CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 4

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp64K4RK3573RnonsynaAaaGa707370720.99985910982-10984
ORF1ab/nsp64K4RK3573RnonsynaAAaGG707310.00014138310982-10984
ORF1ab/nsp64K4EK3573EnonsynAaaGaa10451045110982-10984
ORF1ab/nsp64K4KK3573KsynaaAaaG140140110982-10984
ORF1ab/nsp64K4QK3573QnonsynAaaCaa4949110982-10984
ORF1ab/nsp64K4delK3573deldelAAA---4242110982-10984
ORF1ab/nsp64K4NK3573NnonsynaaAaaC26180.69230810982-10984
ORF1ab/nsp64K4NK3573NnonsynaaAaaT2680.30769210982-10984
ORF1ab/nsp64K4IK3573InonsynaAaaTa21140.66666710982-10984
ORF1ab/nsp64K4IK3573InonsynaAAaTC2170.33333310982-10984
ORF1ab/nsp64K4TK3573TnonsynaAaaCa20190.9510982-10984
ORF1ab/nsp64K4TK3573TnonsynaAAaCC2010.0510982-10984
ORF1ab/nsp64K4LK3573LnonsynAAaTTa1170.63636410982-10984
ORF1ab/nsp64K4LK3573LnonsynAAACTC1120.18181810982-10984
ORF1ab/nsp64K4LK3573LnonsynAAACTT1120.18181810982-10984
ORF1ab/nsp64K4FK3573FnonsynAAATTC1090.910982-10984
ORF1ab/nsp64K4FK3573FnonsynAAATTT1010.110982-10984
ORF1ab/nsp64K4YK3573YnonsynAaATaC88110982-10984
ORF1ab/nsp64K4XK3573XnonsynAaaTaa88110982-10984
ORF1ab/nsp64K4del1K3573del1delAaa-aa77110982-10984
ORF1ab/nsp64K4GK3573GnonsynAAaGGa420.510982-10984
ORF1ab/nsp64K4GK3573GnonsynAAAGGG410.2510982-10984
ORF1ab/nsp64K4GK3573GnonsynAAAGGT410.2510982-10984
ORF1ab/nsp64K4del2K3573del2delAAa--a210.510982-10984
ORF1ab/nsp64K4del2K3573del2delaAAa--210.510982-10984
ORF1ab/nsp64K4DK3573DnonsynAaAGaT11110982-10984
ORF1ab/nsp64K4SK3573SnonsynaAAaGT11110982-10984
ORF1ab/nsp64K4VK3573VnonsynAAaGTa11110982-10984
ORF1ab/nsp64K4AK3573AnonsynAAaGCa11110982-10984

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp64K4RaAaaGa70727073All0.001353
ORF1ab/nsp64K4RaAAaGG17073All0
ORF1ab/nsp64K4RaAaaGa66806680P.10.105237
ORF1ab/nsp64K4EAaaGaa10451045All0.0002
ORF1ab/nsp64K4EAaaGaa468468B.1.6270.945455
ORF1ab/nsp64K4EAaaGaa292292B.1.6310.983165
ORF1ab/nsp64K4KaaAaaG140140All0.000027
ORF1ab/nsp64K4RaAaaGa124124P.1.120.060019
ORF1ab/nsp64K4EAaaGaa102102AY.40.000159
ORF1ab/nsp64K4RaAaaGa5252P.1.150.012082
ORF1ab/nsp64K4QAaaCaa4949All0.000009
ORF1ab/nsp64K4EAaaGaa4949B.471
ORF1ab/nsp64K4RaAaaGa4444B.1.1.70.000039
ORF1ab/nsp64K4delAAA---4242All0.000008
ORF1ab/nsp64K4KaaAaaG3939B.1.1.70.000035
ORF1ab/nsp64K4EAaaGaa3636C.401
ORF1ab/nsp64K4KaaAaaG3333AY.1070.015377
ORF1ab/nsp64K4NaaAaaC1826All0.000003
ORF1ab/nsp64K4NaaAaaT826All0.000002
