CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 76

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp676A76AA3645AsyngcCgcT677366930.98818811198-11200
ORF1ab/nsp676A76AA3645AsyngcCgcA6773750.011073411198-11200
ORF1ab/nsp676A76AA3645AsyngcCgcG677350.00073822511198-11200
ORF1ab/nsp676A76VA3645VnonsyngCcgTc217621720.99816211198-11200
ORF1ab/nsp676A76VA3645VnonsyngCCgTT217640.0018382411198-11200
ORF1ab/nsp676A76TA3645TnonsynGccAcc166116590.99879611198-11200
ORF1ab/nsp676A76TA3645TnonsynGcCAcT166120.0012040911198-11200
ORF1ab/nsp676A76SA3645SnonsynGccTcc36340.94444411198-11200
ORF1ab/nsp676A76SA3645SnonsynGcCTcT3620.055555611198-11200
ORF1ab/nsp676A76delA3645deldelGCC---2727111198-11200
ORF1ab/nsp676A76GA3645GnonsyngCcgGc630.511198-11200
ORF1ab/nsp676A76GA3645GnonsyngCCgGA620.33333311198-11200
ORF1ab/nsp676A76GA3645GnonsyngCCgGT610.16666711198-11200
ORF1ab/nsp676A76PA3645PnonsynGccCcc44111198-11200
ORF1ab/nsp676A76FA3645FnonsynGCcTTc320.66666711198-11200
ORF1ab/nsp676A76FA3645FnonsynGCCTTT310.33333311198-11200
ORF1ab/nsp676A76DA3645DnonsyngCcgAc22111198-11200
ORF1ab/nsp676A76del1A3645del1delGCC-AT210.511198-11200
ORF1ab/nsp676A76del1A3645del1delgcCgc-210.511198-11200
ORF1ab/nsp676A76CA3645CnonsynGCCTGT210.511198-11200
ORF1ab/nsp676A76CA3645CnonsynGCcTGc210.511198-11200

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp676A76AgcCgcT66936773All0.00128
ORF1ab/nsp676A76AgcCgcA756773All0.000014
ORF1ab/nsp676A76AgcCgcG56773All0.000001
ORF1ab/nsp676A76VgCcgTc21722176All0.000415
ORF1ab/nsp676A76VgCCgTT42176All0.000001
ORF1ab/nsp676A76TGccAcc16591661All0.000317
ORF1ab/nsp676A76TGcCAcT21661All0
ORF1ab/nsp676A76TGccAcc13541354AY.40.002107
ORF1ab/nsp676A76AgcCgcT9971002B.1.1.70.000893
ORF1ab/nsp676A76AgcCgcA31002B.1.1.70.000003
ORF1ab/nsp676A76AgcCgcG21002B.1.1.70.000002
ORF1ab/nsp676A76AgcCgcT727750AY.40.001132
ORF1ab/nsp676A76AgcCgcA22750AY.40.000034
ORF1ab/nsp676A76AgcCgcG1750AY.40.000002
ORF1ab/nsp676A76AgcCgcT701701AY.290.011057
ORF1ab/nsp676A76VgCcgTc573573AY.840.250656
ORF1ab/nsp676A76AgcCgcT553557B.10.005065
ORF1ab/nsp676A76AgcCgcA3557B.10.000027
ORF1ab/nsp676A76AgcCgcG1557B.10.000009
ORF1ab/nsp676A76AgcCgcT530542AY.1030.003291
ORF1ab/nsp676A76AgcCgcA12542AY.1030.000075
ORF1ab/nsp676A76AgcCgcT354354B.1.177.210.02707
ORF1ab/nsp676A76VgCcgTc301303AY.40.000468
ORF1ab/nsp676A76VgCCgTT2303AY.40.000003
ORF1ab/nsp676A76AgcCgcT265265B.1.177.830.392593
ORF1ab/nsp676A76AgcCgcT246246AY.30.002447
ORF1ab/nsp676A76AgcCgcT207210B.1.617.20.000779
ORF1ab/nsp676A76AgcCgcA3210B.1.617.20.000011
