CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 54 | A54S | A3623S | nonsyn | Gct | Tct | 9437 | 9437 | 1 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54A | A3623A | syn | gcT | gcC | 698 | 512 | 0.733524 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54A | A3623A | syn | gcT | gcA | 698 | 162 | 0.232092 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54A | A3623A | syn | gcT | gcG | 698 | 24 | 0.034384 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54del | A3623del | del | GCT | --- | 55 | 55 | 1 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54V | A3623V | nonsyn | gCt | gTt | 39 | 39 | 1 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54T | A3623T | nonsyn | Gct | Act | 29 | 28 | 0.965517 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54T | A3623T | nonsyn | GcT | AcC | 29 | 1 | 0.0344828 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54del1 | A3623del1 | del | gcT | gc- | 15 | 12 | 0.8 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54del1 | A3623del1 | del | Gct | -ct | 15 | 3 | 0.2 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54G | A3623G | nonsyn | gCt | gGt | 10 | 6 | 0.6 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54G | A3623G | nonsyn | gCT | gGG | 10 | 2 | 0.2 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54G | A3623G | nonsyn | gCT | gGC | 10 | 2 | 0.2 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54F | A3623F | nonsyn | GCt | TTt | 7 | 7 | 1 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54E | A3623E | nonsyn | gCT | gAG | 2 | 2 | 1 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54D | A3623D | nonsyn | gCT | gAC | 2 | 2 | 1 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54P | A3623P | nonsyn | Gct | Cct | 2 | 2 | 1 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54N | A3623N | nonsyn | GCt | AAt | 1 | 1 | 1 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54del2 | A3623del2 | del | gCT | g-- | 1 | 1 | 1 | 11132-11134 |
ORF1ab/nsp6 | 54 | A54L | A3623L | nonsyn | GCt | CTt | 1 | 1 | 1 | 11132-11134 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 9437 | 9437 | All | 0.001805 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 6751 | 6751 | B.1.177 | 0.088894 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1519 | 1519 | B.1.177.15 | 0.95836 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 512 | 698 | All | 0.000098 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 162 | 698 | All | 0.000031 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcG | 24 | 698 | All | 0.000005 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 281 | 281 | B.1.1.258 | 0.915309 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 164 | 164 | B.1.177.14 | 1 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 136 | 136 | AA.1 | 0.985507 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 128 | 128 | AA.2 | 0.984615 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 110 | 110 | AA.4 | 1 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 109 | 109 | AA.7 | 1 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 103 | 103 | B.1.177.78 | 1 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 91 | 94 | B.1.617.2 | 0.000343 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcG | 2 | 94 | B.1.617.2 | 0.000008 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 94 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 62 | 62 | AA.5 | 1 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 61 | 61 | AA.6 | 0.983871 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 58 | 58 | B.1 | 0.000531 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 55 | 55 | All | 0.000011 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 49 | 50 | AY.35 | 0.011419 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 50 | AY.35 | 0.000233 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 48 | 48 | B.1 | 0.00044 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 45 | 45 | AA.8 | 1 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 39 | 39 | All | 0.000007 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 37 | 37 | AA.3 | 1 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 32 | 32 | B.1.160.30 | 0.095238 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 27 | 30 | AY.4 | 0.000042 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcG | 3 | 30 | AY.4 | 0.000005 |
ORF1ab/nsp6 | 54 | A54T | Gct | Act | 28 | 29 | All | 0.000005 |
ORF1ab/nsp6 | 54 | A54T | GcT | AcC | 1 | 29 | All | 0 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 19 | 23 | B.1.1.7 | 0.000017 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcG | 3 | 23 | B.1.1.7 | 0.000003 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 23 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 23 | 23 | B.1.177.72 | 0.077966 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 18 | 18 | B.1.160 | 0.000561 |
ORF1ab/nsp6 | 54 | A54del1 | gcT | gc- | 12 | 15 | All | 0.000002 |
ORF1ab/nsp6 | 54 | A54del1 | Gct | -ct | 3 | 15 | All | 0.000001 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 15 | 15 | C.34 | 0.555556 |
ORF1ab/nsp6 | 54 | A54T | Gct | Act | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 8 | 11 | B.1.2 | 0.00007 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcG | 3 | 11 | B.1.2 | 0.000026 |
ORF1ab/nsp6 | 54 | A54G | gCt | gGt | 6 | 10 | All | 0.000001 |
ORF1ab/nsp6 | 54 | A54G | gCT | gGG | 2 | 10 | All | 0 |
ORF1ab/nsp6 | 54 | A54G | gCT | gGC | 2 | 10 | All | 0 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcG | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 8 | 8 | B.1.177.44 | 0.004152 |
