CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 290

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6290Q290HQ3859HnonsyncaGcaT9129000.98684211840-11842
ORF1ab/nsp6290Q290HQ3859HnonsyncaGcaC912120.013157911840-11842
ORF1ab/nsp6290Q290QQ3859QsyncaGcaA828828111840-11842
ORF1ab/nsp6290Q290XQ3859XnonsynCagTag28260.92857111840-11842
ORF1ab/nsp6290Q290XQ3859XnonsynCAGTGA2820.071428611840-11842
ORF1ab/nsp6290Q290delQ3859deldelCAG---1313111840-11842
ORF1ab/nsp6290Q290KQ3859KnonsynCagAag77111840-11842
ORF1ab/nsp6290Q290EQ3859EnonsynCagGag44111840-11842
ORF1ab/nsp6290Q290RQ3859RnonsyncAgcGg44111840-11842
ORF1ab/nsp6290Q290YQ3859YnonsynCaGTaT22111840-11842
ORF1ab/nsp6290Q290del1Q3859del1delcAgc-g210.511840-11842
ORF1ab/nsp6290Q290del1Q3859del1delCag-ag210.511840-11842
ORF1ab/nsp6290Q290LQ3859LnonsyncAGcTC11111840-11842
ORF1ab/nsp6290Q290VQ3859VnonsynCAgGTg11111840-11842
ORF1ab/nsp6290Q290GQ3859GnonsynCAgGGg11111840-11842
ORF1ab/nsp6290Q290TQ3859TnonsynCAgACg11111840-11842

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6290Q290HcaGcaT900912All0.000172
ORF1ab/nsp6290Q290HcaGcaC12912All0.000002
ORF1ab/nsp6290Q290QcaGcaA828828All0.000158
ORF1ab/nsp6290Q290QcaGcaA477477B.1.2360.979466
ORF1ab/nsp6290Q290HcaGcaT8080AY.40.000125
ORF1ab/nsp6290Q290QcaGcaA6363AY.40.000098
ORF1ab/nsp6290Q290HcaGcaT5860B.1.20.000511
ORF1ab/nsp6290Q290HcaGcaC260B.1.20.000018
ORF1ab/nsp6290Q290HcaGcaT5858B.1.617.20.000218
ORF1ab/nsp6290Q290HcaGcaT4848B.1.1.70.000043
ORF1ab/nsp6290Q290HcaGcaT4646AY.1020.00122
ORF1ab/nsp6290Q290HcaGcaT4040AY.370.012642
ORF1ab/nsp6290Q290HcaGcaT3939AY.470.001213
ORF1ab/nsp6290Q290HcaGcaT3538AY.430.000155
ORF1ab/nsp6290Q290HcaGcaC338AY.430.000013
ORF1ab/nsp6290Q290HcaGcaT3434AY.1030.000211
ORF1ab/nsp6290Q290HcaGcaT3434AY.440.000207
ORF1ab/nsp6290Q290QcaGcaA3131AY.430.000137
ORF1ab/nsp6290Q290QcaGcaA3131B.1.1180.208054
ORF1ab/nsp6290Q290QcaGcaA3030B.1.1.70.000027
ORF1ab/nsp6290Q290XCagTag2628All0.000005
ORF1ab/nsp6290Q290XCAGTGA228All0
ORF1ab/nsp6290Q290QcaGcaA2525B.1.1580.595238
ORF1ab/nsp6290Q290HcaGcaT2424AY.50.000496
ORF1ab/nsp6290Q290HcaGcaT2323B.1.1600.000717
ORF1ab/nsp6290Q290HcaGcaT2222B.1.6210.001947
ORF1ab/nsp6290Q290QcaGcaA2020B.1.10.000363
