CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 39

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp639E39KE3608KnonsynGaaAaa543543111087-11089
ORF1ab/nsp639E39DE3608DnonsyngaAgaC4984760.95582311087-11089
ORF1ab/nsp639E39DE3608DnonsyngaAgaT498220.044176711087-11089
ORF1ab/nsp639E39GE3608GnonsyngAagGa318318111087-11089
ORF1ab/nsp639E39EE3608EsyngaAgaG8080111087-11089
ORF1ab/nsp639E39QE3608QnonsynGaaCaa5858111087-11089
ORF1ab/nsp639E39XE3608XnonsynGaaTaa5050111087-11089
ORF1ab/nsp639E39delE3608deldelGAA---3939111087-11089
ORF1ab/nsp639E39AE3608AnonsyngAagCa35310.88571411087-11089
ORF1ab/nsp639E39AE3608AnonsyngAAgCT3520.057142911087-11089
ORF1ab/nsp639E39AE3608AnonsyngAAgCC3520.057142911087-11089
ORF1ab/nsp639E39VE3608VnonsyngAAgTT11100.90909111087-11089
ORF1ab/nsp639E39del1E3608del1delgAag-a1170.63636411087-11089
ORF1ab/nsp639E39del1E3608del1delGaa-aa1130.27272711087-11089
ORF1ab/nsp639E39del1E3608del1delgaAga-1110.090909111087-11089
ORF1ab/nsp639E39VE3608VnonsyngAagTa1110.090909111087-11089
ORF1ab/nsp639E39TE3608TnonsynGAAACC420.511087-11089
ORF1ab/nsp639E39TE3608TnonsynGAaACa420.511087-11089
ORF1ab/nsp639E39NE3608NnonsynGaAAaC22111087-11089
ORF1ab/nsp639E39del2E3608del2delgAAg--11111087-11089
ORF1ab/nsp639E39LE3608LnonsynGAaTTa11111087-11089

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp639E39KGaaAaa543543All0.000104
ORF1ab/nsp639E39DgaAgaC476498All0.000091
ORF1ab/nsp639E39DgaAgaT22498All0.000004
ORF1ab/nsp639E39DgaAgaC452452B.1.177.60.441406
ORF1ab/nsp639E39KGaaAaa340340B.1.5701
ORF1ab/nsp639E39GgAagGa318318All0.000061
ORF1ab/nsp639E39GgAagGa276276AY.40.00043
ORF1ab/nsp639E39KGaaAaa8585B.1.2580.005656
ORF1ab/nsp639E39EgaAgaG8080All0.000015
ORF1ab/nsp639E39QGaaCaa5858All0.000011
ORF1ab/nsp639E39XGaaTaa5050All0.00001
ORF1ab/nsp639E39EgaAgaG4242AY.40.000065
ORF1ab/nsp639E39delGAA---3939All0.000007
ORF1ab/nsp639E39AgAagCa3135All0.000006
ORF1ab/nsp639E39AgAAgCT235All0
ORF1ab/nsp639E39AgAAgCC235All0
ORF1ab/nsp639E39QGaaCaa3131B.1.20.000273
ORF1ab/nsp639E39DgaAgaT1724B.1.1770.000224
ORF1ab/nsp639E39DgaAgaC724B.1.1770.000092
ORF1ab/nsp639E39KGaaAaa1717B.10.000156
ORF1ab/nsp639E39QGaaCaa1414AY.1030.000087
ORF1ab/nsp639E39AgAagCa1012AY.40.000016
ORF1ab/nsp639E39AgAAgCT212AY.40.000003
ORF1ab/nsp639E39VgAAgTT1011All0.000002
ORF1ab/nsp639E39del1gAag-a711All0.000001
ORF1ab/nsp639E39del1Gaa-aa311All0.000001
ORF1ab/nsp639E39del1gaAga-111All0
ORF1ab/nsp639E39VgAagTa111All0
ORF1ab/nsp639E39KGaaAaa1010B.1.617.20.000038
ORF1ab/nsp639E39KGaaAaa99B.1.1.70.000008
