CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 290 & Codon = caT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6290Q290HQ3859HnonsyncaGcaT9129000.98684211840-11842

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6290Q290HcaGcaT900912All0.000172
ORF1ab/nsp6290Q290HcaGcaT8080AY.40.000125
ORF1ab/nsp6290Q290HcaGcaT5860B.1.20.000511
ORF1ab/nsp6290Q290HcaGcaT5858B.1.617.20.000218
ORF1ab/nsp6290Q290HcaGcaT4848B.1.1.70.000043
ORF1ab/nsp6290Q290HcaGcaT4646AY.1020.00122
ORF1ab/nsp6290Q290HcaGcaT4040AY.370.012642
ORF1ab/nsp6290Q290HcaGcaT3939AY.470.001213
ORF1ab/nsp6290Q290HcaGcaT3538AY.430.000155
ORF1ab/nsp6290Q290HcaGcaT3434AY.1030.000211
ORF1ab/nsp6290Q290HcaGcaT3434AY.440.000207
ORF1ab/nsp6290Q290HcaGcaT2424AY.50.000496
ORF1ab/nsp6290Q290HcaGcaT2323B.1.1600.000717
ORF1ab/nsp6290Q290HcaGcaT2222B.1.6210.001947
ORF1ab/nsp6290Q290HcaGcaT1919B.1.4290.000447
ORF1ab/nsp6290Q290HcaGcaT1818AY.1180.001128
ORF1ab/nsp6290Q290HcaGcaT1818AY.30.000179
ORF1ab/nsp6290Q290HcaGcaT1515B.1.1.130.535714
ORF1ab/nsp6290Q290HcaGcaT1515B.1.177.110.025467
ORF1ab/nsp6290Q290HcaGcaT1414B.1.1.4811
ORF1ab/nsp6290Q290HcaGcaT1313AY.420.000523
ORF1ab/nsp6290Q290HcaGcaT1111B.1.4270.000555
ORF1ab/nsp6290Q290HcaGcaT1010AY.250.00006
ORF1ab/nsp6290Q290HcaGcaT1010AY.390.000247
ORF1ab/nsp6290Q290HcaGcaT1010B.10.000092
ORF1ab/nsp6290Q290HcaGcaT1010B.1.1.1640.051546
ORF1ab/nsp6290Q290HcaGcaT1010B.1.177.750.010406
ORF1ab/nsp6290Q290HcaGcaT88AY.98.10.000387
ORF1ab/nsp6290Q290HcaGcaT88B.1.5870.01518
ORF1ab/nsp6290Q290HcaGcaT66AY.7.10.000676
ORF1ab/nsp6290Q290HcaGcaT66AY.880.005305
ORF1ab/nsp6290Q290HcaGcaT66B.1.5960.000523
ORF1ab/nsp6290Q290HcaGcaT55AY.4.20.000108
ORF1ab/nsp6290Q290HcaGcaT55AY.99.20.000461
ORF1ab/nsp6290Q290HcaGcaT55B.1.10.000091
ORF1ab/nsp6290Q290HcaGcaT55B.1.1770.000066
ORF1ab/nsp6290Q290HcaGcaT55B.1.360.00073
ORF1ab/nsp6290Q290HcaGcaT55R.10.00045
ORF1ab/nsp6290Q290HcaGcaT44AY.230.000279
ORF1ab/nsp6290Q290HcaGcaT44B.1.240.10.1
ORF1ab/nsp6290Q290HcaGcaT44B.1.2430.000278
ORF1ab/nsp6290Q290HcaGcaT34D.20.000225
ORF1ab/nsp6290Q290HcaGcaT44P.40.015209
ORF1ab/nsp6290Q290HcaGcaT33A.280.007937
ORF1ab/nsp6290Q290HcaGcaT33AY.39.20.004622
ORF1ab/nsp6290Q290HcaGcaT33B.1.1.10.00098
ORF1ab/nsp6290Q290HcaGcaT33B.1.2210.000213
ORF1ab/nsp6290Q290HcaGcaT33P.10.000047
ORF1ab/nsp6290Q290HcaGcaT22AY.1130.000285
ORF1ab/nsp6290Q290HcaGcaT22AY.1140.000462
ORF1ab/nsp6290Q290HcaGcaT22AY.1160.000574
ORF1ab/nsp6290Q290HcaGcaT22AY.1170.000169
ORF1ab/nsp6290Q290HcaGcaT22AY.1200.000074
ORF1ab/nsp6290Q290HcaGcaT22AY.120.10.000642
