CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 4 | K4R | K3573R | nonsyn | aAa | aGa | 7073 | 7072 | 0.999859 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4R | K3573R | nonsyn | aAA | aGG | 7073 | 1 | 0.000141383 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4E | K3573E | nonsyn | Aaa | Gaa | 1045 | 1045 | 1 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4K | K3573K | syn | aaA | aaG | 140 | 140 | 1 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4Q | K3573Q | nonsyn | Aaa | Caa | 49 | 49 | 1 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4del | K3573del | del | AAA | --- | 42 | 42 | 1 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4N | K3573N | nonsyn | aaA | aaC | 26 | 18 | 0.692308 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4N | K3573N | nonsyn | aaA | aaT | 26 | 8 | 0.307692 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4I | K3573I | nonsyn | aAa | aTa | 21 | 14 | 0.666667 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4I | K3573I | nonsyn | aAA | aTC | 21 | 7 | 0.333333 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4T | K3573T | nonsyn | aAa | aCa | 20 | 19 | 0.95 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4T | K3573T | nonsyn | aAA | aCC | 20 | 1 | 0.05 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4L | K3573L | nonsyn | AAa | TTa | 11 | 7 | 0.636364 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4L | K3573L | nonsyn | AAA | CTC | 11 | 2 | 0.181818 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4L | K3573L | nonsyn | AAA | CTT | 11 | 2 | 0.181818 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4F | K3573F | nonsyn | AAA | TTC | 10 | 9 | 0.9 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4F | K3573F | nonsyn | AAA | TTT | 10 | 1 | 0.1 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4Y | K3573Y | nonsyn | AaA | TaC | 8 | 8 | 1 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4X | K3573X | nonsyn | Aaa | Taa | 8 | 8 | 1 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4del1 | K3573del1 | del | Aaa | -aa | 7 | 7 | 1 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4G | K3573G | nonsyn | AAa | GGa | 4 | 2 | 0.5 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4G | K3573G | nonsyn | AAA | GGG | 4 | 1 | 0.25 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4G | K3573G | nonsyn | AAA | GGT | 4 | 1 | 0.25 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4del2 | K3573del2 | del | AAa | --a | 2 | 1 | 0.5 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4del2 | K3573del2 | del | aAA | a-- | 2 | 1 | 0.5 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4D | K3573D | nonsyn | AaA | GaT | 1 | 1 | 1 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4S | K3573S | nonsyn | aAA | aGT | 1 | 1 | 1 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4V | K3573V | nonsyn | AAa | GTa | 1 | 1 | 1 | 10982-10984 |
ORF1ab/nsp6 | 4 | K4A | K3573A | nonsyn | AAa | GCa | 1 | 1 | 1 | 10982-10984 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 7072 | 7073 | All | 0.001353 |
ORF1ab/nsp6 | 4 | K4R | aAA | aGG | 1 | 7073 | All | 0 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 6680 | 6680 | P.1 | 0.105237 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1045 | 1045 | All | 0.0002 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 468 | 468 | B.1.627 | 0.945455 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 292 | 292 | B.1.631 | 0.983165 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 140 | 140 | All | 0.000027 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 124 | 124 | P.1.12 | 0.060019 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 102 | 102 | AY.4 | 0.000159 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 52 | 52 | P.1.15 | 0.012082 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 49 | 49 | All | 0.000009 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 49 | 49 | B.47 | 1 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 44 | 44 | B.1.1.7 | 0.000039 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 42 | 42 | All | 0.000008 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 39 | 39 | B.1.1.7 | 0.000035 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 36 | 36 | C.40 | 1 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 33 | 33 | AY.107 | 0.015377 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaC | 18 | 26 | All | 0.000003 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaT | 8 | 26 | All | 0.000002 |
ORF1ab/nsp6 | 4 | K4I | aAa | aTa | 14 | 21 | All | 0.000003 |
ORF1ab/nsp6 | 4 | K4I | aAA | aTC | 7 | 21 | All | 0.000001 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 21 | 21 | B.1.177 | 0.000277 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 19 | 20 | All | 0.000004 |
ORF1ab/nsp6 | 4 | K4T | aAA | aCC | 1 | 20 | All | 0 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 19 | 19 | P.1.1 | 0.006036 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 17 | 17 | B.1 | 0.000156 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 16 | 16 | B.1.177.82 | 0.007637 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp6 | 4 | K4L | AAa | TTa | 7 | 11 | All | 0.000001 |
ORF1ab/nsp6 | 4 | K4L | AAA | CTT | 2 | 11 | All | 0 |
ORF1ab/nsp6 | 4 | K4L | AAA | CTC | 2 | 11 | All | 0 |
ORF1ab/nsp6 | 4 | K4F | AAA | TTC | 9 | 10 | All | 0.000002 |
ORF1ab/nsp6 | 4 | K4F | AAA | TTT | 1 | 10 | All | 0 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp6 | 4 | K4Y | AaA | TaC | 8 | 8 | All | 0.000002 |
ORF1ab/nsp6 | 4 | K4X | Aaa | Taa | 8 | 8 | All | 0.000002 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 8 | 8 | B.1.1.354 | 0.035088 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 8 | 8 | P.1.7 | 0.002554 |
ORF1ab/nsp6 | 4 | K4del1 | Aaa | -aa | 7 | 7 | All | 0.000001 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 7 | 7 | P.1.10.1 | 0.056911 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 7 | 7 | P.1.16 | 0.002619 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaC | 5 | 6 | B.1.2 | 0.000044 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaT | 1 | 6 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 6 | 6 | B.1.279 | 0.003082 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp6 | 4 | K4I | aAa | aTa | 3 | 6 | P.1 | 0.000047 |