ORF1ab/nsp639E39KGaaAaa88B.1.1.2220.001632
ORF1ab/nsp639E39delGAA---88B.1.1.70.000007
ORF1ab/nsp639E39EgaAgaG77AY.200.000272
ORF1ab/nsp639E39KGaaAaa77AY.40.000011
ORF1ab/nsp639E39XGaaTaa66B.10.000055
ORF1ab/nsp639E39QGaaCaa66B.1.1.70.000005
ORF1ab/nsp639E39GgAagGa66B.1.20.000053
ORF1ab/nsp639E39EgaAgaG66B.1.2580.000399
ORF1ab/nsp639E39KGaaAaa55AY.1020.000133
ORF1ab/nsp639E39KGaaAaa55B.1.10.000091
ORF1ab/nsp639E39TGAaACa240.111111
ORF1ab/nsp639E39AgAagCa240.111111
ORF1ab/nsp639E39AgAAgCC240.111111
ORF1ab/nsp639E39TGAAACC240.111111
ORF1ab/nsp639E39TGAAACC24All0
ORF1ab/nsp639E39TGAaACa24All0
ORF1ab/nsp639E39EgaAgaG44AY.1030.000025
ORF1ab/nsp639E39KGaaAaa44AY.330.000267
ORF1ab/nsp639E39delGAA---44AY.40.000006
ORF1ab/nsp639E39KGaaAaa44AY.430.000018
ORF1ab/nsp639E39GgAagGa44AY.440.000024
ORF1ab/nsp639E39QGaaCaa44B.10.000037
ORF1ab/nsp639E39XGaaTaa44B.1.1.1530.004381
ORF1ab/nsp639E39XGaaTaa44B.1.1.70.000004
ORF1ab/nsp639E39GgAagGa44B.1.438.10.000429
ORF1ab/nsp639E39AgAagCa44B.1.617.20.000015
ORF1ab/nsp639E39KGaaAaa44D.20.0003
ORF1ab/nsp639E39VgAAgTT44P.10.000063
ORF1ab/nsp639E39GgAagGa33AY.1000.000138
ORF1ab/nsp639E39KGaaAaa33AY.250.000018
ORF1ab/nsp639E39GgAagGa33AY.390.000074
ORF1ab/nsp639E39XGaaTaa33AY.430.000013
ORF1ab/nsp639E39AgAagCa33AY.9.20.00011
ORF1ab/nsp639E39KGaaAaa33AY.980.000237
ORF1ab/nsp639E39del1gAag-a23B.10.000018
ORF1ab/nsp639E39del1Gaa-aa13B.10.000009
ORF1ab/nsp639E39EgaAgaG33B.1.10.000054
ORF1ab/nsp639E39AgAagCa33B.1.1.5190.000119
ORF1ab/nsp639E39EgaAgaG33B.1.1.70.000003
ORF1ab/nsp639E39GgAagGa33B.1.1.70.000003
ORF1ab/nsp639E39XGaaTaa33B.1.1770.00004
ORF1ab/nsp639E39KGaaAaa33B.1.1770.00004
ORF1ab/nsp639E39GgAagGa33B.1.177.770.002179
ORF1ab/nsp639E39AgAagCa33B.1.20.000026
ORF1ab/nsp639E39XGaaTaa33B.1.2210.000213
ORF1ab/nsp639E39KGaaAaa33B.1.4290.000071
ORF1ab/nsp639E39GgAagGa33B.1.617.20.000011
ORF1ab/nsp639E39DgaAgaC220.111111
ORF1ab/nsp639E39KGaaAaa220.111111
ORF1ab/nsp639E39NGaAAaC220.111111
ORF1ab/nsp639E39NGaAAaC22All0
ORF1ab/nsp639E39DgaAgaT22AY.1030.000012
ORF1ab/nsp639E39VgAAgTT22AY.200.000078
ORF1ab/nsp639E39DgaAgaC22AY.230.000139
ORF1ab/nsp639E39AgAagCa22AY.250.000012
ORF1ab/nsp639E39GgAagGa22AY.250.000012
ORF1ab/nsp639E39VgAAgTT22AY.290.000032
ORF1ab/nsp639E39delGAA---22AY.350.000466
ORF1ab/nsp639E39DgaAgaC12AY.40.000002
ORF1ab/nsp639E39DgaAgaT12AY.40.000002
ORF1ab/nsp639E39EgaAgaG22AY.440.000012
ORF1ab/nsp639E39GgAagGa22AY.50.000041
ORF1ab/nsp639E39XGaaTaa22B0.000256
ORF1ab/nsp639E39delGAA---22B.10.000018