ORF1ab/nsp6 | 54 | A54F | GCt | TTt | 7 | 7 | All | 0.000001 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 7 | 7 | B.1.177.69 | 0.010386 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 6 | 6 | AY.29.1 | 0.001323 |
ORF1ab/nsp6 | 54 | A54T | Gct | Act | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp6 | 54 | A54F | GCt | TTt | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 6 | 6 | B.1.177.62 | 0.007151 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 6 | 6 | B.1.576 | 0.00544 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 5 | 5 | AY.16.1 | 0.00235 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 5 | 5 | B.1.236 | 0.010267 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp6 | 54 | A54G | gCT | gGG | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 54 | A54G | gCT | gGC | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 3 | 4 | AY.44 | 0.000018 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 4 | 4 | B.1.177.31 | 0.045977 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 3 | 3 | B | 0.000383 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 3 | 3 | B.1.177.65 | 0.001996 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 3 | 3 | B.1.177.75 | 0.003122 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp6 | 54 | A54T | Gct | Act | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 54 | A54D | gCT | gAC | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 54 | A54E | gCT | gAG | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 2 | 2 | A.28 | 0.005291 |
ORF1ab/nsp6 | 54 | A54P | Gct | Cct | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 54 | A54D | gCT | gAC | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 54 | A54E | gCT | gAG | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp6 | 54 | A54G | gCt | gGt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 2 | 2 | B | 0.000256 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 54 | A54del1 | gcT | gc- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 2 | 2 | B.1.177.40 | 0.010309 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 2 | 2 | B.1.177.43 | 0.002954 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 2 | 2 | B.1.222 | 0.003384 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 2 | 2 | B.1.289 | 0.005319 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp6 | 54 | A54del1 | gcT | gc- | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcG | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp6 | 54 | A54N | GCt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 54 | A54del2 | gCT | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 54 | A54L | GCt | CTt | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp6 | 54 | A54P | Gct | Cct | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp6 | 54 | A54T | Gct | Act | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp6 | 54 | A54del2 | gCT | g-- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 54 | A54G | gCt | gGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp6 | 54 | A54del1 | gcT | gc- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 54 | A54T | Gct | Act | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 54 | A54G | gCt | gGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 54 | A54del1 | gcT | gc- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 54 | A54N | GCt | AAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 54 | A54del1 | gcT | gc- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 54 | A54del1 | Gct | -ct | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp6 | 54 | A54T | Gct | Act | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.1.29 | 0.010309 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp6 | 54 | A54T | Gct | Act | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp6 | 54 | A54G | gCt | gGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp6 | 54 | A54del1 | gcT | gc- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 54 | A54F | GCt | TTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 54 | A54L | GCt | CTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp6 | 54 | A54del1 | gcT | gc- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp6 | 54 | A54del1 | gcT | gc- | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 54 | A54T | GcT | AcC | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp6 | 54 | A54del1 | Gct | -ct | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp6 | 54 | A54T | Gct | Act | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 54 | A54P | Gct | Cct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp6 | 54 | A54del1 | Gct | -ct | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.569 | 0.014493 |
ORF1ab/nsp6 | 54 | A54G | gCt | gGt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 54 | A54T | Gct | Act | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp6 | 54 | A54del1 | gcT | gc- | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp6 | 54 | A54del1 | gcT | gc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 54 | A54T | Gct | Act | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcG | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp6 | 54 | A54T | Gct | Act | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcC | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp6 | 54 | A54V | gCt | gTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp6 | 54 | A54A | gcT | gcA | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp6 | 54 | A54del | GCT | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp6 | 54 | A54S | Gct | Tct | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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