CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 76 | A76A | A3645A | syn | gcC | gcT | 6773 | 6693 | 0.988188 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76A | A3645A | syn | gcC | gcA | 6773 | 75 | 0.0110734 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76A | A3645A | syn | gcC | gcG | 6773 | 5 | 0.000738225 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76V | A3645V | nonsyn | gCc | gTc | 2176 | 2172 | 0.998162 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76V | A3645V | nonsyn | gCC | gTT | 2176 | 4 | 0.00183824 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76T | A3645T | nonsyn | Gcc | Acc | 1661 | 1659 | 0.998796 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76T | A3645T | nonsyn | GcC | AcT | 1661 | 2 | 0.00120409 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76S | A3645S | nonsyn | Gcc | Tcc | 36 | 34 | 0.944444 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76S | A3645S | nonsyn | GcC | TcT | 36 | 2 | 0.0555556 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76del | A3645del | del | GCC | --- | 27 | 27 | 1 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76G | A3645G | nonsyn | gCc | gGc | 6 | 3 | 0.5 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76G | A3645G | nonsyn | gCC | gGA | 6 | 2 | 0.333333 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76G | A3645G | nonsyn | gCC | gGT | 6 | 1 | 0.166667 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76P | A3645P | nonsyn | Gcc | Ccc | 4 | 4 | 1 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76F | A3645F | nonsyn | GCc | TTc | 3 | 2 | 0.666667 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76F | A3645F | nonsyn | GCC | TTT | 3 | 1 | 0.333333 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76D | A3645D | nonsyn | gCc | gAc | 2 | 2 | 1 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76del1 | A3645del1 | del | GCC | -AT | 2 | 1 | 0.5 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76del1 | A3645del1 | del | gcC | gc- | 2 | 1 | 0.5 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76C | A3645C | nonsyn | GCC | TGT | 2 | 1 | 0.5 | 11198-11200 |
ORF1ab/nsp6 | 76 | A76C | A3645C | nonsyn | GCc | TGc | 2 | 1 | 0.5 | 11198-11200 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 6693 | 6773 | All | 0.00128 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 75 | 6773 | All | 0.000014 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcG | 5 | 6773 | All | 0.000001 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2172 | 2176 | All | 0.000415 |
ORF1ab/nsp6 | 76 | A76V | gCC | gTT | 4 | 2176 | All | 0.000001 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1659 | 1661 | All | 0.000317 |
ORF1ab/nsp6 | 76 | A76T | GcC | AcT | 2 | 1661 | All | 0 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1354 | 1354 | AY.4 | 0.002107 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 997 | 1002 | B.1.1.7 | 0.000893 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 3 | 1002 | B.1.1.7 | 0.000003 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcG | 2 | 1002 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 727 | 750 | AY.4 | 0.001132 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 22 | 750 | AY.4 | 0.000034 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcG | 1 | 750 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 701 | 701 | AY.29 | 0.011057 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 573 | 573 | AY.84 | 0.250656 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 553 | 557 | B.1 | 0.005065 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 3 | 557 | B.1 | 0.000027 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcG | 1 | 557 | B.1 | 0.000009 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 530 | 542 | AY.103 | 0.003291 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 12 | 542 | AY.103 | 0.000075 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 354 | 354 | B.1.177.21 | 0.02707 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 301 | 303 | AY.4 | 0.000468 |
ORF1ab/nsp6 | 76 | A76V | gCC | gTT | 2 | 303 | AY.4 | 0.000003 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 265 | 265 | B.1.177.83 | 0.392593 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 246 | 246 | AY.3 | 0.002447 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 207 | 210 | B.1.617.2 | 0.000779 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 3 | 210 | B.1.617.2 | 0.000011 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 205 | 205 | B.1.1.7 | 0.000184 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 187 | 189 | AY.43 | 0.000828 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 2 | 189 | AY.43 | 0.000009 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 161 | 161 | AY.43 | 0.000713 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 150 | 150 | B.1.617.2 | 0.000565 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 128 | 135 | B.1.2 | 0.001127 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 7 | 135 | B.1.2 | 0.000062 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 131 | 131 | B.1.429 | 0.003082 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 120 | 120 | AY.44 | 0.00073 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 93 | 103 | AY.5 | 0.00192 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 10 | 103 | AY.5 | 0.000206 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 91 | 91 | B.1.177 | 0.001198 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 84 | 84 | AY.44 | 0.000511 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 82 | 82 | AY.102 | 0.002174 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 79 | 79 | AY.6 | 0.003249 