ORF1ab/nsp676A76VgCcgTc205205B.1.1.70.000184
ORF1ab/nsp676A76AgcCgcT187189AY.430.000828
ORF1ab/nsp676A76AgcCgcA2189AY.430.000009
ORF1ab/nsp676A76VgCcgTc161161AY.430.000713
ORF1ab/nsp676A76VgCcgTc150150B.1.617.20.000565
ORF1ab/nsp676A76AgcCgcT128135B.1.20.001127
ORF1ab/nsp676A76AgcCgcA7135B.1.20.000062
ORF1ab/nsp676A76AgcCgcT131131B.1.4290.003082
ORF1ab/nsp676A76VgCcgTc120120AY.440.00073
ORF1ab/nsp676A76AgcCgcT93103AY.50.00192
ORF1ab/nsp676A76AgcCgcA10103AY.50.000206
ORF1ab/nsp676A76AgcCgcT9191B.1.1770.001198
ORF1ab/nsp676A76AgcCgcT8484AY.440.000511
ORF1ab/nsp676A76AgcCgcT8282AY.1020.002174
ORF1ab/nsp676A76AgcCgcT7979AY.60.003249
ORF1ab/nsp676A76TGccAcc6868B.1.617.20.000256
ORF1ab/nsp676A76AgcCgcT6363B.1.351.20.019062
ORF1ab/nsp676A76AgcCgcT6262P.10.000977
ORF1ab/nsp676A76VgCcgTc5858AY.250.000349
ORF1ab/nsp676A76TGccAcc5454AY.470.00168
ORF1ab/nsp676A76AgcCgcT5151AY.390.00126
ORF1ab/nsp676A76AgcCgcT4444AY.46.40.007238
ORF1ab/nsp676A76AgcCgcT4343AY.1130.006123
ORF1ab/nsp676A76AgcCgcT4343AY.250.000259
ORF1ab/nsp676A76AgcCgcT4343B.1.3770.196347
ORF1ab/nsp676A76VgCcgTc4242B.1.5960.00366
ORF1ab/nsp676A76SGccTcc3436All0.000007
ORF1ab/nsp676A76SGcCTcT236All0
ORF1ab/nsp676A76AgcCgcT3535B.1.258.170.003639
ORF1ab/nsp676A76TGccAcc3434AY.930.009285
ORF1ab/nsp676A76AgcCgcT3434B.1.2580.002263
ORF1ab/nsp676A76AgcCgcT3232B.1.10.000581
ORF1ab/nsp676A76AgcCgcT3030B.1.3490.021444
ORF1ab/nsp676A76delGCC---2727All0.000005
ORF1ab/nsp676A76VgCcgTc2626AY.99.20.002396
ORF1ab/nsp676A76TGccAcc2525AY.1000.00115
ORF1ab/nsp676A76TGccAcc2525B.1.1.70.000022
ORF1ab/nsp676A76VgCcgTc2323AY.200.000894
ORF1ab/nsp676A76TGccAcc2323AY.29.10.005072
ORF1ab/nsp676A76VgCcgTc2223AY.50.000454
ORF1ab/nsp676A76VgCCgTT123AY.50.000021
ORF1ab/nsp676A76VgCcgTc2323B.1.1.4320.029114
ORF1ab/nsp676A76AgcCgcT2222B.1.177.730.012458
ORF1ab/nsp676A76AgcCgcT2222B.1.5260.000517
ORF1ab/nsp676A76AgcCgcT2020AY.1090.014793
ORF1ab/nsp676A76AgcCgcT2020B.60.018198
ORF1ab/nsp676A76AgcCgcT1919AY.1070.008854
ORF1ab/nsp676A76VgCcgTc1919AY.390.00047
ORF1ab/nsp676A76VgCcgTc1818AY.1030.000112
ORF1ab/nsp676A76VgCcgTc1818AY.30.000179
ORF1ab/nsp676A76AgcCgcT1717AY.750.000952
ORF1ab/nsp676A76AgcCgcT1717B.1.1.2160.015138
ORF1ab/nsp676A76AgcCgcT1717B.1.1.4340.005925
ORF1ab/nsp676A76VgCcgTc1515AY.460.001561
ORF1ab/nsp676A76AgcCgcT1515AY.9.20.000551
ORF1ab/nsp676A76VgCcgTc1515B.1.20.000132
ORF1ab/nsp676A76AgcCgcT1515B.1.4910.789474
ORF1ab/nsp676A76VgCcgTc1414AY.120.10.004494
ORF1ab/nsp676A76VgCcgTc1414AY.420.000563
ORF1ab/nsp676A76AgcCgcT1414AY.46.20.008895
ORF1ab/nsp676A76VgCcgTc1414AY.46.60.001011
