CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 289 | V289L | V3858L | nonsyn | Gta | Tta | 749 | 743 | 0.991989 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289L | V3858L | nonsyn | Gta | Cta | 749 | 6 | 0.00801068 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289V | V3858V | syn | gtA | gtG | 539 | 530 | 0.983302 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289V | V3858V | syn | gtA | gtT | 539 | 6 | 0.0111317 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289V | V3858V | syn | gtA | gtC | 539 | 3 | 0.00556586 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289I | V3858I | nonsyn | Gta | Ata | 335 | 335 | 1 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289del | V3858del | del | GTA | --- | 12 | 12 | 1 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289A | V3858A | nonsyn | gTa | gCa | 9 | 8 | 0.888889 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289A | V3858A | nonsyn | gTA | gCC | 9 | 1 | 0.111111 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289G | V3858G | nonsyn | gTa | gGa | 5 | 4 | 0.8 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289G | V3858G | nonsyn | gTA | gGT | 5 | 1 | 0.2 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289del1 | V3858del1 | del | gtA | gt- | 4 | 2 | 0.5 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289del1 | V3858del1 | del | Gta | -ta | 4 | 1 | 0.25 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289del1 | V3858del1 | del | GTa | -Na | 4 | 1 | 0.25 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289E | V3858E | nonsyn | gTa | gAa | 2 | 2 | 1 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289D | V3858D | nonsyn | gTA | gAC | 1 | 1 | 1 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289Y | V3858Y | nonsyn | GTA | TAC | 1 | 1 | 1 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289del2 | V3858del2 | del | GTa | --a | 1 | 1 | 1 | 11837-11839 |
ORF1ab/nsp6 | 289 | V289Q | V3858Q | nonsyn | GTa | CAa | 1 | 1 | 1 | 11837-11839 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 743 | 749 | All | 0.000142 |
ORF1ab/nsp6 | 289 | V289L | Gta | Cta | 6 | 749 | All | 0.000001 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 530 | 539 | All | 0.000101 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtT | 6 | 539 | All | 0.000001 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtC | 3 | 539 | All | 0.000001 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 335 | 335 | All | 0.000064 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 215 | 215 | B.1.429 | 0.005059 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 210 | 212 | B.1.1.7 | 0.000188 |
ORF1ab/nsp6 | 289 | V289L | Gta | Cta | 2 | 212 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 124 | 124 | AY.4 | 0.000193 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 116 | 116 | B.1.1.5 | 0.966667 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 110 | 110 | AY.3 | 0.001094 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 45 | 46 | B.1.1.7 | 0.00004 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtC | 1 | 46 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 41 | 43 | AY.103 | 0.000255 |
ORF1ab/nsp6 | 289 | V289L | Gta | Cta | 2 | 43 | AY.103 | 0.000012 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 42 | 42 | AY.4 | 0.000065 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 29 | 29 | B.1.2 | 0.000255 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 28 | 28 | AY.44 | 0.00017 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 27 | 27 | B.1.617.2 | 0.000102 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 26 | 26 | AY.117 | 0.002197 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 23 | 23 | B.1.357 | 0.219048 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 21 | 22 | AY.25 | 0.000126 |
ORF1ab/nsp6 | 289 | V289L | Gta | Cta | 1 | 22 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 20 | 20 | AY.3 | 0.000199 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 19 | 19 | B.1.429 | 0.000447 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 18 | 18 | AY.44 | 0.00011 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 15 | 18 | B.1 | 0.000137 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtT | 2 | 18 | B.1 | 0.000018 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtC | 1 | 18 | B.1 | 0.000009 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 16 | 16 | AY.43 | 0.000071 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 15 | 15 | AY.100 | 0.00069 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 14 | 14 | B.1.1.220 | 0.026022 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp6 | 289 | V289del | GTA | --- | 12 | 12 | All | 0.000002 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 11 | 11 | B.1.422 | 0.008936 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 10 | 10 | AY.2 | 0.003561 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 9 | 10 | AY.4 | 0.000014 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtT | 1 | 10 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp6 | 289 | V289A | gTa | gCa | 8 | 9 | All | 0.000002 |
ORF1ab/nsp6 | 289 | V289A | gTA | gCC | 1 | 9 | All | 0 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 7 | 7 | B.1.1.301 | 0.008255 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 6 | 6 | AY.110 | 0.000676 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 6 | 6 | AY.72 | 0.008163 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp6 | 289 | V289G | gTa | gGa | 4 | 5 | All | 0.000001 |
ORF1ab/nsp6 | 289 | V289G | gTA | gGT | 1 | 5 | All | 0 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 5 | 5 | B.1.177.7 | 0.000824 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp6 | 289 | V289del1 | gtA | gt- | 2 | 4 | All | 0 |
ORF1ab/nsp6 | 289 | V289del1 | Gta | -ta | 1 | 4 | All | 0 |
ORF1ab/nsp6 | 289 | V289del1 | GTa | -Na | 1 | 4 | All | 0 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 4 | 4 | C.35 | 0.003096 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp6 | 289 | V289del | GTA | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 3 | 3 | B.1.1.515 | 0.06 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 3 | 3 | B.1.177.41 | 0.0075 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp6 | 289 | V289G | gTa | gGa | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | A | 0.000774 |
ORF1ab/nsp6 | 289 | V289E | gTa | gAa | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtC | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | B | 0.000256 |
ORF1ab/nsp6 | 289 | V289G | gTA | gGT | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp6 | 289 | V289G | gTa | gGa | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp6 | 289 | V289A | gTa | gCa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 2 | 2 | B.1.36.35 | 0.005208 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp6 | 289 | V289del | GTA | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp6 | 289 | V289Q | GTa | CAa | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 289 | V289D | gTA | gAC | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 289 | V289Y | GTA | TAC | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 289 | V289del2 | GTa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp6 | 289 | V289A | gTa | gCa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 289 | V289del | GTA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 289 | V289del | GTA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 289 | V289A | gTa | gCa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 289 | V289del1 | GTa | -Na | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 289 | V289A | gTa | gCa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp6 | 289 | V289A | gTa | gCa | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp6 | 289 | V289del | GTA | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 289 | V289D | gTA | gAC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 289 | V289Y | GTA | TAC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 289 | V289E | gTa | gAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 289 | V289A | gTa | gCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 289 | V289Q | GTa | CAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 289 | V289del | GTA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 289 | V289del1 | Gta | -ta | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.1.230 | 0.009174 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.1.324 | 0.052632 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp6 | 289 | V289del2 | GTa | --a | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 289 | V289G | gTa | gGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 289 | V289E | gTa | gAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 289 | V289del1 | gtA | gt- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp6 | 289 | V289del | GTA | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp6 | 289 | V289A | gTA | gCC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp6 | 289 | V289del | GTA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp6 | 289 | V289L | Gta | Cta | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 289 | V289del1 | gtA | gt- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 289 | V289A | gTa | gCa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 289 | V289del | GTA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp6 | 289 | V289del | GTA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp6 | 289 | V289I | Gta | Ata | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp6 | 289 | V289L | Gta | Tta | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp6 | 289 | V289V | gtA | gtG | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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