ORF1ab/nsp6290Q290HcaGcaT1919B.1.4290.000447
ORF1ab/nsp6290Q290HcaGcaT1818AY.1180.001128
ORF1ab/nsp6290Q290HcaGcaT1818AY.30.000179
ORF1ab/nsp6290Q290HcaGcaT1515B.1.1.130.535714
ORF1ab/nsp6290Q290HcaGcaT1515B.1.177.110.025467
ORF1ab/nsp6290Q290HcaGcaT1414B.1.1.4811
ORF1ab/nsp6290Q290QcaGcaA1414P.1.40.013672
ORF1ab/nsp6290Q290delCAG---1313All0.000002
ORF1ab/nsp6290Q290HcaGcaT1313AY.420.000523
ORF1ab/nsp6290Q290QcaGcaA1111B.10.000101
ORF1ab/nsp6290Q290HcaGcaT1111B.1.4270.000555
ORF1ab/nsp6290Q290QcaGcaA1111B.1.617.20.000041
ORF1ab/nsp6290Q290HcaGcaT1010AY.250.00006
ORF1ab/nsp6290Q290HcaGcaT1010AY.390.000247
ORF1ab/nsp6290Q290HcaGcaT1010B.10.000092
ORF1ab/nsp6290Q290HcaGcaT1010B.1.1.1640.051546
ORF1ab/nsp6290Q290HcaGcaT1010B.1.177.750.010406
ORF1ab/nsp6290Q290QcaGcaA99AZ.10.007806
ORF1ab/nsp6290Q290QcaGcaA88AY.1030.00005
ORF1ab/nsp6290Q290HcaGcaT88AY.98.10.000387
ORF1ab/nsp6290Q290HcaGcaT88B.1.5870.01518
ORF1ab/nsp6290Q290KCagAag77All0.000001
ORF1ab/nsp6290Q290QcaGcaA77AY.1100.000789
ORF1ab/nsp6290Q290QcaGcaA77AY.250.000042
ORF1ab/nsp6290Q290QcaGcaA77AY.440.000043
ORF1ab/nsp6290Q290QcaGcaA77B.1.20.000062
ORF1ab/nsp6290Q290QcaGcaA66AY.1210.000812
ORF1ab/nsp6290Q290HcaGcaT66AY.7.10.000676
ORF1ab/nsp6290Q290HcaGcaT66AY.880.005305
ORF1ab/nsp6290Q290QcaGcaA66B.1.177.430.008863
ORF1ab/nsp6290Q290HcaGcaT66B.1.5960.000523
ORF1ab/nsp6290Q290HcaGcaT55AY.4.20.000108
ORF1ab/nsp6290Q290HcaGcaT55AY.99.20.000461
ORF1ab/nsp6290Q290HcaGcaT55B.1.10.000091
ORF1ab/nsp6290Q290HcaGcaT55B.1.1770.000066
ORF1ab/nsp6290Q290HcaGcaC55B.1.177.570.001405
ORF1ab/nsp6290Q290HcaGcaT55B.1.360.00073
ORF1ab/nsp6290Q290QcaGcaA55B.1.5960.000436
ORF1ab/nsp6290Q290HcaGcaT55R.10.00045
ORF1ab/nsp6290Q290RcAgcGg44All0.000001
ORF1ab/nsp6290Q290ECagGag44All0.000001
ORF1ab/nsp6290Q290HcaGcaT44AY.230.000279
ORF1ab/nsp6290Q290XCagTag44B.1.1.70.000004
ORF1ab/nsp6290Q290HcaGcaT44B.1.240.10.1
ORF1ab/nsp6290Q290HcaGcaT44B.1.2430.000278
ORF1ab/nsp6290Q290XCagTag44D.20.0003
ORF1ab/nsp6290Q290HcaGcaT34D.20.000225
ORF1ab/nsp6290Q290HcaGcaC14D.20.000075
ORF1ab/nsp6290Q290QcaGcaA44P.10.000063
ORF1ab/nsp6290Q290HcaGcaT44P.40.015209
ORF1ab/nsp6290Q290HcaGcaT33A.280.007937
ORF1ab/nsp6290Q290QcaGcaA33AY.160.001139
ORF1ab/nsp6290Q290HcaGcaT33AY.39.20.004622