ORF1ab/nsp676A76VgCcgTc1414AY.730.009315
ORF1ab/nsp676A76AgcCgcT1414B.1.1600.000437
ORF1ab/nsp676A76AgcCgcT1313B.1.1.5190.000516
ORF1ab/nsp676A76AgcCgcT1313B.1.6210.001151
ORF1ab/nsp676A76VgCcgTc1313P.10.000205
ORF1ab/nsp676A76AgcCgcT1313P.20.002426
ORF1ab/nsp676A76AgcCgcT1212AY.1170.001014
ORF1ab/nsp676A76AgcCgcT1212AY.200.000466
ORF1ab/nsp676A76AgcCgcT1212B.1.3510.000357
ORF1ab/nsp676A76VgCcgTc1111AY.1020.000292
ORF1ab/nsp676A76AgcCgcT1111AY.1200.000409
ORF1ab/nsp676A76TGccAcc1111AY.250.000066
ORF1ab/nsp676A76AgcCgcT1111AY.450.001339
ORF1ab/nsp676A76VgCcgTc1111AY.60.000452
ORF1ab/nsp676A76VgCcgTc1111B.1.5250.001245
ORF1ab/nsp676A76AgcCgcT1111B.1.617.10.001419
ORF1ab/nsp676A76VgCcgTc1111N.50.019435
ORF1ab/nsp676A76TGccAcc1010AY.430.000044
ORF1ab/nsp676A76AgcCgcT1010B.1.177.320.013495
ORF1ab/nsp676A76VgCcgTc1010B.1.2340.001319
ORF1ab/nsp676A76AgcCgcT1010B.1.2410.008117
ORF1ab/nsp676A76AgcCgcT1010B.1.4270.000505
ORF1ab/nsp676A76AgcCgcT910Q.80.001484
ORF1ab/nsp676A76AgcCgcG110Q.80.000165
ORF1ab/nsp676A76VgCcgTc99AY.1000.000414
ORF1ab/nsp676A76VgCcgTc99AY.1200.000335
ORF1ab/nsp676A76AgcCgcT99AY.3.10.000767
ORF1ab/nsp676A76VgCcgTc99AY.4.40.003682
ORF1ab/nsp676A76VgCcgTc99AY.5.40.00249
ORF1ab/nsp676A76AgcCgcT99B.1.3110.002471
ORF1ab/nsp676A76VgCcgTc99B.1.617.10.001161
ORF1ab/nsp676A76AgcCgcT88AY.230.000558
ORF1ab/nsp676A76AgcCgcT88AY.260.000226
ORF1ab/nsp676A76TGccAcc88AY.30.00008
ORF1ab/nsp676A76AgcCgcT88AY.360.001186
ORF1ab/nsp676A76VgCcgTc88AY.4.20.000174
ORF1ab/nsp676A76AgcCgcT88AY.4.20.000174
ORF1ab/nsp676A76AgcCgcT88AY.420.000322
ORF1ab/nsp676A76AgcCgcT58B.1.1.2140.000277
ORF1ab/nsp676A76AgcCgcA38B.1.1.2140.000166
ORF1ab/nsp676A76VgCcgTc88B.1.2100.017058
ORF1ab/nsp676A76AgcCgcT88B.1.3360.019512
ORF1ab/nsp676A76AgcCgcT88B.1.5960.000697
ORF1ab/nsp676A76AgcCgcT77AY.1000.000322
ORF1ab/nsp676A76VgCcgTc77AY.120.002212
ORF1ab/nsp676A76AgcCgcT77AY.1210.000947
ORF1ab/nsp676A76SGccTcc77AY.420.000282
ORF1ab/nsp676A76AgcCgcT77AY.470.000218
ORF1ab/nsp676A76VgCcgTc77AY.470.000218
ORF1ab/nsp676A76VgCcgTc77AY.850.00299
ORF1ab/nsp676A76AgcCgcT77AY.980.000553
ORF1ab/nsp676A76AgcCgcT77B.1.177.400.036082
ORF1ab/nsp676A76VgCcgTc77B.1.177.430.01034
ORF1ab/nsp676A76GgCcgGc36All0.000001
ORF1ab/nsp676A76GgCCgGA26All0
ORF1ab/nsp676A76GgCCgGT16All0
ORF1ab/nsp676A76TGccAcc66AY.1030.000037
ORF1ab/nsp676A76AgcCgcT66AY.1180.000376
ORF1ab/nsp676A76AgcCgcT66AY.1190.000212
ORF1ab/nsp676A76VgCcgTc66AY.290.000095
ORF1ab/nsp676A76AgcCgcT66AY.29.10.001323
ORF1ab/nsp676A76AgcCgcT66AY.39.10.000238
ORF1ab/nsp676A76AgcCgcT66AY.840.002625