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 68 | 68 | B.1.617.2 | 0.000256 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 63 | 63 | B.1.351.2 | 0.019062 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 62 | 62 | P.1 | 0.000977 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 58 | 58 | AY.25 | 0.000349 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 54 | 54 | AY.47 | 0.00168 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 51 | 51 | AY.39 | 0.00126 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 44 | 44 | AY.46.4 | 0.007238 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 43 | 43 | AY.113 | 0.006123 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 43 | 43 | AY.25 | 0.000259 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 43 | 43 | B.1.377 | 0.196347 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 42 | 42 | B.1.596 | 0.00366 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 34 | 36 | All | 0.000007 |
ORF1ab/nsp6 | 76 | A76S | GcC | TcT | 2 | 36 | All | 0 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 35 | 35 | B.1.258.17 | 0.003639 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 34 | 34 | AY.93 | 0.009285 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 34 | 34 | B.1.258 | 0.002263 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 32 | 32 | B.1.1 | 0.000581 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 30 | 30 | B.1.349 | 0.021444 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 27 | 27 | All | 0.000005 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 26 | 26 | AY.99.2 | 0.002396 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 25 | 25 | AY.100 | 0.00115 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 25 | 25 | B.1.1.7 | 0.000022 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 23 | 23 | AY.20 | 0.000894 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 23 | 23 | AY.29.1 | 0.005072 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 22 | 23 | AY.5 | 0.000454 |
ORF1ab/nsp6 | 76 | A76V | gCC | gTT | 1 | 23 | AY.5 | 0.000021 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 23 | 23 | B.1.1.432 | 0.029114 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 22 | 22 | B.1.177.73 | 0.012458 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 22 | 22 | B.1.526 | 0.000517 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 20 | 20 | AY.109 | 0.014793 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 20 | 20 | B.6 | 0.018198 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 19 | 19 | AY.107 | 0.008854 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 19 | 19 | AY.39 | 0.00047 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 18 | 18 | AY.3 | 0.000179 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 17 | 17 | AY.75 | 0.000952 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 17 | 17 | B.1.1.216 | 0.015138 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 17 | 17 | B.1.1.434 | 0.005925 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 15 | 15 | AY.46 | 0.001561 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 15 | 15 | AY.9.2 | 0.000551 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 15 | 15 | B.1.2 | 0.000132 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 15 | 15 | B.1.491 | 0.789474 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 14 | 14 | AY.120.1 | 0.004494 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 14 | 14 | AY.42 | 0.000563 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 14 | 14 | AY.46.2 | 0.008895 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 14 | 14 | AY.46.6 | 0.001011 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 14 | 14 | AY.73 | 0.009315 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 13 | 13 | P.2 | 0.002426 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 12 | 12 | AY.117 | 0.001014 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 11 | 11 | AY.45 | 0.001339 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 11 | 11 | AY.6 | 0.000452 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 11 | 11 | B.1.525 | 0.001245 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 11 | 11 | B.1.617.1 | 0.001419 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 11 | 11 | N.5 | 0.019435 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 10 | 10 | B.1.177.32 | 0.013495 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 10 | 10 | B.1.241 | 0.008117 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 9 | 10 | Q.8 | 0.001484 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcG | 1 | 10 | Q.8 | 0.000165 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 9 | 9 | AY.100 | 0.000414 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 9 | 9 | AY.4.4 | 0.003682 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 9 | 9 | AY.5.4 | 0.00249 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 9 | 9 | B.1.311 | 0.002471 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 9 | 9 | B.1.617.1 | 0.001161 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 8 | 8 | AY.36 | 0.001186 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 5 | 8 | B.1.1.214 | 0.000277 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 3 | 8 | B.1.1.214 | 0.000166 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 8 | 8 | B.1.210 | 0.017058 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 8 | 8 | B.1.336 | 0.019512 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 7 | 7 | AY.12 | 0.002212 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 7 | 7 | AY.85 | 0.00299 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 7 | 7 | B.1.177.40 | 0.036082 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 7 | 7 | B.1.177.43 | 0.01034 |
