CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 54

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp654A54SA3623SnonsynGctTct94379437111132-11134
ORF1ab/nsp654A54AA3623AsyngcTgcC6985120.73352411132-11134
ORF1ab/nsp654A54AA3623AsyngcTgcA6981620.23209211132-11134
ORF1ab/nsp654A54AA3623AsyngcTgcG698240.03438411132-11134
ORF1ab/nsp654A54delA3623deldelGCT---5555111132-11134
ORF1ab/nsp654A54VA3623VnonsyngCtgTt3939111132-11134
ORF1ab/nsp654A54TA3623TnonsynGctAct29280.96551711132-11134
ORF1ab/nsp654A54TA3623TnonsynGcTAcC2910.034482811132-11134
ORF1ab/nsp654A54del1A3623del1delgcTgc-15120.811132-11134
ORF1ab/nsp654A54del1A3623del1delGct-ct1530.211132-11134
ORF1ab/nsp654A54GA3623GnonsyngCtgGt1060.611132-11134
ORF1ab/nsp654A54GA3623GnonsyngCTgGG1020.211132-11134
ORF1ab/nsp654A54GA3623GnonsyngCTgGC1020.211132-11134
ORF1ab/nsp654A54FA3623FnonsynGCtTTt77111132-11134
ORF1ab/nsp654A54EA3623EnonsyngCTgAG22111132-11134
ORF1ab/nsp654A54DA3623DnonsyngCTgAC22111132-11134
ORF1ab/nsp654A54PA3623PnonsynGctCct22111132-11134
ORF1ab/nsp654A54NA3623NnonsynGCtAAt11111132-11134
ORF1ab/nsp654A54del2A3623del2delgCTg--11111132-11134
ORF1ab/nsp654A54LA3623LnonsynGCtCTt11111132-11134

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp654A54SGctTct94379437All0.001805
ORF1ab/nsp654A54SGctTct67516751B.1.1770.088894
ORF1ab/nsp654A54SGctTct15191519B.1.177.150.95836
ORF1ab/nsp654A54AgcTgcC512698All0.000098
ORF1ab/nsp654A54AgcTgcA162698All0.000031
ORF1ab/nsp654A54AgcTgcG24698All0.000005
ORF1ab/nsp654A54AgcTgcC281281B.1.1.2580.915309
ORF1ab/nsp654A54SGctTct164164B.1.177.141
ORF1ab/nsp654A54SGctTct136136AA.10.985507
ORF1ab/nsp654A54SGctTct128128AA.20.984615
ORF1ab/nsp654A54SGctTct110110AA.41
ORF1ab/nsp654A54SGctTct109109AA.71
ORF1ab/nsp654A54SGctTct103103B.1.177.781
ORF1ab/nsp654A54AgcTgcA9194B.1.617.20.000343
ORF1ab/nsp654A54AgcTgcG294B.1.617.20.000008
ORF1ab/nsp654A54AgcTgcC194B.1.617.20.000004
ORF1ab/nsp654A54SGctTct6262AA.51
ORF1ab/nsp654A54SGctTct6161AA.60.983871
ORF1ab/nsp654A54SGctTct5858B.10.000531
ORF1ab/nsp654A54delGCT---5555All0.000011
ORF1ab/nsp654A54AgcTgcA4950AY.350.011419
ORF1ab/nsp654A54AgcTgcC150AY.350.000233
ORF1ab/nsp654A54AgcTgcC4848B.10.00044
ORF1ab/nsp654A54SGctTct4545AA.81
ORF1ab/nsp654A54VgCtgTt3939All0.000007
ORF1ab/nsp654A54SGctTct3737AA.31
ORF1ab/nsp654A54SGctTct3232B.1.160.300.095238
