CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 54 & Codon = gcA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp654A54AA3623AsyngcTgcA6981620.23209211132-11134

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp654A54AgcTgcA162698All0.000031
ORF1ab/nsp654A54AgcTgcA9194B.1.617.20.000343
ORF1ab/nsp654A54AgcTgcA4950AY.350.011419
ORF1ab/nsp654A54AgcTgcA123B.1.1.70.000001
ORF1ab/nsp654A54AgcTgcA55AY.16.10.00235
ORF1ab/nsp654A54AgcTgcA14AY.440.000006
ORF1ab/nsp654A54AgcTgcA33AY.480.001395
ORF1ab/nsp654A54AgcTgcA12AY.230.00007
ORF1ab/nsp654A54AgcTgcA11AY.190.00114
ORF1ab/nsp654A54AgcTgcA11AY.450.000122
ORF1ab/nsp654A54AgcTgcA11AY.470.000031
ORF1ab/nsp654A54AgcTgcA11AY.50.000021
ORF1ab/nsp654A54AgcTgcA11AY.540.000095
ORF1ab/nsp654A54AgcTgcA11AY.550.000917
ORF1ab/nsp654A54AgcTgcA11AY.9.20.000037
ORF1ab/nsp654A54AgcTgcA11B.1.1.250.000569
ORF1ab/nsp654A54AgcTgcA11B.1.2210.000071
ORF1ab/nsp654A54AgcTgcA11B.1.3320.003497
ORF1ab/nsp654A54AgcTgcA11P.1.20.001156

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.