ORF1ab/nsp64K4IaAaaTa1421All0.000003
ORF1ab/nsp64K4IaAAaTC721All0.000001
ORF1ab/nsp64K4RaAaaGa2121B.1.1770.000277
ORF1ab/nsp64K4TaAaaCa1920All0.000004
ORF1ab/nsp64K4TaAAaCC120All0
ORF1ab/nsp64K4RaAaaGa1919P.1.10.006036
ORF1ab/nsp64K4EAaaGaa1717B.10.000156
ORF1ab/nsp64K4RaAaaGa1616B.1.177.820.007637
ORF1ab/nsp64K4RaAaaGa1414B.10.000128
ORF1ab/nsp64K4QAaaCaa1414B.1.2430.000974
ORF1ab/nsp64K4RaAaaGa1313AY.40.00002
ORF1ab/nsp64K4delAAA---1313B.1.1.70.000012
ORF1ab/nsp64K4LAAaTTa711All0.000001
ORF1ab/nsp64K4LAAACTT211All0
ORF1ab/nsp64K4LAAACTC211All0
ORF1ab/nsp64K4FAAATTC910All0.000002
ORF1ab/nsp64K4FAAATTT110All0
ORF1ab/nsp64K4RaAaaGa1010B.1.10.000181
ORF1ab/nsp64K4KaaAaaG99B.1.617.20.000034
ORF1ab/nsp64K4YAaATaC88All0.000002
ORF1ab/nsp64K4XAaaTaa88All0.000002
ORF1ab/nsp64K4EAaaGaa88B.1.1.3540.035088
ORF1ab/nsp64K4KaaAaaG88P.1.70.002554
ORF1ab/nsp64K4del1Aaa-aa77All0.000001
ORF1ab/nsp64K4QAaaCaa77AY.1030.000043
ORF1ab/nsp64K4RaAaaGa77AY.440.000043
ORF1ab/nsp64K4KaaAaaG77B.1.4290.000165
ORF1ab/nsp64K4RaAaaGa77P.1.10.10.056911
ORF1ab/nsp64K4RaAaaGa77P.1.160.002619
ORF1ab/nsp64K4EAaaGaa66B.1.1770.000079
ORF1ab/nsp64K4NaaAaaC56B.1.20.000044
ORF1ab/nsp64K4NaaAaaT16B.1.20.000009
ORF1ab/nsp64K4KaaAaaG66B.1.2790.003082
ORF1ab/nsp64K4EAaaGaa66B.1.617.20.000023
ORF1ab/nsp64K4IaAaaTa36P.10.000047
ORF1ab/nsp64K4IaAAaTC36P.10.000047
ORF1ab/nsp64K4delAAA---55AY.40.000008
ORF1ab/nsp64K4QAaaCaa55B.1.20.000044
ORF1ab/nsp64K4EAaaGaa55P.50.068493
ORF1ab/nsp64K4delAAA---440.222222
ORF1ab/nsp64K4GAAaGGa24All0
ORF1ab/nsp64K4GAAAGGG14All0
ORF1ab/nsp64K4GAAAGGT14All0
ORF1ab/nsp64K4EAaaGaa44B.1.10.000073
ORF1ab/nsp64K4RaAaaGa44B.1.1.2140.000222
ORF1ab/nsp64K4EAaaGaa44B.1.360.000584
ORF1ab/nsp64K4RaAaaGa44B.1.617.20.000015
ORF1ab/nsp64K4EAaaGaa44B.6.40.181818
ORF1ab/nsp64K4FAAATTC44P.10.000063
ORF1ab/nsp64K4IaAAaTC24P.1.120.000968
ORF1ab/nsp64K4IaAaaTa24P.1.120.000968
ORF1ab/nsp64K4RaAaaGa44P.1.140.000191
ORF1ab/nsp64K4IaAAaTC24P.20.000373
ORF1ab/nsp64K4IaAaaTa24P.20.000373
ORF1ab/nsp64K4IaAaaTa33AY.40.000005
ORF1ab/nsp64K4QAaaCaa33AY.430.000013
ORF1ab/nsp64K4EAaaGaa33AY.440.000018
ORF1ab/nsp64K4KaaAaaG33B.1.10.000054
ORF1ab/nsp64K4EAaaGaa33B.1.1.250.001706
ORF1ab/nsp64K4RaAaaGa33B.1.1.280.000934
ORF1ab/nsp64K4EAaaGaa33B.1.1.4120.022901
ORF1ab/nsp64K4RaAaaGa33B.1.1.5070.026087
ORF1ab/nsp64K4RaAaaGa33B.1.1.5280.014423
ORF1ab/nsp64K4NaaAaaC33B.1.1.70.000003