ORF1ab/nsp654A54AgcTgcC2730AY.40.000042
ORF1ab/nsp654A54AgcTgcG330AY.40.000005
ORF1ab/nsp654A54TGctAct2829All0.000005
ORF1ab/nsp654A54TGcTAcC129All0
ORF1ab/nsp654A54AgcTgcC1923B.1.1.70.000017
ORF1ab/nsp654A54AgcTgcG323B.1.1.70.000003
ORF1ab/nsp654A54AgcTgcA123B.1.1.70.000001
ORF1ab/nsp654A54AgcTgcC2323B.1.177.720.077966
ORF1ab/nsp654A54SGctTct1818B.1.1600.000561
ORF1ab/nsp654A54del1gcTgc-1215All0.000002
ORF1ab/nsp654A54del1Gct-ct315All0.000001
ORF1ab/nsp654A54AgcTgcC1515C.340.555556
ORF1ab/nsp654A54TGctAct1212B.1.1.70.000011
ORF1ab/nsp654A54AgcTgcC811B.1.20.00007
ORF1ab/nsp654A54AgcTgcG311B.1.20.000026
ORF1ab/nsp654A54GgCtgGt610All0.000001
ORF1ab/nsp654A54GgCTgGG210All0
ORF1ab/nsp654A54GgCTgGC210All0
ORF1ab/nsp654A54SGctTct1010B.1.10.000181
ORF1ab/nsp654A54VgCtgTt1010B.1.1.70.000009
ORF1ab/nsp654A54AgcTgcC1010B.1.1770.000132
ORF1ab/nsp654A54AgcTgcG88AY.260.000226
ORF1ab/nsp654A54delGCT---88B.1.1.70.000007
ORF1ab/nsp654A54SGctTct88B.1.177.440.004152
ORF1ab/nsp654A54FGCtTTt77All0.000001
ORF1ab/nsp654A54SGctTct77B.1.177.690.010386
ORF1ab/nsp654A54AgcTgcC66AY.29.10.001323
ORF1ab/nsp654A54TGctAct66AY.40.000009
ORF1ab/nsp654A54FGCtTTt66B.1.1770.000079
ORF1ab/nsp654A54SGctTct66B.1.177.620.007151
ORF1ab/nsp654A54AgcTgcC66B.1.5760.00544
ORF1ab/nsp654A54AgcTgcC66B.1.5960.000523
ORF1ab/nsp654A54AgcTgcA55AY.16.10.00235
ORF1ab/nsp654A54SGctTct55B.1.2360.010267
ORF1ab/nsp654A54AgcTgcC55D.20.000375
ORF1ab/nsp654A54GgCTgGG240.111111
ORF1ab/nsp654A54GgCTgGC240.111111
ORF1ab/nsp654A54delGCT---44AY.250.000024
ORF1ab/nsp654A54AgcTgcC34AY.440.000018
ORF1ab/nsp654A54AgcTgcA14AY.440.000006
ORF1ab/nsp654A54VgCtgTt44AY.470.000124
ORF1ab/nsp654A54VgCtgTt44B.10.000037
ORF1ab/nsp654A54SGctTct44B.1.177.310.045977
ORF1ab/nsp654A54SGctTct44B.1.2210.000284
ORF1ab/nsp654A54AgcTgcC33AY.1030.000019
ORF1ab/nsp654A54AgcTgcC33AY.250.000018
ORF1ab/nsp654A54delGCT---33AY.430.000013
ORF1ab/nsp654A54AgcTgcA33AY.480.001395
ORF1ab/nsp654A54SGctTct33B0.000383
ORF1ab/nsp654A54SGctTct33B.1.177.570.000843
ORF1ab/nsp654A54SGctTct33B.1.177.650.001996
ORF1ab/nsp654A54SGctTct33B.1.177.750.003122
ORF1ab/nsp654A54AgcTgcC33B.1.4290.000071
ORF1ab/nsp654A54AgcTgcC33B.1.5950.000783
ORF1ab/nsp654A54delGCT---33B.1.617.20.000011
ORF1ab/nsp654A54VgCtgTt33B.1.617.20.000011
ORF1ab/nsp654A54TGctAct220.111111
ORF1ab/nsp654A54DgCTgAC220.111111
ORF1ab/nsp654A54EgCTgAG220.111111