ORF1ab/nsp639E39DgaAgaC22B.10.000018
ORF1ab/nsp639E39XGaaTaa22B.1.10.000036
ORF1ab/nsp639E39KGaaAaa22B.1.1.2890.004167
ORF1ab/nsp639E39XGaaTaa22B.1.20.000018
ORF1ab/nsp639E39EgaAgaG22B.1.36.90.006431
ORF1ab/nsp639E39XGaaTaa22B.1.3980.005952
ORF1ab/nsp639E39EgaAgaG22B.1.4270.000101
ORF1ab/nsp639E39KGaaAaa22B.1.438.10.000215
ORF1ab/nsp639E39KGaaAaa22B.1.5960.000174
ORF1ab/nsp639E39AgAagCa22B.1.617.10.000258
ORF1ab/nsp639E39XGaaTaa22B.1.617.20.000008
ORF1ab/nsp639E39delGAA---22B.1.617.20.000008
ORF1ab/nsp639E39VgAAgTT22B.1.617.20.000008
ORF1ab/nsp639E39delGAA---22U.30.007722
ORF1ab/nsp639E39XGaaTaa110.055556
ORF1ab/nsp639E39XGaaTaa11A0.000387
ORF1ab/nsp639E39KGaaAaa11A.10.000282
ORF1ab/nsp639E39KGaaAaa11A.20.000662
ORF1ab/nsp639E39LGAaTTa11All0
ORF1ab/nsp639E39del2gAAg--11All0
ORF1ab/nsp639E39DgaAgaC11AP.10.001502
ORF1ab/nsp639E39KGaaAaa11AY.1050.000643
ORF1ab/nsp639E39GgAagGa11AY.1160.000287
ORF1ab/nsp639E39KGaaAaa11AY.1170.000085
ORF1ab/nsp639E39KGaaAaa11AY.120.10.000321
ORF1ab/nsp639E39KGaaAaa11AY.230.00007
ORF1ab/nsp639E39delGAA---11AY.230.00007
ORF1ab/nsp639E39XGaaTaa11AY.240.000431
ORF1ab/nsp639E39EgaAgaG11AY.250.000006
ORF1ab/nsp639E39delGAA---11AY.250.000006
ORF1ab/nsp639E39XGaaTaa11AY.260.000028
ORF1ab/nsp639E39KGaaAaa11AY.260.000028
ORF1ab/nsp639E39DgaAgaC11AY.30.00001
ORF1ab/nsp639E39AgAagCa11AY.340.000097
ORF1ab/nsp639E39KGaaAaa11AY.34.10.00051
ORF1ab/nsp639E39EgaAgaG11AY.350.000233
ORF1ab/nsp639E39KGaaAaa11AY.390.000025
ORF1ab/nsp639E39del1gaAga-11AY.40.000002
ORF1ab/nsp639E39XGaaTaa11AY.420.00004
ORF1ab/nsp639E39EgaAgaG11AY.430.000004
ORF1ab/nsp639E39delGAA---11AY.430.000004
ORF1ab/nsp639E39KGaaAaa11AY.450.000122
ORF1ab/nsp639E39delGAA---11AY.460.000104
ORF1ab/nsp639E39GgAagGa11AY.46.40.000165
ORF1ab/nsp639E39DgaAgaC11AY.50.000021
ORF1ab/nsp639E39XGaaTaa11AY.520.000814
ORF1ab/nsp639E39DgaAgaC11AY.580.000907
ORF1ab/nsp639E39GgAagGa11AY.60.000041
ORF1ab/nsp639E39delGAA---11AY.600.000938
ORF1ab/nsp639E39delGAA---11AY.660.00107
ORF1ab/nsp639E39GgAagGa11AY.670.000464
ORF1ab/nsp639E39DgaAgaT11AY.7.10.000113
ORF1ab/nsp639E39delGAA---11AY.75.10.00018
ORF1ab/nsp639E39KGaaAaa11AY.770.001127
ORF1ab/nsp639E39delGAA---11AY.90.000068
ORF1ab/nsp639E39XGaaTaa11AY.9.20.000037
ORF1ab/nsp639E39KGaaAaa11B0.000128
ORF1ab/nsp639E39del1gAag-a11B.1.10.000018
ORF1ab/nsp639E39GgAagGa11B.1.10.000018
ORF1ab/nsp639E39QGaaCaa11B.1.1.1420.017544
ORF1ab/nsp639E39KGaaAaa11B.1.1.1590.004673
ORF1ab/nsp639E39KGaaAaa11B.1.1.3370.003597
ORF1ab/nsp639E39EgaAgaG11B.1.1.3470.018182