ORF1ab/nsp64K4TaAaaCa33B.1.617.20.000011
ORF1ab/nsp64K4KaaAaaG33B.1.6280.001057
ORF1ab/nsp64K4RaAaaGa33C.370.000348
ORF1ab/nsp64K4EAaaGaa33D.20.000225
ORF1ab/nsp64K4NaaAaaC33P.10.000047
ORF1ab/nsp64K4XAaaTaa33P.10.000047
ORF1ab/nsp64K4LAAaTTa33P.10.000047
ORF1ab/nsp64K4YAaATaC33P.10.000047
ORF1ab/nsp64K4RaAaaGa33P.1.130.002695
ORF1ab/nsp64K4EAaaGaa220.111111
ORF1ab/nsp64K4KaaAaaG220.111111
ORF1ab/nsp64K4GAAaGGa120.055556
ORF1ab/nsp64K4GAAAGGT120.055556
ORF1ab/nsp64K4QAaaCaa22A0.000774
ORF1ab/nsp64K4del2aAAa--12All0
ORF1ab/nsp64K4del2AAa--a12All0
ORF1ab/nsp64K4KaaAaaG22AY.1030.000012
ORF1ab/nsp64K4EAaaGaa22AY.200.000078
ORF1ab/nsp64K4RaAaaGa22AY.250.000012
ORF1ab/nsp64K4delAAA---22AY.290.000032
ORF1ab/nsp64K4RaAAaGG12AY.320.000532
ORF1ab/nsp64K4RaAaaGa12AY.320.000532
ORF1ab/nsp64K4KaaAaaG22AY.40.000003
ORF1ab/nsp64K4QAaaCaa22AY.40.000003
ORF1ab/nsp64K4NaaAaaT12AY.40.000002
ORF1ab/nsp64K4NaaAaaC12AY.40.000002
ORF1ab/nsp64K4RaAaaGa22AY.4.20.000043
ORF1ab/nsp64K4KaaAaaG22AY.460.000208
ORF1ab/nsp64K4KaaAaaG22AY.50.000041
ORF1ab/nsp64K4FAAATTT12AY.790.001211
ORF1ab/nsp64K4FAAATTC12AY.790.001211
ORF1ab/nsp64K4LAAACTC12AY.790.001211
ORF1ab/nsp64K4LAAACTT12AY.790.001211
ORF1ab/nsp64K4TaAaaCa22AY.840.000875
ORF1ab/nsp64K4QAaaCaa22B.10.000018
ORF1ab/nsp64K4TaAaaCa22B.10.000018
ORF1ab/nsp64K4KaaAaaG22B.10.000018
ORF1ab/nsp64K4QAaaCaa22B.1.10.000036
ORF1ab/nsp64K4delAAA---22B.1.10.000036
ORF1ab/nsp64K4QAaaCaa22B.1.1.2910.001485
ORF1ab/nsp64K4QAaaCaa22B.1.1.3170.000823
ORF1ab/nsp64K4KaaAaaG22B.1.1.370.000386
ORF1ab/nsp64K4EAaaGaa22B.1.3690.00057
ORF1ab/nsp64K4RaAaaGa22D.20.00015
ORF1ab/nsp64K4KaaAaaG22P.10.000032
ORF1ab/nsp64K4YAaATaC22P.1.120.000968
ORF1ab/nsp64K4LAAaTTa22P.1.120.000968
ORF1ab/nsp64K4XAaaTaa22P.1.120.000968
ORF1ab/nsp64K4NaaAaaC22P.1.120.000968
ORF1ab/nsp64K4FAAATTC22P.1.120.000968
ORF1ab/nsp64K4YAaATaC22P.20.000373
ORF1ab/nsp64K4NaaAaaC22P.20.000373
ORF1ab/nsp64K4RaAaaGa22P.20.000373
ORF1ab/nsp64K4LAAaTTa22P.20.000373
ORF1ab/nsp64K4XAaaTaa22P.20.000373
ORF1ab/nsp64K4FAAATTC22P.20.000373
ORF1ab/nsp64K4RaAaaGa22R.10.00018
ORF1ab/nsp64K4RaAaaGa110.055556
ORF1ab/nsp64K4SaAAaGT110.055556
ORF1ab/nsp64K4DAaAGaT110.055556
ORF1ab/nsp64K4TaAaaCa110.055556
ORF1ab/nsp64K4VAAaGTa110.055556
ORF1ab/nsp64K4AAAaGCa110.055556
ORF1ab/nsp64K4IaAaaTa110.055556
ORF1ab/nsp64K4NaaAaaT110.055556
ORF1ab/nsp64K4GAAaGGa11A0.000387
ORF1ab/nsp64K4RaAaaGa11A.2.50.000499