ORF1ab/nsp654A54delGCT---22A.280.005291
ORF1ab/nsp654A54PGctCct22All0
ORF1ab/nsp654A54DgCTgAC22All0
ORF1ab/nsp654A54EgCTgAG22All0
ORF1ab/nsp654A54SGctTct22AY.140.000176
ORF1ab/nsp654A54AgcTgcC12AY.230.00007
ORF1ab/nsp654A54AgcTgcA12AY.230.00007
ORF1ab/nsp654A54VgCtgTt22AY.30.00002
ORF1ab/nsp654A54SGctTct22AY.300.000791
ORF1ab/nsp654A54GgCtgGt22AY.40.000003
ORF1ab/nsp654A54AgcTgcC22B0.000256
ORF1ab/nsp654A54delGCT---22B.10.000018
ORF1ab/nsp654A54AgcTgcC22B.1.10.000036
ORF1ab/nsp654A54AgcTgcC22B.1.1.2200.003717
ORF1ab/nsp654A54SGctTct22B.1.1.70.000002
ORF1ab/nsp654A54del1gcTgc-22B.1.1.70.000002
ORF1ab/nsp654A54SGctTct22B.1.177.40.000422
ORF1ab/nsp654A54SGctTct22B.1.177.400.010309
ORF1ab/nsp654A54SGctTct22B.1.177.430.002954
ORF1ab/nsp654A54SGctTct22B.1.177.540.001213
ORF1ab/nsp654A54SGctTct22B.1.177.70.00033
ORF1ab/nsp654A54SGctTct22B.1.177.860.000367
ORF1ab/nsp654A54delGCT---22B.1.20.000018
ORF1ab/nsp654A54SGctTct22B.1.20.000018
ORF1ab/nsp654A54SGctTct22B.1.2220.003384
ORF1ab/nsp654A54AgcTgcC22B.1.2430.000139
ORF1ab/nsp654A54AgcTgcC22B.1.2890.005319
ORF1ab/nsp654A54AgcTgcC22B.1.3510.000059
ORF1ab/nsp654A54VgCtgTt22B.1.3610.002577
ORF1ab/nsp654A54delGCT---22B.1.4270.000101
ORF1ab/nsp654A54AgcTgcC22B.1.4270.000101
ORF1ab/nsp654A54delGCT---22B.1.5260.000047
ORF1ab/nsp654A54AgcTgcC22B.1.5820.000981
ORF1ab/nsp654A54del1gcTgc-22B.1.6270.00404
ORF1ab/nsp654A54AgcTgcG22B.1.6370.000146
ORF1ab/nsp654A54AgcTgcC11A.20.000662
ORF1ab/nsp654A54AgcTgcC11A.2.20.001689
ORF1ab/nsp654A54SGctTct11AD.20.000219
ORF1ab/nsp654A54NGCtAAt11All0
ORF1ab/nsp654A54del2gCTg--11All0
ORF1ab/nsp654A54LGCtCTt11All0
ORF1ab/nsp654A54AgcTgcC11AU.20.002421
ORF1ab/nsp654A54PGctCct11AY.1020.000027
ORF1ab/nsp654A54delGCT---11AY.1080.001103
ORF1ab/nsp654A54delGCT---11AY.1110.000183
ORF1ab/nsp654A54SGctTct11AY.1200.000037
ORF1ab/nsp654A54TGctAct11AY.120.10.000321
ORF1ab/nsp654A54AgcTgcA11AY.190.00114
ORF1ab/nsp654A54del2gCTg--11AY.250.000006
ORF1ab/nsp654A54VgCtgTt11AY.250.000006
ORF1ab/nsp654A54AgcTgcC11AY.30.00001
ORF1ab/nsp654A54GgCtgGt11AY.30.00001
ORF1ab/nsp654A54delGCT---11AY.30.00001
ORF1ab/nsp654A54AgcTgcC11AY.330.000067
ORF1ab/nsp654A54del1gcTgc-11AY.390.000025
ORF1ab/nsp654A54AgcTgcC11AY.39.10.00004
ORF1ab/nsp654A54delGCT---11AY.40.000002
ORF1ab/nsp654A54SGctTct11AY.40.000002
ORF1ab/nsp654A54delGCT---11AY.4.50.000107