ORF1ab/nsp676A76AgcCgcT66AY.90.000406
ORF1ab/nsp676A76AgcCgcT66AY.99.20.000553
ORF1ab/nsp676A76delGCC---66B.1.1.70.000005
ORF1ab/nsp676A76AgcCgcT66B.1.214.30.042857
ORF1ab/nsp676A76AgcCgcT66B.1.2210.000426
ORF1ab/nsp676A76AgcCgcT66B.1.2390.007326
ORF1ab/nsp676A76AgcCgcT66B.1.2430.000418
ORF1ab/nsp676A76VgCcgTc66B.1.3510.000178
ORF1ab/nsp676A76VgCcgTc55AY.1060.001674
ORF1ab/nsp676A76VgCcgTc55AY.330.000334
ORF1ab/nsp676A76VgCcgTc55AY.360.000741
ORF1ab/nsp676A76VgCcgTc55AY.4.50.000537
ORF1ab/nsp676A76AgcCgcT55B.1.2100.010661
ORF1ab/nsp676A76TGccAcc240.111111
ORF1ab/nsp676A76TGcCAcT240.111111
ORF1ab/nsp676A76PGccCcc44All0.000001
ORF1ab/nsp676A76AgcCgcT44AY.34.10.00204
ORF1ab/nsp676A76VgCcgTc44AY.910.002922
ORF1ab/nsp676A76VgCcgTc44AY.920.001149
ORF1ab/nsp676A76AgcCgcT44AY.920.001149
ORF1ab/nsp676A76SGccTcc44B.10.000037
ORF1ab/nsp676A76AgcCgcT44B.1.1.2840.00043
ORF1ab/nsp676A76AgcCgcT44B.1.1.630.001543
ORF1ab/nsp676A76SGccTcc44B.1.1.70.000004
ORF1ab/nsp676A76VgCcgTc44B.1.1600.000125
ORF1ab/nsp676A76TGccAcc44B.1.177.860.000734
ORF1ab/nsp676A76VgCcgTc44B.1.258.90.02
ORF1ab/nsp676A76AgcCgcT44B.1.360.000584
ORF1ab/nsp676A76SGccTcc44B.1.4270.000202
ORF1ab/nsp676A76AgcCgcT44B.1.4330.01278
ORF1ab/nsp676A76AgcCgcT44B.1.438.10.000429
ORF1ab/nsp676A76VgCcgTc44B.1.5260.000094
ORF1ab/nsp676A76AgcCgcT44B.1.6020.026144
ORF1ab/nsp676A76VgCcgTc44B.1.6370.000292
ORF1ab/nsp676A76AgcCgcT44C.360.003643
ORF1ab/nsp676A76AgcCgcT44P.1.140.000191
ORF1ab/nsp676A76AgcCgcT44P.1.150.000929
ORF1ab/nsp676A76VgCcgTc44P.1.160.001496
ORF1ab/nsp676A76AgcCgcT330.166667
ORF1ab/nsp676A76SGccTcc230.111111
ORF1ab/nsp676A76FGCcTTc230.111111
ORF1ab/nsp676A76VgCcgTc230.111111
ORF1ab/nsp676A76FGCCTTT130.055556
ORF1ab/nsp676A76VgCCgTT130.055556
ORF1ab/nsp676A76SGcCTcT130.055556
ORF1ab/nsp676A76FGCcTTc23All0
ORF1ab/nsp676A76FGCCTTT13All0
ORF1ab/nsp676A76VgCcgTc33AY.10.001187
ORF1ab/nsp676A76VgCcgTc33AY.1170.000254
ORF1ab/nsp676A76VgCcgTc33AY.1190.000106
ORF1ab/nsp676A76VgCcgTc33AY.1210.000406
ORF1ab/nsp676A76VgCcgTc33AY.260.000085
ORF1ab/nsp676A76AgcCgcT23AY.330.000134
ORF1ab/nsp676A76AgcCgcA13AY.330.000067
ORF1ab/nsp676A76TGccAcc33AY.420.000121
ORF1ab/nsp676A76VgCcgTc33AY.450.000365
ORF1ab/nsp676A76AgcCgcT33AY.460.000312
ORF1ab/nsp676A76AgcCgcT33AY.480.001395
ORF1ab/nsp676A76AgcCgcA33AY.540.000286
ORF1ab/nsp676A76AgcCgcT33AY.690.00056
ORF1ab/nsp676A76VgCcgTc33AY.760.014493
ORF1ab/nsp676A76VgCcgTc33AY.9.20.00011
ORF1ab/nsp676A76AgcCgcT33AY.930.000819
ORF1ab/nsp676A76AgcCgcT23B0.000256
ORF1ab/nsp676A76AgcCgcA13B0.000128
ORF1ab/nsp676A76VgCcgTc33B.10.000027