ORF1ab/nsp6 | 4 | K4I | aAA | aTC | 3 | 6 | P.1 | 0.000047 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 5 | 5 | P.5 | 0.068493 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp6 | 4 | K4G | AAa | GGa | 2 | 4 | All | 0 |
ORF1ab/nsp6 | 4 | K4G | AAA | GGG | 1 | 4 | All | 0 |
ORF1ab/nsp6 | 4 | K4G | AAA | GGT | 1 | 4 | All | 0 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 4 | 4 | B.6.4 | 0.181818 |
ORF1ab/nsp6 | 4 | K4F | AAA | TTC | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp6 | 4 | K4I | aAA | aTC | 2 | 4 | P.1.12 | 0.000968 |
ORF1ab/nsp6 | 4 | K4I | aAa | aTa | 2 | 4 | P.1.12 | 0.000968 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp6 | 4 | K4I | aAA | aTC | 2 | 4 | P.2 | 0.000373 |
ORF1ab/nsp6 | 4 | K4I | aAa | aTa | 2 | 4 | P.2 | 0.000373 |
ORF1ab/nsp6 | 4 | K4I | aAa | aTa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 3 | 3 | B.1.1.412 | 0.022901 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 3 | 3 | B.1.1.507 | 0.026087 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 3 | 3 | B.1.1.528 | 0.014423 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaC | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaC | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp6 | 4 | K4X | Aaa | Taa | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp6 | 4 | K4L | AAa | TTa | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp6 | 4 | K4Y | AaA | TaC | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 3 | 3 | P.1.13 | 0.002695 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 4 | K4G | AAa | GGa | 1 | 2 | 0.055556 | |
ORF1ab/nsp6 | 4 | K4G | AAA | GGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 2 | 2 | A | 0.000774 |
ORF1ab/nsp6 | 4 | K4del2 | aAA | a-- | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 4 | K4del2 | AAa | --a | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp6 | 4 | K4R | aAA | aGG | 1 | 2 | AY.32 | 0.000532 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 2 | AY.32 | 0.000532 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaT | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaC | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp6 | 4 | K4F | AAA | TTT | 1 | 2 | AY.79 | 0.001211 |
ORF1ab/nsp6 | 4 | K4F | AAA | TTC | 1 | 2 | AY.79 | 0.001211 |
ORF1ab/nsp6 | 4 | K4L | AAA | CTC | 1 | 2 | AY.79 | 0.001211 |
ORF1ab/nsp6 | 4 | K4L | AAA | CTT | 1 | 2 | AY.79 | 0.001211 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp6 | 4 | K4Y | AaA | TaC | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp6 | 4 | K4L | AAa | TTa | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp6 | 4 | K4X | Aaa | Taa | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaC | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp6 | 4 | K4F | AAA | TTC | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp6 | 4 | K4Y | AaA | TaC | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaC | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp6 | 4 | K4L | AAa | TTa | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp6 | 4 | K4X | Aaa | Taa | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp6 | 4 | K4F | AAA | TTC | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 4 | K4S | aAA | aGT | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 4 | K4D | AaA | GaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 4 | K4V | AAa | GTa | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 4 | K4A | AAa | GCa | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 4 | K4I | aAa | aTa | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 4 | K4N | aaA | aaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 4 | K4G | AAa | GGa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp6 | 4 | K4S | aAA | aGT | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 4 | K4D | AaA | GaT | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 4 | K4V | AAa | GTa | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 4 | K4A | AAa | GCa | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaT | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 4 | K4del2 | AAa | --a | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 4 | K4del1 | Aaa | -aa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 4 | K4L | AAA | CTC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp6 | 4 | K4I | aAa | aTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp6 | 4 | K4del1 | Aaa | -aa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp6 | 4 | K4del1 | Aaa | -aa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp6 | 4 | K4del1 | Aaa | -aa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp6 | 4 | K4del1 | Aaa | -aa | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp6 | 4 | K4X | Aaa | Taa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 4 | K4Y | AaA | TaC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 4 | K4T | aAA | aCC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 4 | K4G | AAA | GGG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp6 | 4 | K4del2 | aAA | a-- | 1 | 1 | B.1.113 | 0.015625 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 4 | K4del1 | Aaa | -aa | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp6 | 4 | K4I | aAa | aTa | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp6 | 4 | K4T | aAa | aCa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp6 | 4 | K4N | aaA | aaT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.36.2 | 0.010753 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 4 | K4I | aAa | aTa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp6 | 4 | K4L | AAA | CTT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 4 | K4Q | Aaa | Caa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 4 | K4del1 | Aaa | -aa | 1 | 1 | B.1.70 | 0.02439 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | B.1.84 | 0.020833 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp6 | 4 | K4K | aaA | aaG | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp6 | 4 | K4del | AAA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp6 | 4 | K4R | aAa | aGa | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp6 | 4 | K4E | Aaa | Gaa | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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