ORF1ab/nsp654A54delGCT---11AY.420.00004
ORF1ab/nsp654A54AgcTgcG11AY.430.000004
ORF1ab/nsp654A54SGctTct11AY.440.000006
ORF1ab/nsp654A54AgcTgcA11AY.450.000122
ORF1ab/nsp654A54AgcTgcA11AY.470.000031
ORF1ab/nsp654A54AgcTgcA11AY.50.000021
ORF1ab/nsp654A54SGctTct11AY.50.000021
ORF1ab/nsp654A54AgcTgcA11AY.540.000095
ORF1ab/nsp654A54AgcTgcA11AY.550.000917
ORF1ab/nsp654A54AgcTgcC11AY.610.000105
ORF1ab/nsp654A54delGCT---11AY.660.00107
ORF1ab/nsp654A54AgcTgcC11AY.710.000475
ORF1ab/nsp654A54delGCT---11AY.750.000056
ORF1ab/nsp654A54VgCtgTt11AY.75.10.00018
ORF1ab/nsp654A54AgcTgcA11AY.9.20.000037
ORF1ab/nsp654A54TGctAct11B0.000128
ORF1ab/nsp654A54delGCT---11B0.000128
ORF1ab/nsp654A54GgCtgGt11B.10.000009
ORF1ab/nsp654A54del1gcTgc-11B.10.000009
ORF1ab/nsp654A54NGCtAAt11B.1.10.000018
ORF1ab/nsp654A54delGCT---11B.1.10.000018
ORF1ab/nsp654A54VgCtgTt11B.1.10.000018
ORF1ab/nsp654A54del1gcTgc-11B.1.10.000018
ORF1ab/nsp654A54del1Gct-ct11B.1.1.1370.0125
ORF1ab/nsp654A54delGCT---11B.1.1.1420.017544
ORF1ab/nsp654A54AgcTgcC11B.1.1.1710.003676
ORF1ab/nsp654A54TGctAct11B.1.1.1890.001513
ORF1ab/nsp654A54delGCT---11B.1.1.2140.000055
ORF1ab/nsp654A54AgcTgcA11B.1.1.250.000569
ORF1ab/nsp654A54AgcTgcC11B.1.1.290.010309
ORF1ab/nsp654A54SGctTct11B.1.1.3150.008475
ORF1ab/nsp654A54TGctAct11B.1.1.3690.000446
ORF1ab/nsp654A54AgcTgcC11B.1.1.3770.001381
ORF1ab/nsp654A54SGctTct11B.1.1.390.00051
ORF1ab/nsp654A54AgcTgcC11B.1.1.5190.00004
ORF1ab/nsp654A54GgCtgGt11B.1.1.70.000001
ORF1ab/nsp654A54SGctTct11B.1.1.700.000341
ORF1ab/nsp654A54del1gcTgc-11B.1.1600.000031
ORF1ab/nsp654A54FGCtTTt11B.1.1600.000031
ORF1ab/nsp654A54SGctTct11B.1.160.200.008929
ORF1ab/nsp654A54VgCtgTt11B.1.160.200.008929
ORF1ab/nsp654A54SGctTct11B.1.160.280.002924
ORF1ab/nsp654A54SGctTct11B.1.160.90.007194
ORF1ab/nsp654A54VgCtgTt11B.1.1770.000013
ORF1ab/nsp654A54LGCtCTt11B.1.1770.000013
ORF1ab/nsp654A54AgcTgcC11B.1.177.120.000152
ORF1ab/nsp654A54SGctTct11B.1.177.210.000076
ORF1ab/nsp654A54delGCT---11B.1.177.40.000211
ORF1ab/nsp654A54AgcTgcC11B.1.177.450.000381
ORF1ab/nsp654A54SGctTct11B.1.177.60.000977
ORF1ab/nsp654A54AgcTgcC11B.1.177.70.000165
ORF1ab/nsp654A54SGctTct11B.1.177.730.000566
ORF1ab/nsp654A54delGCT---11B.1.177.760.002494
ORF1ab/nsp654A54SGctTct11B.1.177.770.000726
ORF1ab/nsp654A54SGctTct11B.1.177.830.001481
ORF1ab/nsp654A54del1gcTgc-11B.1.20.000009
ORF1ab/nsp654A54VgCtgTt11B.1.20.000009