ORF1ab/nsp676A76AgcCgcT33B.1.1.2220.000612
ORF1ab/nsp676A76VgCcgTc33B.1.177.100.002634
ORF1ab/nsp676A76AgcCgcT33B.1.2340.000396
ORF1ab/nsp676A76AgcCgcT33B.1.3460.003932
ORF1ab/nsp676A76AgcCgcT33B.1.5750.00091
ORF1ab/nsp676A76AgcCgcT33B.1.5760.00272
ORF1ab/nsp676A76AgcCgcT33B.1.5950.000783
ORF1ab/nsp676A76AgcCgcT33C.370.000348
ORF1ab/nsp676A76VgCcgTc33D.20.000225
ORF1ab/nsp676A76AgcCgcT33P.1.100.000808
ORF1ab/nsp676A76VgCcgTc33P.1.140.000143
ORF1ab/nsp676A76VgCcgTc33Q.30.000435
ORF1ab/nsp676A76VgCcgTc22A.20.001324
ORF1ab/nsp676A76AgcCgcT22A.290.010638
ORF1ab/nsp676A76AgcCgcT22AD.20.000438
ORF1ab/nsp676A76DgCcgAc22All0
ORF1ab/nsp676A76del1GCC-AT12All0
ORF1ab/nsp676A76del1gcCgc-12All0
ORF1ab/nsp676A76CGCCTGT12All0
ORF1ab/nsp676A76CGCcTGc12All0
ORF1ab/nsp676A76AgcCgcT22AY.1060.00067
ORF1ab/nsp676A76AgcCgcT22AY.1160.000574
ORF1ab/nsp676A76AgcCgcT22AY.116.10.000623
ORF1ab/nsp676A76TGccAcc22AY.1180.000125
ORF1ab/nsp676A76TGccAcc22AY.200.000078
ORF1ab/nsp676A76VgCcgTc22AY.3.10.000171
ORF1ab/nsp676A76AgcCgcT22AY.320.001065
ORF1ab/nsp676A76AgcCgcT22AY.340.000194
ORF1ab/nsp676A76VgCcgTc22AY.340.000194
ORF1ab/nsp676A76VgCcgTc22AY.34.10.00102
ORF1ab/nsp676A76SGccTcc22AY.40.000003
ORF1ab/nsp676A76AgcCgcT22AY.4.10.001475
ORF1ab/nsp676A76TGccAcc22AY.440.000012
ORF1ab/nsp676A76AgcCgcT22AY.46.60.000144
ORF1ab/nsp676A76TGccAcc22AY.50.000041
ORF1ab/nsp676A76AgcCgcT22AY.5.30.000675
ORF1ab/nsp676A76VgCcgTc22AY.590.001059
ORF1ab/nsp676A76VgCcgTc22AY.7.10.000225
ORF1ab/nsp676A76AgcCgcT22AY.700.000417
ORF1ab/nsp676A76VgCcgTc22AY.980.000158
ORF1ab/nsp676A76VgCcgTc22AY.98.10.000097
ORF1ab/nsp676A76AgcCgcT22AY.98.10.000097
ORF1ab/nsp676A76VgCcgTc22AZ.50.007018
ORF1ab/nsp676A76AgcCgcT22B.1.1.1570.001826
ORF1ab/nsp676A76AgcCgcT22B.1.1.280.000622
ORF1ab/nsp676A76AgcCgcT22B.1.1.3060.000877
ORF1ab/nsp676A76AgcCgcT22B.1.1.4160.00181
ORF1ab/nsp676A76VgCcgTc22B.1.1.4160.00181
ORF1ab/nsp676A76VgCcgTc22B.1.1.5190.000079
ORF1ab/nsp676A76GgCCgGA12B.1.1.70.000001
ORF1ab/nsp676A76GgCcgGc12B.1.1.70.000001
ORF1ab/nsp676A76AgcCgcT22B.1.1.700.000682
ORF1ab/nsp676A76AgcCgcT22B.1.1180.013423
ORF1ab/nsp676A76AgcCgcT22B.1.1430.042553
ORF1ab/nsp676A76VgCcgTc22B.1.1770.000026
ORF1ab/nsp676A76AgcCgcT22B.1.177.440.001038
ORF1ab/nsp676A76VgCcgTc22B.1.2210.000142
ORF1ab/nsp676A76SGccTcc22B.1.3510.000059
ORF1ab/nsp676A76delGCC---22B.1.3510.000059
ORF1ab/nsp676A76CGCCTGT12B.1.36.160.001425
ORF1ab/nsp676A76CGCcTGc12B.1.36.160.001425
ORF1ab/nsp676A76SGcCTcT12B.1.36.160.001425
ORF1ab/nsp676A76GgCCgGT12B.1.36.160.001425
ORF1ab/nsp676A76GgCcgGc12B.1.36.160.001425