ORF1ab/nsp64K4SaAAaGT11All0
ORF1ab/nsp64K4DAaAGaT11All0
ORF1ab/nsp64K4VAAaGTa11All0
ORF1ab/nsp64K4AAAaGCa11All0
ORF1ab/nsp64K4NaaAaaT11AY.1030.000006
ORF1ab/nsp64K4TaAaaCa11AY.1030.000006
ORF1ab/nsp64K4RaAaaGa11AY.1190.000035
ORF1ab/nsp64K4EAaaGaa11AY.230.00007
ORF1ab/nsp64K4KaaAaaG11AY.23.10.000417
ORF1ab/nsp64K4TaAaaCa11AY.250.000006
ORF1ab/nsp64K4KaaAaaG11AY.250.000006
ORF1ab/nsp64K4EAaaGaa11AY.250.000006
ORF1ab/nsp64K4delAAA---11AY.250.000006
ORF1ab/nsp64K4NaaAaaC11AY.260.000028
ORF1ab/nsp64K4KaaAaaG11AY.260.000028
ORF1ab/nsp64K4KaaAaaG11AY.29.10.000221
ORF1ab/nsp64K4RaAaaGa11AY.3.10.000085
ORF1ab/nsp64K4KaaAaaG11AY.320.000532
ORF1ab/nsp64K4TaAaaCa11AY.390.000025
ORF1ab/nsp64K4del2AAa--a11AY.40.000002
ORF1ab/nsp64K4del1Aaa-aa11AY.40.000002
ORF1ab/nsp64K4TaAaaCa11AY.40.000002
ORF1ab/nsp64K4RaAaaGa11AY.4.10.000737
ORF1ab/nsp64K4NaaAaaT11AY.4.20.000022
ORF1ab/nsp64K4QAaaCaa11AY.4.20.000022
ORF1ab/nsp64K4EAaaGaa11AY.4.20.000022
ORF1ab/nsp64K4KaaAaaG11AY.4.50.000107
ORF1ab/nsp64K4delAAA---11AY.4.50.000107
ORF1ab/nsp64K4TaAaaCa11AY.4.50.000107
ORF1ab/nsp64K4LAAACTC11AY.430.000004
ORF1ab/nsp64K4RaAaaGa11AY.430.000004
ORF1ab/nsp64K4delAAA---11AY.430.000004
ORF1ab/nsp64K4TaAaaCa11AY.430.000004
ORF1ab/nsp64K4delAAA---11AY.440.000006
ORF1ab/nsp64K4TaAaaCa11AY.440.000006
ORF1ab/nsp64K4KaaAaaG11AY.440.000006
ORF1ab/nsp64K4QAaaCaa11AY.450.000122
ORF1ab/nsp64K4EAaaGaa11AY.46.50.000198
ORF1ab/nsp64K4RaAaaGa11AY.46.60.000072
ORF1ab/nsp64K4QAaaCaa11AY.5.40.000277
ORF1ab/nsp64K4delAAA---11AY.540.000095
ORF1ab/nsp64K4delAAA---11AY.660.00107
ORF1ab/nsp64K4IaAaaTa11AY.750.000056
ORF1ab/nsp64K4EAaaGaa11AY.9.10.000084
ORF1ab/nsp64K4RaAaaGa11AY.920.000287
ORF1ab/nsp64K4del1Aaa-aa11B.10.000009
ORF1ab/nsp64K4NaaAaaT11B.10.000009
ORF1ab/nsp64K4TaAaaCa11B.1.10.000018
ORF1ab/nsp64K4EAaaGaa11B.1.1.10.000327
ORF1ab/nsp64K4EAaaGaa11B.1.1.1180.010204
ORF1ab/nsp64K4delAAA---11B.1.1.1590.004673
ORF1ab/nsp64K4KaaAaaG11B.1.1.1700.001247
ORF1ab/nsp64K4KaaAaaG11B.1.1.2860.002899
ORF1ab/nsp64K4del1Aaa-aa11B.1.1.3060.000438
ORF1ab/nsp64K4RaAaaGa11B.1.1.3120.001912
ORF1ab/nsp64K4del1Aaa-aa11B.1.1.370.000193
ORF1ab/nsp64K4EAaaGaa11B.1.1.370.000193
ORF1ab/nsp64K4del1Aaa-aa11B.1.1.4090.002833
ORF1ab/nsp64K4EAaaGaa11B.1.1.4320.001266
ORF1ab/nsp64K4QAaaCaa11B.1.1.500.000679
ORF1ab/nsp64K4TaAaaCa11B.1.1.5190.00004
ORF1ab/nsp64K4EAaaGaa11B.1.1.5260.003546
ORF1ab/nsp64K4XAaaTaa11B.1.1.70.000001
