CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 54 & Codon = Tct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp654A54SA3623SnonsynGctTct94379437111132-11134

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp654A54SGctTct94379437All0.001805
ORF1ab/nsp654A54SGctTct67516751B.1.1770.088894
ORF1ab/nsp654A54SGctTct15191519B.1.177.150.95836
ORF1ab/nsp654A54SGctTct164164B.1.177.141
ORF1ab/nsp654A54SGctTct136136AA.10.985507
ORF1ab/nsp654A54SGctTct128128AA.20.984615
ORF1ab/nsp654A54SGctTct110110AA.41
ORF1ab/nsp654A54SGctTct109109AA.71
ORF1ab/nsp654A54SGctTct103103B.1.177.781
ORF1ab/nsp654A54SGctTct6262AA.51
ORF1ab/nsp654A54SGctTct6161AA.60.983871
ORF1ab/nsp654A54SGctTct5858B.10.000531
ORF1ab/nsp654A54SGctTct4545AA.81
ORF1ab/nsp654A54SGctTct3737AA.31
ORF1ab/nsp654A54SGctTct3232B.1.160.300.095238
ORF1ab/nsp654A54SGctTct1818B.1.1600.000561
ORF1ab/nsp654A54SGctTct1010B.1.10.000181
ORF1ab/nsp654A54SGctTct88B.1.177.440.004152
ORF1ab/nsp654A54SGctTct77B.1.177.690.010386
ORF1ab/nsp654A54SGctTct66B.1.177.620.007151
ORF1ab/nsp654A54SGctTct55B.1.2360.010267
ORF1ab/nsp654A54SGctTct44B.1.177.310.045977
ORF1ab/nsp654A54SGctTct44B.1.2210.000284
ORF1ab/nsp654A54SGctTct33B0.000383
ORF1ab/nsp654A54SGctTct33B.1.177.570.000843
ORF1ab/nsp654A54SGctTct33B.1.177.650.001996
ORF1ab/nsp654A54SGctTct33B.1.177.750.003122
ORF1ab/nsp654A54SGctTct22AY.140.000176
ORF1ab/nsp654A54SGctTct22AY.300.000791
ORF1ab/nsp654A54SGctTct22B.1.1.70.000002
ORF1ab/nsp654A54SGctTct22B.1.177.40.000422
ORF1ab/nsp654A54SGctTct22B.1.177.400.010309
ORF1ab/nsp654A54SGctTct22B.1.177.430.002954
ORF1ab/nsp654A54SGctTct22B.1.177.540.001213
ORF1ab/nsp654A54SGctTct22B.1.177.70.00033
ORF1ab/nsp654A54SGctTct22B.1.177.860.000367
ORF1ab/nsp654A54SGctTct22B.1.20.000018
ORF1ab/nsp654A54SGctTct22B.1.2220.003384
ORF1ab/nsp654A54SGctTct11AD.20.000219
ORF1ab/nsp654A54SGctTct11AY.1200.000037
ORF1ab/nsp654A54SGctTct11AY.40.000002
ORF1ab/nsp654A54SGctTct11AY.440.000006
ORF1ab/nsp654A54SGctTct11AY.50.000021
ORF1ab/nsp654A54SGctTct11B.1.1.3150.008475
ORF1ab/nsp654A54SGctTct11B.1.1.390.00051
ORF1ab/nsp654A54SGctTct11B.1.1.700.000341
ORF1ab/nsp654A54SGctTct11B.1.160.200.008929
ORF1ab/nsp654A54SGctTct11B.1.160.280.002924
ORF1ab/nsp654A54SGctTct11B.1.160.90.007194
ORF1ab/nsp654A54SGctTct11B.1.177.210.000076
ORF1ab/nsp654A54SGctTct11B.1.177.60.000977
ORF1ab/nsp654A54SGctTct11B.1.177.730.000566
ORF1ab/nsp654A54SGctTct11B.1.177.770.000726
ORF1ab/nsp654A54SGctTct11B.1.177.830.001481
ORF1ab/nsp654A54SGctTct11B.1.3620.001541
ORF1ab/nsp654A54SGctTct11B.1.3750.00082
ORF1ab/nsp654A54SGctTct11B.1.4160.001269
ORF1ab/nsp654A54SGctTct11B.1.416.10.001563
ORF1ab/nsp654A54SGctTct11B.1.6000.005848
ORF1ab/nsp654A54SGctTct11B.1.617.20.000004
ORF1ab/nsp654A54SGctTct11B.1.780.008547
ORF1ab/nsp654A54SGctTct11P.10.000016
ORF1ab/nsp654A54SGctTct11Q.10.000126
ORF1ab/nsp654A54SGctTct11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.