ORF1ab/nsp676A76SGccTcc12B.1.36.160.001425
ORF1ab/nsp676A76VgCcgTc22B.1.36.270.001527
ORF1ab/nsp676A76AgcCgcT22B.1.3880.181818
ORF1ab/nsp676A76AgcCgcT22B.1.5610.000794
ORF1ab/nsp676A76delGCC---22B.1.617.20.000008
ORF1ab/nsp676A76AgcCgcT22B.1.621.10.001012
ORF1ab/nsp676A76AgcCgcT22B.1.6230.001073
ORF1ab/nsp676A76VgCcgTc22C.1.20.008511
ORF1ab/nsp676A76AgcCgcT22P.1.170.000324
ORF1ab/nsp676A76TGccAcc22P.1.170.000324
ORF1ab/nsp676A76AgcCgcT11A0.000387
ORF1ab/nsp676A76VgCcgTc11A.2.40.003367
ORF1ab/nsp676A76AgcCgcT11A.280.002646
ORF1ab/nsp676A76AgcCgcT11AE.50.018519
ORF1ab/nsp676A76AgcCgcT11AY.10.000396
ORF1ab/nsp676A76AgcCgcT11AY.100.00053
ORF1ab/nsp676A76SGccTcc11AY.1000.000046
ORF1ab/nsp676A76VgCcgTc11AY.1010.00049
ORF1ab/nsp676A76TGccAcc11AY.1020.000027
ORF1ab/nsp676A76AgcCgcT11AY.1040.001984
ORF1ab/nsp676A76AgcCgcT11AY.1050.000643
ORF1ab/nsp676A76VgCcgTc11AY.1080.001103
ORF1ab/nsp676A76AgcCgcT11AY.1100.000113
ORF1ab/nsp676A76AgcCgcT11AY.1110.000183
ORF1ab/nsp676A76AgcCgcA11AY.1140.000231
ORF1ab/nsp676A76VgCcgTc11AY.1160.000287
ORF1ab/nsp676A76TGccAcc11AY.1170.000085
ORF1ab/nsp676A76TGccAcc11AY.1190.000035
ORF1ab/nsp676A76AgcCgcT11AY.120.10.000321
ORF1ab/nsp676A76AgcCgcT11AY.160.00038
ORF1ab/nsp676A76AgcCgcT11AY.16.10.00047
ORF1ab/nsp676A76TGccAcc11AY.230.00007
ORF1ab/nsp676A76VgCcgTc11AY.230.00007
ORF1ab/nsp676A76AgcCgcT11AY.23.10.000417
ORF1ab/nsp676A76AgcCgcT11AY.240.000431
ORF1ab/nsp676A76SGccTcc11AY.250.000006
ORF1ab/nsp676A76delGCC---11AY.250.000006
ORF1ab/nsp676A76VgCcgTc11AY.270.000065
ORF1ab/nsp676A76AgcCgcT11AY.270.000065
ORF1ab/nsp676A76VgCcgTc11AY.300.000396
ORF1ab/nsp676A76AgcCgcT11AY.300.000396
ORF1ab/nsp676A76VgCcgTc11AY.320.000532
ORF1ab/nsp676A76AgcCgcT11AY.350.000233
ORF1ab/nsp676A76AgcCgcT11AY.370.000316
ORF1ab/nsp676A76TGccAcc11AY.390.000025
ORF1ab/nsp676A76delGCC---11AY.40.000002
ORF1ab/nsp676A76AgcCgcA11AY.4.2.10.000149
ORF1ab/nsp676A76AgcCgcT11AY.4.30.000842
ORF1ab/nsp676A76delGCC---11AY.4.50.000107
ORF1ab/nsp676A76TGccAcc11AY.4.50.000107
ORF1ab/nsp676A76AgcCgcT11AY.4.50.000107
ORF1ab/nsp676A76delGCC---11AY.420.00004
ORF1ab/nsp676A76SGccTcc11AY.430.000004
ORF1ab/nsp676A76del1GCC-AT11AY.430.000004
ORF1ab/nsp676A76delGCC---11AY.430.000004
ORF1ab/nsp676A76VgCcgTc11AY.46.50.000198
ORF1ab/nsp676A76VgCcgTc11AY.5.20.002463
ORF1ab/nsp676A76VgCcgTc11AY.5.30.000337
ORF1ab/nsp676A76TGccAcc11AY.5.30.000337
ORF1ab/nsp676A76AgcCgcT11AY.5.40.000277
ORF1ab/nsp676A76VgCcgTc11AY.530.000288
ORF1ab/nsp676A76AgcCgcT11AY.550.000917
ORF1ab/nsp676A76delGCC---11AY.60.000041
ORF1ab/nsp676A76AgcCgcA11AY.610.000105