ORF1ab/nsp6290Q290delCAG---33B.10.000027
ORF1ab/nsp6290Q290HcaGcaT33B.1.1.10.00098
ORF1ab/nsp6290Q290QcaGcaA33B.1.1.460.0131
ORF1ab/nsp6290Q290XCagTag23B.1.20.000018
ORF1ab/nsp6290Q290XCAGTGA13B.1.20.000009
ORF1ab/nsp6290Q290HcaGcaT33B.1.2210.000213
ORF1ab/nsp6290Q290HcaGcaT33P.10.000047
ORF1ab/nsp6290Q290KCagAag220.111111
ORF1ab/nsp6290Q290YCaGTaT220.111111
ORF1ab/nsp6290Q290YCaGTaT22All0
ORF1ab/nsp6290Q290del1cAgc-g12All0
ORF1ab/nsp6290Q290del1Cag-ag12All0
ORF1ab/nsp6290Q290HcaGcaT22AY.1130.000285
ORF1ab/nsp6290Q290HcaGcaT22AY.1140.000462
ORF1ab/nsp6290Q290HcaGcaT22AY.1160.000574
ORF1ab/nsp6290Q290HcaGcaT22AY.1170.000169
ORF1ab/nsp6290Q290QcaGcaA22AY.1190.000071
ORF1ab/nsp6290Q290HcaGcaT22AY.1200.000074
ORF1ab/nsp6290Q290HcaGcaT22AY.120.10.000642
ORF1ab/nsp6290Q290QcaGcaA22AY.230.000139
ORF1ab/nsp6290Q290ECagGag22AY.250.000012
ORF1ab/nsp6290Q290HcaGcaT22AY.290.000032
ORF1ab/nsp6290Q290HcaGcaT22AY.3.10.000171
ORF1ab/nsp6290Q290HcaGcaT22AY.300.000791
ORF1ab/nsp6290Q290HcaGcaT22AY.330.000134
ORF1ab/nsp6290Q290QcaGcaA22AY.390.000049
ORF1ab/nsp6290Q290XCagTag12AY.440.000006
ORF1ab/nsp6290Q290XCAGTGA12AY.440.000006
ORF1ab/nsp6290Q290HcaGcaT22AY.450.000243
ORF1ab/nsp6290Q290QcaGcaA22AY.50.000041
ORF1ab/nsp6290Q290HcaGcaT22AY.5.40.000553
ORF1ab/nsp6290Q290HcaGcaT22AY.590.001059
ORF1ab/nsp6290Q290HcaGcaT12AY.740.000116
ORF1ab/nsp6290Q290HcaGcaC12AY.740.000116
ORF1ab/nsp6290Q290HcaGcaT22AY.75.10.000361
ORF1ab/nsp6290Q290QcaGcaA22AY.9.20.000073
ORF1ab/nsp6290Q290HcaGcaT22AY.940.000885
ORF1ab/nsp6290Q290HcaGcaT22AY.980.000158
ORF1ab/nsp6290Q290HcaGcaT22B0.000256
ORF1ab/nsp6290Q290XCagTag22B.10.000018
ORF1ab/nsp6290Q290HcaGcaT22B.1.1.3170.000823
ORF1ab/nsp6290Q290HcaGcaT22B.1.1.370.000386
ORF1ab/nsp6290Q290HcaGcaT22B.1.1.5280.009615
ORF1ab/nsp6290Q290KCagAag22B.1.1.70.000002
ORF1ab/nsp6290Q290XCagTag22B.1.1770.000026
ORF1ab/nsp6290Q290QcaGcaA22B.1.1770.000026
ORF1ab/nsp6290Q290QcaGcaA22B.1.2210.000142
ORF1ab/nsp6290Q290HcaGcaT22B.1.2580.000133
ORF1ab/nsp6290Q290QcaGcaA22B.1.351.50.001199
ORF1ab/nsp6290Q290QcaGcaA22B.1.36.390.004435
ORF1ab/nsp6290Q290QcaGcaA22B.1.617.10.000258
ORF1ab/nsp6290Q290HcaGcaT22Q.10.000253
ORF1ab/nsp6290Q290delCAG---11A0.000387