ORF1ab/nsp654A54AgcTgcC11B.1.2060.000816
ORF1ab/nsp654A54del1gcTgc-11B.1.2060.000816
ORF1ab/nsp654A54AgcTgcA11B.1.2210.000071
ORF1ab/nsp654A54VgCtgTt11B.1.2210.000071
ORF1ab/nsp654A54TGcTAcC11B.1.2360.002053
ORF1ab/nsp654A54AgcTgcC11B.1.2370.004975
ORF1ab/nsp654A54del1Gct-ct11B.1.2580.000067
ORF1ab/nsp654A54delGCT---11B.1.2580.000067
ORF1ab/nsp654A54delGCT---11B.1.258.30.001675
ORF1ab/nsp654A54VgCtgTt11B.1.3110.000275
ORF1ab/nsp654A54AgcTgcA11B.1.3320.003497
ORF1ab/nsp654A54delGCT---11B.1.3510.00003
ORF1ab/nsp654A54delGCT---11B.1.36.290.000517
ORF1ab/nsp654A54delGCT---11B.1.36.310.001751
ORF1ab/nsp654A54SGctTct11B.1.3620.001541
ORF1ab/nsp654A54VgCtgTt11B.1.3690.000285
ORF1ab/nsp654A54SGctTct11B.1.3750.00082
ORF1ab/nsp654A54delGCT---11B.1.3960.000706
ORF1ab/nsp654A54TGctAct11B.1.3960.000706
ORF1ab/nsp654A54SGctTct11B.1.4160.001269
ORF1ab/nsp654A54SGctTct11B.1.416.10.001563
ORF1ab/nsp654A54VgCtgTt11B.1.4270.00005
ORF1ab/nsp654A54VgCtgTt11B.1.4290.000024
ORF1ab/nsp654A54PGctCct11B.1.4290.000024
ORF1ab/nsp654A54AgcTgcC11B.1.5170.000427
ORF1ab/nsp654A54delGCT---11B.1.5250.000113
ORF1ab/nsp654A54AgcTgcC11B.1.5260.000024
ORF1ab/nsp654A54AgcTgcC11B.1.5640.000426
ORF1ab/nsp654A54del1Gct-ct11B.1.5640.000426
ORF1ab/nsp654A54AgcTgcC11B.1.5690.014493
ORF1ab/nsp654A54GgCtgGt11B.1.5950.000261
ORF1ab/nsp654A54TGctAct11B.1.5960.000087
ORF1ab/nsp654A54delGCT---11B.1.5970.00463
ORF1ab/nsp654A54SGctTct11B.1.6000.005848
ORF1ab/nsp654A54del1gcTgc-11B.1.6060.006024
ORF1ab/nsp654A54del1gcTgc-11B.1.617.20.000004
ORF1ab/nsp654A54SGctTct11B.1.617.20.000004
ORF1ab/nsp654A54TGctAct11B.1.6210.000089
ORF1ab/nsp654A54AgcTgcC11B.1.6230.000536
ORF1ab/nsp654A54AgcTgcG11B.1.6270.00202
ORF1ab/nsp654A54SGctTct11B.1.780.008547
ORF1ab/nsp654A54AgcTgcC11B.400.000364
ORF1ab/nsp654A54VgCtgTt11B.400.000364
ORF1ab/nsp654A54TGctAct11D.20.000075
ORF1ab/nsp654A54delGCT---11N.40.004255
ORF1ab/nsp654A54SGctTct11P.10.000016
ORF1ab/nsp654A54AgcTgcG11P.10.000016
ORF1ab/nsp654A54delGCT---11P.1.10.000318
ORF1ab/nsp654A54AgcTgcC11P.1.100.000269
ORF1ab/nsp654A54VgCtgTt11P.1.140.000048
ORF1ab/nsp654A54delGCT---11P.1.150.000232
ORF1ab/nsp654A54VgCtgTt11P.1.150.000232
ORF1ab/nsp654A54AgcTgcA11P.1.20.001156
ORF1ab/nsp654A54SGctTct11Q.10.000126
ORF1ab/nsp654A54delGCT---11Q.20.000613
ORF1ab/nsp654A54delGCT---11U.30.003861
ORF1ab/nsp654A54SGctTct11Z.10.00289