ORF1ab/nsp64K4YAaATaC11B.1.1.70.000001
ORF1ab/nsp64K4TaAAaCC11B.1.1.70.000001
ORF1ab/nsp64K4QAaaCaa11B.1.1.70.000001
ORF1ab/nsp64K4GAAAGGG11B.1.1.70.000001
ORF1ab/nsp64K4EAaaGaa11B.1.1.700.000341
ORF1ab/nsp64K4del2aAAa--11B.1.1130.015625
ORF1ab/nsp64K4delAAA---11B.1.1600.000031
ORF1ab/nsp64K4KaaAaaG11B.1.1600.000031
ORF1ab/nsp64K4NaaAaaT11B.1.1600.000031
ORF1ab/nsp64K4KaaAaaG11B.1.1770.000013
ORF1ab/nsp64K4delAAA---11B.1.1770.000013
ORF1ab/nsp64K4NaaAaaC11B.1.1770.000013
ORF1ab/nsp64K4delAAA---11B.1.177.150.000631
ORF1ab/nsp64K4delAAA---11B.1.177.40.000211
ORF1ab/nsp64K4TaAaaCa11B.1.177.620.001192
ORF1ab/nsp64K4delAAA---11B.1.177.630.002703
ORF1ab/nsp64K4RaAaaGa11B.1.177.70.000165
ORF1ab/nsp64K4EAaaGaa11B.1.177.730.000566
ORF1ab/nsp64K4delAAA---11B.1.177.90.001332
ORF1ab/nsp64K4EAaaGaa11B.1.20.000009
ORF1ab/nsp64K4del1Aaa-aa11B.1.2100.002132
ORF1ab/nsp64K4EAaaGaa11B.1.221.30.000833
ORF1ab/nsp64K4IaAaaTa11B.1.2320.000537
ORF1ab/nsp64K4RaAaaGa11B.1.2400.000216
ORF1ab/nsp64K4TaAaaCa11B.1.2580.000067
ORF1ab/nsp64K4EAaaGaa11B.1.3050.002151
ORF1ab/nsp64K4RaAaaGa11B.1.3110.000275
ORF1ab/nsp64K4EAaaGaa11B.1.3490.000715
ORF1ab/nsp64K4RaAaaGa11B.1.3490.000715
ORF1ab/nsp64K4NaaAaaT11B.1.351.20.000303
ORF1ab/nsp64K4QAaaCaa11B.1.360.000146
ORF1ab/nsp64K4EAaaGaa11B.1.36.20.010753
ORF1ab/nsp64K4RaAaaGa11B.1.4160.001269
ORF1ab/nsp64K4QAaaCaa11B.1.4270.00005
ORF1ab/nsp64K4EAaaGaa11B.1.4290.000024
ORF1ab/nsp64K4IaAaaTa11B.1.4290.000024
ORF1ab/nsp64K4EAaaGaa11B.1.466.20.000391
ORF1ab/nsp64K4EAaaGaa11B.1.5090.000866
ORF1ab/nsp64K4RaAaaGa11B.1.5250.000113
ORF1ab/nsp64K4KaaAaaG11B.1.5260.000024
ORF1ab/nsp64K4EAaaGaa11B.1.5510.00129
ORF1ab/nsp64K4KaaAaaG11B.1.5600.00463
ORF1ab/nsp64K4KaaAaaG11B.1.5760.000907
ORF1ab/nsp64K4RaAaaGa11B.1.5820.000491
ORF1ab/nsp64K4LAAACTT11B.1.617.20.000004
ORF1ab/nsp64K4delAAA---11B.1.617.20.000004
ORF1ab/nsp64K4QAaaCaa11B.1.617.20.000004
ORF1ab/nsp64K4EAaaGaa11B.1.6280.000352
ORF1ab/nsp64K4RaAaaGa11B.1.6370.000073
ORF1ab/nsp64K4KaaAaaG11B.1.6370.000073
ORF1ab/nsp64K4del1Aaa-aa11B.1.700.02439
ORF1ab/nsp64K4RaAaaGa11B.1.840.020833
ORF1ab/nsp64K4delAAA---11N.40.004255
ORF1ab/nsp64K4EAaaGaa11P.10.000016
ORF1ab/nsp64K4RaAaaGa11P.1.100.000269
ORF1ab/nsp64K4KaaAaaG11P.1.120.000484
ORF1ab/nsp64K4EAaaGaa11P.1.120.000484
ORF1ab/nsp64K4EAaaGaa11P.20.000187
ORF1ab/nsp64K4delAAA---11Q.10.000126
ORF1ab/nsp64K4RaAaaGa11Q.80.000165
ORF1ab/nsp64K4EAaaGaa11R.10.00009