ORF1ab/nsp6290Q290HcaGcaT22AY.290.000032
ORF1ab/nsp6290Q290HcaGcaT22AY.3.10.000171
ORF1ab/nsp6290Q290HcaGcaT22AY.300.000791
ORF1ab/nsp6290Q290HcaGcaT22AY.330.000134
ORF1ab/nsp6290Q290HcaGcaT22AY.450.000243
ORF1ab/nsp6290Q290HcaGcaT22AY.5.40.000553
ORF1ab/nsp6290Q290HcaGcaT22AY.590.001059
ORF1ab/nsp6290Q290HcaGcaT12AY.740.000116
ORF1ab/nsp6290Q290HcaGcaT22AY.75.10.000361
ORF1ab/nsp6290Q290HcaGcaT22AY.940.000885
ORF1ab/nsp6290Q290HcaGcaT22AY.980.000158
ORF1ab/nsp6290Q290HcaGcaT22B0.000256
ORF1ab/nsp6290Q290HcaGcaT22B.1.1.3170.000823
ORF1ab/nsp6290Q290HcaGcaT22B.1.1.370.000386
ORF1ab/nsp6290Q290HcaGcaT22B.1.1.5280.009615
ORF1ab/nsp6290Q290HcaGcaT22B.1.2580.000133
ORF1ab/nsp6290Q290HcaGcaT22Q.10.000253
ORF1ab/nsp6290Q290HcaGcaT11AY.1000.000046
ORF1ab/nsp6290Q290HcaGcaT11AY.1070.000466
ORF1ab/nsp6290Q290HcaGcaT11AY.1100.000113
ORF1ab/nsp6290Q290HcaGcaT11AY.1150.005208
ORF1ab/nsp6290Q290HcaGcaT11AY.1190.000035
ORF1ab/nsp6290Q290HcaGcaT11AY.1210.000135
ORF1ab/nsp6290Q290HcaGcaT11AY.200.000039
ORF1ab/nsp6290Q290HcaGcaT11AY.260.000028
ORF1ab/nsp6290Q290HcaGcaT11AY.270.000065
ORF1ab/nsp6290Q290HcaGcaT11AY.29.10.000221
ORF1ab/nsp6290Q290HcaGcaT11AY.320.000532
ORF1ab/nsp6290Q290HcaGcaT11AY.340.000097
ORF1ab/nsp6290Q290HcaGcaT11AY.360.000148
ORF1ab/nsp6290Q290HcaGcaT11AY.4.50.000107
ORF1ab/nsp6290Q290HcaGcaT11AY.460.000104
ORF1ab/nsp6290Q290HcaGcaT11AY.46.60.000072
ORF1ab/nsp6290Q290HcaGcaT11AY.610.000105
ORF1ab/nsp6290Q290HcaGcaT11AY.710.000475
ORF1ab/nsp6290Q290HcaGcaT11AY.870.000833
ORF1ab/nsp6290Q290HcaGcaT11AY.9.10.000084
ORF1ab/nsp6290Q290HcaGcaT11B.1.1.3180.000302
ORF1ab/nsp6290Q290HcaGcaT11B.1.1280.000635
ORF1ab/nsp6290Q290HcaGcaT11B.1.1570.002985
ORF1ab/nsp6290Q290HcaGcaT11B.1.160.260.002421
ORF1ab/nsp6290Q290HcaGcaT11B.1.177.160.000664
ORF1ab/nsp6290Q290HcaGcaT11B.1.177.440.000519
ORF1ab/nsp6290Q290HcaGcaT11B.1.177.630.002703
ORF1ab/nsp6290Q290HcaGcaT11B.1.258.100.011364
ORF1ab/nsp6290Q290HcaGcaT11B.1.3200.001245
ORF1ab/nsp6290Q290HcaGcaT11B.1.3240.001605
ORF1ab/nsp6290Q290HcaGcaT11B.1.351.50.0006
ORF1ab/nsp6290Q290HcaGcaT11B.1.36.290.000517
ORF1ab/nsp6290Q290HcaGcaT11B.1.3690.000285
ORF1ab/nsp6290Q290HcaGcaT11B.1.4530.003236
ORF1ab/nsp6290Q290HcaGcaT11B.1.5610.000397
ORF1ab/nsp6290Q290HcaGcaT11B.1.5640.000426
ORF1ab/nsp6290Q290HcaGcaT11B.1.6370.000073
ORF1ab/nsp6290Q290HcaGcaT11B.30.000831
ORF1ab/nsp6290Q290HcaGcaT11B.450.003831
ORF1ab/nsp6290Q290HcaGcaT11C.350.000774
ORF1ab/nsp6290Q290HcaGcaT11N.50.001767
ORF1ab/nsp6290Q290HcaGcaT11P.20.000187
ORF1ab/nsp6290Q290HcaGcaT11Q.30.000145