ORF1ab/nsp6 | 76 | A76G | gCc | gGc | 3 | 6 | All | 0.000001 |
ORF1ab/nsp6 | 76 | A76G | gCC | gGA | 2 | 6 | All | 0 |
ORF1ab/nsp6 | 76 | A76G | gCC | gGT | 1 | 6 | All | 0 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 6 | 6 | AY.29.1 | 0.001323 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 6 | 6 | AY.84 | 0.002625 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 6 | 6 | B.1.214.3 | 0.042857 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 6 | 6 | B.1.239 | 0.007326 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 5 | 5 | AY.106 | 0.001674 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 5 | 5 | B.1.210 | 0.010661 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 76 | A76T | GcC | AcT | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 76 | A76P | Gcc | Ccc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 4 | 4 | B.1.258.9 | 0.02 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 4 | 4 | B.1.433 | 0.01278 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 4 | 4 | B.1.602 | 0.026144 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 4 | 4 | P.1.16 | 0.001496 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 3 | 3 | 0.166667 | |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 2 | 3 | 0.111111 | |
ORF1ab/nsp6 | 76 | A76F | GCc | TTc | 2 | 3 | 0.111111 | |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 3 | 0.111111 | |
ORF1ab/nsp6 | 76 | A76F | GCC | TTT | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 76 | A76V | gCC | gTT | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 76 | A76S | GcC | TcT | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 76 | A76F | GCc | TTc | 2 | 3 | All | 0 |
ORF1ab/nsp6 | 76 | A76F | GCC | TTT | 1 | 3 | All | 0 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 3 | AY.33 | 0.000134 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 1 | 3 | AY.33 | 0.000067 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 3 | 3 | AY.76 | 0.014493 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 3 | B | 0.000256 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 1 | 3 | B | 0.000128 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 3 | 3 | B.1.177.10 | 0.002634 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 3 | 3 | B.1.346 | 0.003932 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 3 | 3 | P.1.10 | 0.000808 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | A.29 | 0.010638 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp6 | 76 | A76D | gCc | gAc | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 76 | A76del1 | GCC | -AT | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 76 | A76del1 | gcC | gc- | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 76 | A76C | GCC | TGT | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 76 | A76C | GCc | TGc | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | AZ.5 | 0.007018 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp6 | 76 | A76G | gCC | gGA | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 76 | A76G | gCc | gGc | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | B.1.118 | 0.013423 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | B.1.143 | 0.042553 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp6 | 76 | A76C | GCC | TGT | 1 | 2 | B.1.36.16 | 0.001425 |
ORF1ab/nsp6 | 76 | A76C | GCc | TGc | 1 | 2 | B.1.36.16 | 0.001425 |
ORF1ab/nsp6 | 76 | A76S | GcC | TcT | 1 | 2 | B.1.36.16 | 0.001425 |
ORF1ab/nsp6 | 76 | A76G | gCC | gGT | 1 | 2 | B.1.36.16 | 0.001425 |
ORF1ab/nsp6 | 76 | A76G | gCc | gGc | 1 | 2 | B.1.36.16 | 0.001425 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 1 | 2 | B.1.36.16 | 0.001425 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | B.1.388 | 0.181818 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 2 | 2 | C.1.2 | 0.008511 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AE.5 | 0.018519 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 76 | A76del1 | GCC | -AT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 76 | A76D | gCc | gAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 76 | A76P | Gcc | Ccc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 76 | A76G | gCC | gGA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp6 | 76 | A76P | Gcc | Ccc | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.1.323 | 0.014085 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.1.345 | 0.043478 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.1.366 | 0.015873 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.1.482 | 0.023256 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp6 | 76 | A76del1 | gcC | gc- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp6 | 76 | A76D | gCc | gAc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp6 | 76 | A76G | gCc | gGc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcA | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 76 | A76P | Gcc | Ccc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.504 | 0.03125 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.603 | 0.010638 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 76 | A76S | Gcc | Tcc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 76 | A76P | Gcc | Ccc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp6 | 76 | A76T | Gcc | Acc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp6 | 76 | A76V | gCc | gTc | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp6 | 76 | A76A | gcC | gcT | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp6 | 76 | A76del | GCC | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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