ORF1ab/nsp6290Q290GCAgGGg11All0
ORF1ab/nsp6290Q290TCAgACg11All0
ORF1ab/nsp6290Q290VCAgGTg11All0
ORF1ab/nsp6290Q290LcAGcTC11All0
ORF1ab/nsp6290Q290HcaGcaT11AY.1000.000046
ORF1ab/nsp6290Q290HcaGcaT11AY.1070.000466
ORF1ab/nsp6290Q290HcaGcaT11AY.1100.000113
ORF1ab/nsp6290Q290HcaGcaT11AY.1150.005208
ORF1ab/nsp6290Q290HcaGcaT11AY.1190.000035
ORF1ab/nsp6290Q290ECagGag11AY.1190.000035
ORF1ab/nsp6290Q290HcaGcaT11AY.1210.000135
ORF1ab/nsp6290Q290HcaGcaT11AY.200.000039
ORF1ab/nsp6290Q290delCAG---11AY.250.000006
ORF1ab/nsp6290Q290HcaGcaT11AY.260.000028
ORF1ab/nsp6290Q290HcaGcaT11AY.270.000065
ORF1ab/nsp6290Q290HcaGcaT11AY.29.10.000221
ORF1ab/nsp6290Q290QcaGcaA11AY.30.00001
ORF1ab/nsp6290Q290HcaGcaT11AY.320.000532
ORF1ab/nsp6290Q290HcaGcaT11AY.340.000097
ORF1ab/nsp6290Q290HcaGcaT11AY.360.000148
ORF1ab/nsp6290Q290GCAgGGg11AY.39.10.00004
ORF1ab/nsp6290Q290HcaGcaT11AY.4.50.000107
ORF1ab/nsp6290Q290delCAG---11AY.4.50.000107
ORF1ab/nsp6290Q290RcAgcGg11AY.440.000006
ORF1ab/nsp6290Q290QcaGcaA11AY.450.000122
ORF1ab/nsp6290Q290HcaGcaT11AY.460.000104
ORF1ab/nsp6290Q290QcaGcaA11AY.46.20.000635
ORF1ab/nsp6290Q290HcaGcaT11AY.46.60.000072
ORF1ab/nsp6290Q290QcaGcaA11AY.540.000095
ORF1ab/nsp6290Q290QcaGcaA11AY.550.000917
ORF1ab/nsp6290Q290HcaGcaT11AY.610.000105
ORF1ab/nsp6290Q290delCAG---11AY.7.20.000559
ORF1ab/nsp6290Q290HcaGcaT11AY.710.000475
ORF1ab/nsp6290Q290QcaGcaA11AY.850.000427
ORF1ab/nsp6290Q290HcaGcaT11AY.870.000833
ORF1ab/nsp6290Q290XCagTag11AY.90.000068
ORF1ab/nsp6290Q290HcaGcaT11AY.9.10.000084
ORF1ab/nsp6290Q290QcaGcaA11AY.98.10.000048
ORF1ab/nsp6290Q290RcAgcGg11B.10.000009
ORF1ab/nsp6290Q290KCagAag11B.10.000009
ORF1ab/nsp6290Q290delCAG---11B.1.10.000018
ORF1ab/nsp6290Q290HcaGcaT11B.1.1.3180.000302
ORF1ab/nsp6290Q290QcaGcaA11B.1.1.5190.00004
ORF1ab/nsp6290Q290delCAG---11B.1.1.70.000001
ORF1ab/nsp6290Q290TCAgACg11B.1.1.70.000001
ORF1ab/nsp6290Q290del1Cag-ag11B.1.1.70.000001
ORF1ab/nsp6290Q290HcaGcaT11B.1.1280.000635
ORF1ab/nsp6290Q290HcaGcaT11B.1.1570.002985
ORF1ab/nsp6290Q290QcaGcaA11B.1.1600.000031
ORF1ab/nsp6290Q290XCagTag11B.1.1600.000031
ORF1ab/nsp6290Q290HcaGcaT11B.1.160.260.002421
ORF1ab/nsp6290Q290HcaGcaT11B.1.177.160.000664
ORF1ab/nsp6290Q290QcaGcaA11B.1.177.230.003236
