B.10.000137
ORF1ab/nsp682N82SaAtaGt88B0.001022
ORF1ab/nsp682N82YAatTat66All0.000001
ORF1ab/nsp682N82IaAtaTt66All0.000001
ORF1ab/nsp682N82DAatGat66AY.1180.000376
ORF1ab/nsp682N82NaaTaaC66AY.330.000401
ORF1ab/nsp682N82NaaTaaC55B.1.1.250.002843
ORF1ab/nsp682N82delAAT---55B.1.1.70.000004
ORF1ab/nsp682N82DAatGat55B.1.1.70.000004
ORF1ab/nsp682N82SaAtaGt55B.1.2430.000348
ORF1ab/nsp682N82NaaTaaC55R.10.00045
ORF1ab/nsp682N82IaAtaTt440.222222
ORF1ab/nsp682N82NaaTaaC44AY.390.000099
ORF1ab/nsp682N82NaaTaaC44B.10.000037
ORF1ab/nsp682N82NaaTaaC44B.1.10.000073
ORF1ab/nsp682N82YAatTat330.166667
ORF1ab/nsp682N82SaAtaGt33A.290.015957
ORF1ab/nsp682N82KaaTaaA33All0.000001
ORF1ab/nsp682N82FAAtTTt33All0.000001
ORF1ab/nsp682N82TaAtaCt33All0.000001
ORF1ab/nsp682N82NaaTaaC33AY.1030.000019
ORF1ab/nsp682N82SaAtaGt33B.1.1.70.000003
ORF1ab/nsp682N82NaaTaaC33P.10.000047
ORF1ab/nsp682N82FAAtTTt220.111111
ORF1ab/nsp682N82del1Aat-at22All0
ORF1ab/nsp682N82DAatGat22AY.1000.000092
ORF1ab/nsp682N82NaaTaaC22AY.1020.000053
ORF1ab/nsp682N82NaaTaaC22AY.1200.000074
ORF1ab/nsp682N82NaaTaaC22AY.260.000057
ORF1ab/nsp682N82NaaTaaC22AY.300.000791
ORF1ab/nsp682N82NaaTaaC22AY.450.000243
ORF1ab/nsp682N82NaaTaaC22AY.610.00021
ORF1ab/nsp682N82NaaTaaC22AY.99.20.000184
ORF1ab/nsp682N82SaAtaGt22B.1.1.1610.007067
ORF1ab/nsp682N82NaaTaaC22B.1.1280.001271
ORF1ab/nsp682N82DAatGat22B.1.2210.000142
ORF1ab/nsp682N82TaAtaCt22B.1.2580.000133
ORF1ab/nsp682N82NaaTaaC22B.1.4290.000047
ORF1ab/nsp682N82SaAtaGt22B.1.5760.001813
ORF1ab/nsp682N82delAAT---22B.1.617.20.000008
ORF1ab/nsp682N82DAatGat22N.50.003534
ORF1ab/nsp682N82NaaTaaC22P.1.140.000096
ORF1ab/nsp682N82TaAtaCt110.055556
ORF1ab/nsp682N82SAAtTCt110.055556
ORF1ab/nsp682N82SaAtaGt11A.10.000282
ORF1ab/nsp682N82SaAtaGt11A.20.000662
ORF1ab/nsp682N82XAaTTaG11All0
ORF1ab/nsp682N82NaaTaaC11AY.1010.00049
ORF1ab/nsp682N82NaaTaaC11AY.1050.000643
ORF1ab/nsp682N82NaaTaaC11AY.1170.000085
ORF1ab/nsp682N82delAAT---11AY.250.000006
ORF1ab/nsp682N82XAaTTaG11AY.30.00001
ORF1ab/nsp682N82DAatGat11AY.30.00001
ORF1ab/nsp682N82SaAtaGt11AY.30.00001
ORF1ab/nsp682N82YAatTat11AY.40.000002
ORF1ab/nsp682N82DAatGat11AY.40.000002
ORF1ab/nsp682N82delAAT---11AY.40.000002
ORF1ab/nsp682N82NaaTaaC11AY.4.20.000022
ORF1ab/nsp682N82YAatTat11AY.4.20.000022
ORF1ab/nsp682N82delAAT---11AY.420.00004
ORF1ab/nsp682N82NaaTaaC11AY.420.00004