ORF1ab/nsp676A76TGccAcc11AY.670.000464
ORF1ab/nsp676A76AgcCgcT11AY.680.000274
ORF1ab/nsp676A76VgCcgTc11AY.690.000187
ORF1ab/nsp676A76VgCcgTc11AY.70.000196
ORF1ab/nsp676A76delGCC---11AY.710.000475
ORF1ab/nsp676A76VgCcgTc11AY.740.000116
ORF1ab/nsp676A76AgcCgcT11AY.740.000116
ORF1ab/nsp676A76delGCC---11AY.750.000056
ORF1ab/nsp676A76AgcCgcA11AY.75.10.00018
ORF1ab/nsp676A76VgCcgTc11AY.75.10.00018
ORF1ab/nsp676A76VgCcgTc11AY.770.001127
ORF1ab/nsp676A76AgcCgcT11AY.780.001541
ORF1ab/nsp676A76TGccAcc11AY.840.000437
ORF1ab/nsp676A76SGccTcc11AY.850.000427
ORF1ab/nsp676A76AgcCgcT11AY.870.000833
ORF1ab/nsp676A76TGccAcc11AY.9.20.000037
ORF1ab/nsp676A76AgcCgcT11AY.900.000684
ORF1ab/nsp676A76AgcCgcT11AY.950.000761
ORF1ab/nsp676A76TGccAcc11AY.98.10.000048
ORF1ab/nsp676A76SGccTcc11B0.000128
ORF1ab/nsp676A76TGccAcc11B0.000128
ORF1ab/nsp676A76DgCcgAc11B.10.000009
ORF1ab/nsp676A76PGccCcc11B.10.000009
ORF1ab/nsp676A76delGCC---11B.10.000009
ORF1ab/nsp676A76GgCCgGA11B.1.10.000018
ORF1ab/nsp676A76AgcCgcT11B.1.1.1760.000439
ORF1ab/nsp676A76PGccCcc11B.1.1.2070.001182
ORF1ab/nsp676A76VgCcgTc11B.1.1.2100.005714
ORF1ab/nsp676A76TGccAcc11B.1.1.2140.000055
ORF1ab/nsp676A76delGCC---11B.1.1.2140.000055
ORF1ab/nsp676A76delGCC---11B.1.1.2210.010101
ORF1ab/nsp676A76AgcCgcT11B.1.1.2770.000759
ORF1ab/nsp676A76AgcCgcT11B.1.1.3010.001179
ORF1ab/nsp676A76AgcCgcT11B.1.1.3050.003861
ORF1ab/nsp676A76AgcCgcT11B.1.1.3110.000358
ORF1ab/nsp676A76VgCcgTc11B.1.1.3170.000412
ORF1ab/nsp676A76VgCcgTc11B.1.1.3230.014085
ORF1ab/nsp676A76AgcCgcT11B.1.1.3260.001761
ORF1ab/nsp676A76TGccAcc11B.1.1.3290.003846
ORF1ab/nsp676A76AgcCgcT11B.1.1.330.000421
ORF1ab/nsp676A76VgCcgTc11B.1.1.3450.043478
ORF1ab/nsp676A76AgcCgcT11B.1.1.3660.015873
ORF1ab/nsp676A76AgcCgcT11B.1.1.3850.004464
ORF1ab/nsp676A76AgcCgcT11B.1.1.3890.006061
ORF1ab/nsp676A76VgCcgTc11B.1.1.390.00051
ORF1ab/nsp676A76VgCcgTc11B.1.1.4820.023256
ORF1ab/nsp676A76AgcCgcT11B.1.1.5230.001563
ORF1ab/nsp676A76AgcCgcT11B.1.1110.001175
ORF1ab/nsp676A76SGccTcc11B.1.160.160.000929
ORF1ab/nsp676A76TGccAcc11B.1.1770.000013
ORF1ab/nsp676A76VgCcgTc11B.1.177.120.000152
ORF1ab/nsp676A76del1gcCgc-11B.1.177.180.00116
ORF1ab/nsp676A76delGCC---11B.1.177.40.000211
ORF1ab/nsp676A76AgcCgcT11B.1.177.50.001242
ORF1ab/nsp676A76AgcCgcT11B.1.177.600.000218
ORF1ab/nsp676A76AgcCgcT11B.1.177.620.001192
ORF1ab/nsp676A76VgCcgTc11B.1.177.690.001484
ORF1ab/nsp676A76delGCC---11B.1.177.760.002494
ORF1ab/nsp676A76AgcCgcT11B.1.177.790.002342
ORF1ab/nsp676A76VgCcgTc11B.1.177.820.000477
ORF1ab/nsp676A76AgcCgcT11B.1.177.820.000477
ORF1ab/nsp676A76AgcCgcT11B.1.177.860.000183
