CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 290 | Q290H | Q3859H | nonsyn | caG | caT | 912 | 900 | 0.986842 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290H | Q3859H | nonsyn | caG | caC | 912 | 12 | 0.0131579 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290Q | Q3859Q | syn | caG | caA | 828 | 828 | 1 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290X | Q3859X | nonsyn | Cag | Tag | 28 | 26 | 0.928571 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290X | Q3859X | nonsyn | CAG | TGA | 28 | 2 | 0.0714286 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290del | Q3859del | del | CAG | --- | 13 | 13 | 1 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290K | Q3859K | nonsyn | Cag | Aag | 7 | 7 | 1 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290E | Q3859E | nonsyn | Cag | Gag | 4 | 4 | 1 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290R | Q3859R | nonsyn | cAg | cGg | 4 | 4 | 1 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290Y | Q3859Y | nonsyn | CaG | TaT | 2 | 2 | 1 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290del1 | Q3859del1 | del | cAg | c-g | 2 | 1 | 0.5 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290del1 | Q3859del1 | del | Cag | -ag | 2 | 1 | 0.5 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290L | Q3859L | nonsyn | cAG | cTC | 1 | 1 | 1 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290V | Q3859V | nonsyn | CAg | GTg | 1 | 1 | 1 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290G | Q3859G | nonsyn | CAg | GGg | 1 | 1 | 1 | 11840-11842 |
ORF1ab/nsp6 | 290 | Q290T | Q3859T | nonsyn | CAg | ACg | 1 | 1 | 1 | 11840-11842 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 900 | 912 | All | 0.000172 |
ORF1ab/nsp6 | 290 | Q290H | caG | caC | 12 | 912 | All | 0.000002 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 828 | 828 | All | 0.000158 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 477 | 477 | B.1.236 | 0.979466 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 80 | 80 | AY.4 | 0.000125 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 63 | 63 | AY.4 | 0.000098 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 58 | 60 | B.1.2 | 0.000511 |
ORF1ab/nsp6 | 290 | Q290H | caG | caC | 2 | 60 | B.1.2 | 0.000018 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 58 | 58 | B.1.617.2 | 0.000218 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 48 | 48 | B.1.1.7 | 0.000043 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 46 | 46 | AY.102 | 0.00122 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 40 | 40 | AY.37 | 0.012642 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 39 | 39 | AY.47 | 0.001213 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 35 | 38 | AY.43 | 0.000155 |
ORF1ab/nsp6 | 290 | Q290H | caG | caC | 3 | 38 | AY.43 | 0.000013 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 34 | 34 | AY.103 | 0.000211 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 34 | 34 | AY.44 | 0.000207 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 31 | 31 | AY.43 | 0.000137 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 31 | 31 | B.1.118 | 0.208054 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 30 | 30 | B.1.1.7 | 0.000027 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 26 | 28 | All | 0.000005 |
ORF1ab/nsp6 | 290 | Q290X | CAG | TGA | 2 | 28 | All | 0 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 25 | 25 | B.1.158 | 0.595238 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 24 | 24 | AY.5 | 0.000496 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 23 | 23 | B.1.160 | 0.000717 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 22 | 22 | B.1.621 | 0.001947 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 20 | 20 | B.1.1 | 0.000363 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 19 | 19 | B.1.429 | 0.000447 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 18 | 18 | AY.118 | 0.001128 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 18 | 18 | AY.3 | 0.000179 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 15 | 15 | B.1.1.13 | 0.535714 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 15 | 15 | B.1.177.11 | 0.025467 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 14 | 14 | B.1.1.481 | 1 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 14 | 14 | P.1.4 | 0.013672 |
ORF1ab/nsp6 | 290 | Q290del | CAG | --- | 13 | 13 | All | 0.000002 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 13 | 13 | AY.42 | 0.000523 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 11 | 11 | B.1.427 | 0.000555 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 10 | 10 | AY.39 | 0.000247 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 10 | 10 | B.1.1.164 | 0.051546 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 10 | 10 | B.1.177.75 | 0.010406 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 9 | 9 | AZ.1 | 0.007806 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 8 | 8 | B.1.587 | 0.01518 |
ORF1ab/nsp6 | 290 | Q290K | Cag | Aag | 7 | 7 | All | 0.000001 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 7 | 7 | AY.110 | 0.000789 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 6 | 6 | AY.7.1 | 0.000676 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 6 | 6 | AY.88 | 0.005305 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 6 | 6 | B.1.177.43 | 0.008863 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp6 | 290 | Q290H | caG | caC | 5 | 5 | B.1.177.57 | 0.001405 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp6 | 290 | Q290R | cAg | cGg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp6 | 290 | Q290E | Cag | Gag | 4 | 4 | All | 0.000001 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 4 | 4 | B.1.240.1 | 0.1 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 3 | 4 | D.2 | 0.000225 |
ORF1ab/nsp6 | 290 | Q290H | caG | caC | 1 | 4 | D.2 | 0.000075 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 4 | 4 | P.4 | 0.015209 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 3 | 3 | A.28 | 0.007937 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 3 | 3 | AY.39.2 | 0.004622 |
ORF1ab/nsp6 | 290 | Q290del | CAG | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 3 | 3 | B.1.1.46 | 0.0131 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp6 | 290 | Q290X | CAG | TGA | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp6 | 290 | Q290K | Cag | Aag | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 290 | Q290Y | CaG | TaT | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 290 | Q290Y | CaG | TaT | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 290 | Q290del1 | cAg | c-g | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 290 | Q290del1 | Cag | -ag | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp6 | 290 | Q290E | Cag | Gag | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 290 | Q290X | CAG | TGA | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 2 | AY.74 | 0.000116 |
ORF1ab/nsp6 | 290 | Q290H | caG | caC | 1 | 2 | AY.74 | 0.000116 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp6 | 290 | Q290K | Cag | Aag | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 2 | 2 | B.1.36.39 | 0.004435 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp6 | 290 | Q290del | CAG | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 290 | Q290G | CAg | GGg | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 290 | Q290T | CAg | ACg | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 290 | Q290V | CAg | GTg | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 290 | Q290L | cAG | cTC | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp6 | 290 | Q290E | Cag | Gag | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp6 | 290 | Q290del | CAG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp6 | 290 | Q290G | CAg | GGg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 290 | Q290del | CAG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 290 | Q290R | cAg | cGg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp6 | 290 | Q290del | CAG | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 290 | Q290R | cAg | cGg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 290 | Q290K | Cag | Aag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 290 | Q290del | CAG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp6 | 290 | Q290del | CAG | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 290 | Q290T | CAg | ACg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 290 | Q290del1 | Cag | -ag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp6 | 290 | Q290del | CAG | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp6 | 290 | Q290R | cAg | cGg | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp6 | 290 | Q290K | Cag | Aag | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp6 | 290 | Q290R | cAg | cGg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 290 | Q290del | CAG | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 1 | 1 | B.1.485 | 0.014925 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 290 | Q290L | cAG | cTC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 290 | Q290del | CAG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp6 | 290 | Q290del1 | cAg | c-g | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 290 | Q290X | Cag | Tag | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp6 | 290 | Q290K | Cag | Aag | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp6 | 290 | Q290del | CAG | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp6 | 290 | Q290V | CAg | GTg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 290 | Q290E | Cag | Gag | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp6 | 290 | Q290H | caG | caT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp6 | 290 | Q290Q | caG | caA | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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