ORF1ab/nsp682N82delAAT---11AY.430.000004
ORF1ab/nsp682N82DAatGat11AY.430.000004
ORF1ab/nsp682N82NaaTaaC11AY.460.000104
ORF1ab/nsp682N82DAatGat11AY.46.60.000072
ORF1ab/nsp682N82NaaTaaC11AY.50.000021
ORF1ab/nsp682N82NaaTaaC11AY.650.000533
ORF1ab/nsp682N82NaaTaaC11AY.710.000475
ORF1ab/nsp682N82delAAT---11AY.710.000475
ORF1ab/nsp682N82delAAT---11AY.750.000056
ORF1ab/nsp682N82NaaTaaC11AY.750.000056
ORF1ab/nsp682N82NaaTaaC11AY.9.20.000037
ORF1ab/nsp682N82NaaTaaC11AY.990.001049
ORF1ab/nsp682N82delAAT---11B.10.000009
ORF1ab/nsp682N82NaaTaaC11B.1.1.1410.002012
ORF1ab/nsp682N82delAAT---11B.1.1.2140.000055
ORF1ab/nsp682N82NaaTaaC11B.1.1.2140.000055
ORF1ab/nsp682N82NaaTaaC11B.1.1.2210.010101
ORF1ab/nsp682N82SaAtaGt11B.1.1.280.000311
ORF1ab/nsp682N82NaaTaaC11B.1.1.3060.000438
ORF1ab/nsp682N82SaAtaGt11B.1.1.3070.002532
ORF1ab/nsp682N82SaAtaGt11B.1.1.330.000421
ORF1ab/nsp682N82SaAtaGt11B.1.1.4090.002833
ORF1ab/nsp682N82NaaTaaC11B.1.1.4320.001266
ORF1ab/nsp682N82NaaTaaC11B.1.1.5190.00004
ORF1ab/nsp682N82del1Aat-at11B.1.1.70.000001
ORF1ab/nsp682N82KaaTaaA11B.1.1.70.000001
ORF1ab/nsp682N82IaAtaTt11B.1.1.70.000001
ORF1ab/nsp682N82NaaTaaC11B.1.1.700.000341
ORF1ab/nsp682N82NaaTaaC11B.1.1600.000031
ORF1ab/nsp682N82SaAtaGt11B.1.160.330.004425
ORF1ab/nsp682N82NaaTaaC11B.1.1770.000013
ORF1ab/nsp682N82KaaTaaA11B.1.1770.000013
ORF1ab/nsp682N82delAAT---11B.1.177.40.000211
ORF1ab/nsp682N82NaaTaaC11B.1.177.730.000566
ORF1ab/nsp682N82SaAtaGt11B.1.177.730.000566
ORF1ab/nsp682N82delAAT---11B.1.177.760.002494
ORF1ab/nsp682N82del1Aat-at11B.1.2060.000816
ORF1ab/nsp682N82NaaTaaC11B.1.36.290.000517
ORF1ab/nsp682N82NaaTaaC11B.1.5250.000113
ORF1ab/nsp682N82IaAtaTt11B.1.5760.000907
ORF1ab/nsp682N82FAAtTTt11B.1.5760.000907
ORF1ab/nsp682N82YAatTat11B.1.5760.000907
ORF1ab/nsp682N82KaaTaaA11B.1.617.20.000004
ORF1ab/nsp682N82DAatGat11B.1.617.20.000004
ORF1ab/nsp682N82NaaTaaC11B.1.6210.000089
ORF1ab/nsp682N82SaAtaGt11B.1.6230.000536
ORF1ab/nsp682N82SaAtaGt11B.550.00295
ORF1ab/nsp682N82NaaTaaC11C.360.000911
ORF1ab/nsp682N82NaaTaaC11C.370.000116
ORF1ab/nsp682N82SaAtaGt11C.60.037037
ORF1ab/nsp682N82NaaTaaC11D.20.000075
ORF1ab/nsp682N82delAAT---11N.40.004255
ORF1ab/nsp682N82DAatGat11P.1.140.000048
ORF1ab/nsp682N82delAAT---11P.1.150.000232
ORF1ab/nsp682N82delAAT---11Q.80.000165
ORF1ab/nsp682N82NaaTaaC11W.30.005263