ORF1ab/nsp6290Q290HcaGcaT11B.1.177.440.000519
ORF1ab/nsp6290Q290HcaGcaT11B.1.177.630.002703
ORF1ab/nsp6290Q290delCAG---11B.1.177.730.000566
ORF1ab/nsp6290Q290RcAgcGg11B.1.177.820.000477
ORF1ab/nsp6290Q290KCagAag11B.1.2580.000067
ORF1ab/nsp6290Q290QcaGcaA11B.1.2580.000067
ORF1ab/nsp6290Q290HcaGcaT11B.1.258.100.011364
ORF1ab/nsp6290Q290XCagTag11B.1.3110.000275
ORF1ab/nsp6290Q290HcaGcaT11B.1.3200.001245
ORF1ab/nsp6290Q290HcaGcaT11B.1.3240.001605
ORF1ab/nsp6290Q290XCagTag11B.1.3380.008621
ORF1ab/nsp6290Q290RcAgcGg11B.1.3510.00003
ORF1ab/nsp6290Q290delCAG---11B.1.3510.00003
ORF1ab/nsp6290Q290QcaGcaA11B.1.3510.00003
ORF1ab/nsp6290Q290HcaGcaT11B.1.351.50.0006
ORF1ab/nsp6290Q290HcaGcaT11B.1.36.290.000517
ORF1ab/nsp6290Q290XCagTag11B.1.36.290.000517
ORF1ab/nsp6290Q290QcaGcaA11B.1.36.310.001751
ORF1ab/nsp6290Q290QcaGcaA11B.1.3670.000792
ORF1ab/nsp6290Q290HcaGcaT11B.1.3690.000285
ORF1ab/nsp6290Q290XCagTag11B.1.3690.000285
ORF1ab/nsp6290Q290QcaGcaA11B.1.3690.000285
ORF1ab/nsp6290Q290XCagTag11B.1.3960.000706
ORF1ab/nsp6290Q290QcaGcaA11B.1.4040.001302
ORF1ab/nsp6290Q290QcaGcaA11B.1.4290.000024
ORF1ab/nsp6290Q290HcaGcaT11B.1.4530.003236
ORF1ab/nsp6290Q290QcaGcaA11B.1.466.20.000391
ORF1ab/nsp6290Q290XCagTag11B.1.4850.014925
ORF1ab/nsp6290Q290XCagTag11B.1.5210.004975
ORF1ab/nsp6290Q290HcaGcaT11B.1.5610.000397
ORF1ab/nsp6290Q290HcaGcaT11B.1.5640.000426
ORF1ab/nsp6290Q290XCagTag11B.1.5900.004545
ORF1ab/nsp6290Q290QcaGcaA11B.1.5950.000261
ORF1ab/nsp6290Q290LcAGcTC11B.1.617.20.000004
ORF1ab/nsp6290Q290delCAG---11B.1.617.20.000004
ORF1ab/nsp6290Q290QcaGcaA11B.1.6200.000946
ORF1ab/nsp6290Q290del1cAgc-g11B.1.6370.000073
ORF1ab/nsp6290Q290HcaGcaT11B.1.6370.000073
ORF1ab/nsp6290Q290XCagTag11B.1.6370.000073
ORF1ab/nsp6290Q290HcaGcaT11B.30.000831
ORF1ab/nsp6290Q290KCagAag11B.400.000364
ORF1ab/nsp6290Q290HcaGcaT11B.450.003831
ORF1ab/nsp6290Q290HcaGcaT11C.350.000774
ORF1ab/nsp6290Q290QcaGcaA11C.360.000911
ORF1ab/nsp6290Q290delCAG---11N.40.004255
ORF1ab/nsp6290Q290HcaGcaT11N.50.001767
ORF1ab/nsp6290Q290VCAgGTg11P.10.000016
ORF1ab/nsp6290Q290ECagGag11P.10.000016
ORF1ab/nsp6290Q290HcaGcaT11P.20.000187
ORF1ab/nsp6290Q290QcaGcaA11P.20.000187
ORF1ab/nsp6290Q290HcaGcaT11Q.30.000145
ORF1ab/nsp6290Q290QcaGcaA11Q.80.000165