ORF1ab/nsp676A76DgCcgAc11B.1.20.000009
ORF1ab/nsp676A76TGccAcc11B.1.20.000009
ORF1ab/nsp676A76AgcCgcT11B.1.2140.003663
ORF1ab/nsp676A76AgcCgcT11B.1.2320.000537
ORF1ab/nsp676A76VgCcgTc11B.1.2430.00007
ORF1ab/nsp676A76AgcCgcT11B.1.2980.002114
ORF1ab/nsp676A76AgcCgcT11B.1.3240.001605
ORF1ab/nsp676A76VgCcgTc11B.1.3290.000608
ORF1ab/nsp676A76VgCcgTc11B.1.3380.008621
ORF1ab/nsp676A76AgcCgcT11B.1.3400.004292
ORF1ab/nsp676A76AgcCgcT11B.1.3500.002933
ORF1ab/nsp676A76GgCcgGc11B.1.351.20.000303
ORF1ab/nsp676A76VgCcgTc11B.1.351.50.0006
ORF1ab/nsp676A76AgcCgcT11B.1.36.160.001425
ORF1ab/nsp676A76AgcCgcT11B.1.36.170.000494
ORF1ab/nsp676A76TGccAcc11B.1.36.290.000517
ORF1ab/nsp676A76AgcCgcT11B.1.36.80.001
ORF1ab/nsp676A76AgcCgcT11B.1.3620.001541
ORF1ab/nsp676A76VgCcgTc11B.1.3890.001002
ORF1ab/nsp676A76AgcCgcT11B.1.3960.000706
ORF1ab/nsp676A76AgcCgcT11B.1.4090.000781
ORF1ab/nsp676A76AgcCgcA11B.1.4160.001269
ORF1ab/nsp676A76AgcCgcT11B.1.4170.028571
ORF1ab/nsp676A76VgCcgTc11B.1.4270.00005
ORF1ab/nsp676A76TGccAcc11B.1.4290.000024
ORF1ab/nsp676A76PGccCcc11B.1.4290.000024
ORF1ab/nsp676A76AgcCgcT11B.1.4360.001029
ORF1ab/nsp676A76AgcCgcT11B.1.4430.004673
ORF1ab/nsp676A76AgcCgcT11B.1.466.20.000391
ORF1ab/nsp676A76VgCcgTc11B.1.4970.000315
ORF1ab/nsp676A76AgcCgcT11B.1.5040.03125
ORF1ab/nsp676A76TGccAcc11B.1.5170.000427
ORF1ab/nsp676A76AgcCgcT11B.1.5250.000113
ORF1ab/nsp676A76TGccAcc11B.1.5260.000024
ORF1ab/nsp676A76AgcCgcT11B.1.5510.00129
ORF1ab/nsp676A76VgCcgTc11B.1.5740.002151
ORF1ab/nsp676A76VgCcgTc11B.1.5750.000303
ORF1ab/nsp676A76AgcCgcT11B.1.5820.000491
ORF1ab/nsp676A76delGCC---11B.1.5970.00463
ORF1ab/nsp676A76AgcCgcT11B.1.6030.010638
ORF1ab/nsp676A76AgcCgcT11B.1.6090.000479
ORF1ab/nsp676A76AgcCgcT11B.1.6120.002653
ORF1ab/nsp676A76SGccTcc11B.1.617.20.000004
ORF1ab/nsp676A76VgCcgTc11B.1.6190.000871
ORF1ab/nsp676A76AgcCgcT11B.1.6300.005236
ORF1ab/nsp676A76AgcCgcT11B.1.6370.000073
ORF1ab/nsp676A76AgcCgcT11B.1.80.001972
ORF1ab/nsp676A76AgcCgcT11C.110.010638
ORF1ab/nsp676A76VgCcgTc11C.180.002591
ORF1ab/nsp676A76AgcCgcT11D.20.000075
ORF1ab/nsp676A76delGCC---11N.40.004255
ORF1ab/nsp676A76SGccTcc11P.10.000016
ORF1ab/nsp676A76TGccAcc11P.10.000016
ORF1ab/nsp676A76PGccCcc11P.10.000016
ORF1ab/nsp676A76AgcCgcT11P.1.120.000484
ORF1ab/nsp676A76VgCcgTc11P.1.120.000484
ORF1ab/nsp676A76TGccAcc11P.1.150.000232
ORF1ab/nsp676A76delGCC---11P.1.150.000232
ORF1ab/nsp676A76VgCcgTc11P.20.000187
ORF1ab/nsp676A76AgcCgcT11Q.40.000455
ORF1ab/nsp676A76VgCcgTc11Q.70.001111
ORF1ab/nsp676A76AgcCgcT11R.10.00009
ORF1ab/nsp676A76delGCC---11U.30.003861