ORF1ab/nsp639E39KGaaAaa11B.1.1.3720.000689
ORF1ab/nsp639E39XGaaTaa11B.1.1.3720.000689
ORF1ab/nsp639E39KGaaAaa11B.1.1.390.00051
ORF1ab/nsp639E39KGaaAaa11B.1.1.4090.002833
ORF1ab/nsp639E39KGaaAaa11B.1.1.4320.001266
ORF1ab/nsp639E39KGaaAaa11B.1.1.5260.003546
ORF1ab/nsp639E39del1Gaa-aa11B.1.1.70.000001
ORF1ab/nsp639E39DgaAgaC11B.1.1.70.000001
ORF1ab/nsp639E39VgAagTa11B.1.1.70.000001
ORF1ab/nsp639E39KGaaAaa11B.1.1.700.000341
ORF1ab/nsp639E39XGaaTaa11B.1.1180.006711
ORF1ab/nsp639E39XGaaTaa11B.1.1600.000031
ORF1ab/nsp639E39QGaaCaa11B.1.1670.007812
ORF1ab/nsp639E39GgAagGa11B.1.1770.000013
ORF1ab/nsp639E39delGAA---11B.1.1770.000013
ORF1ab/nsp639E39del1gAag-a11B.1.1770.000013
ORF1ab/nsp639E39DgaAgaC11B.1.177.150.000631
ORF1ab/nsp639E39delGAA---11B.1.177.150.000631
ORF1ab/nsp639E39DgaAgaC11B.1.177.310.011494
ORF1ab/nsp639E39EgaAgaG11B.1.177.40.000211
ORF1ab/nsp639E39delGAA---11B.1.177.40.000211
ORF1ab/nsp639E39GgAagGa11B.1.177.400.005155
ORF1ab/nsp639E39DgaAgaC11B.1.177.70.000165
ORF1ab/nsp639E39XGaaTaa11B.1.177.730.000566
ORF1ab/nsp639E39delGAA---11B.1.177.760.002494
ORF1ab/nsp639E39delGAA---11B.1.177.90.001332
ORF1ab/nsp639E39del1gAag-a11B.1.20.000009
ORF1ab/nsp639E39DgaAgaC11B.1.20.000009
ORF1ab/nsp639E39AgAagCa11B.1.2340.000132
ORF1ab/nsp639E39EgaAgaG11B.1.2430.00007
ORF1ab/nsp639E39KGaaAaa11B.1.2430.00007
ORF1ab/nsp639E39DgaAgaC11B.1.2580.000067
ORF1ab/nsp639E39XGaaTaa11B.1.258.170.000104
ORF1ab/nsp639E39delGAA---11B.1.258.30.001675
ORF1ab/nsp639E39KGaaAaa11B.1.2790.000514
ORF1ab/nsp639E39XGaaTaa11B.1.3010.005917
ORF1ab/nsp639E39del1gAag-a11B.1.3360.002439
ORF1ab/nsp639E39delGAA---11B.1.4090.000781
ORF1ab/nsp639E39EgaAgaG11B.1.438.10.000107
ORF1ab/nsp639E39KGaaAaa11B.1.4590.004082
ORF1ab/nsp639E39XGaaTaa11B.1.5260.000024
ORF1ab/nsp639E39GgAagGa11B.1.5610.000397
ORF1ab/nsp639E39XGaaTaa11B.1.5610.000397
ORF1ab/nsp639E39del1gAag-a11B.1.5950.000261
ORF1ab/nsp639E39del1Gaa-aa11B.1.617.20.000004
ORF1ab/nsp639E39del2gAAg--11B.1.617.20.000004
ORF1ab/nsp639E39DgaAgaT11B.1.617.20.000004
ORF1ab/nsp639E39XGaaTaa11B.1.6230.000536
ORF1ab/nsp639E39KGaaAaa11B.100.008264
ORF1ab/nsp639E39delGAA---11B.340.013699
ORF1ab/nsp639E39XGaaTaa11B.400.000364
ORF1ab/nsp639E39LGAaTTa11B.6.60.000889
ORF1ab/nsp639E39EgaAgaG11C.370.000116
ORF1ab/nsp639E39GgAagGa11C.90.030303
ORF1ab/nsp639E39QGaaCaa11D.20.000075
ORF1ab/nsp639E39delGAA---11N.40.004255
ORF1ab/nsp639E39EgaAgaG11P.10.000016
ORF1ab/nsp639E39delGAA---11P.1.150.000232
ORF1ab/nsp639E39delGAA---11Q.10.000126
ORF1ab/nsp639E39KGaaAaa11Q.80.000165