CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 287 | A287A | A3856A | syn | gcC | gcT | 2488 | 2048 | 0.823151 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287A | A3856A | syn | gcC | gcA | 2488 | 438 | 0.176045 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287A | A3856A | syn | gcC | gcG | 2488 | 2 | 0.000803859 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287V | A3856V | nonsyn | gCc | gTc | 213 | 213 | 1 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287T | A3856T | nonsyn | Gcc | Acc | 75 | 74 | 0.986667 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287T | A3856T | nonsyn | GcC | AcA | 75 | 1 | 0.0133333 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287S | A3856S | nonsyn | Gcc | Tcc | 53 | 50 | 0.943396 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287S | A3856S | nonsyn | GCC | AGT | 53 | 2 | 0.0377358 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287S | A3856S | nonsyn | GcC | TcA | 53 | 1 | 0.0188679 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287del | A3856del | del | GCC | --- | 12 | 12 | 1 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287D | A3856D | nonsyn | gCc | gAc | 4 | 3 | 0.75 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287D | A3856D | nonsyn | gCC | gAT | 4 | 1 | 0.25 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287G | A3856G | nonsyn | gCc | gGc | 3 | 3 | 1 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287P | A3856P | nonsyn | Gcc | Ccc | 2 | 2 | 1 | 11831-11833 |
ORF1ab/nsp6 | 287 | A287del1 | A3856del1 | del | gCc | g-c | 1 | 1 | 1 | 11831-11833 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2048 | 2488 | All | 0.000392 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 438 | 2488 | All | 0.000084 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcG | 2 | 2488 | All | 0 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 398 | 793 | B.1.1.7 | 0.000356 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 395 | 793 | B.1.1.7 | 0.000354 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 213 | 213 | All | 0.000041 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 176 | 177 | AY.43 | 0.00078 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 1 | 177 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 145 | 149 | AY.4 | 0.000226 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 4 | 149 | AY.4 | 0.000006 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 126 | 126 | B.1.1.351 | 0.351955 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 119 | 121 | B.1.617.2 | 0.000448 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcG | 1 | 121 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 1 | 121 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 108 | 108 | B.1.192 | 1 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 98 | 99 | AY.44 | 0.000597 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 1 | 99 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 74 | 75 | All | 0.000014 |
ORF1ab/nsp6 | 287 | A287T | GcC | AcA | 1 | 75 | All | 0 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 68 | 68 | B.1.429 | 0.0016 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 55 | 55 | B.1.177 | 0.000724 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 50 | 53 | All | 0.00001 |
ORF1ab/nsp6 | 287 | A287S | GCC | AGT | 2 | 53 | All | 0 |
ORF1ab/nsp6 | 287 | A287S | GcC | TcA | 1 | 53 | All | 0 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 42 | 42 | B.1.3 | 0.109948 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 37 | 38 | AY.5 | 0.000764 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 1 | 38 | AY.5 | 0.000021 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 27 | 33 | AY.103 | 0.000168 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 6 | 33 | AY.103 | 0.000037 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 32 | 32 | AY.4 | 0.00005 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 31 | 31 | B.1.2 | 0.000273 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 30 | 30 | AY.107 | 0.013979 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 28 | 28 | AY.3 | 0.000278 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 24 | 28 | B.1 | 0.00022 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 4 | 28 | B.1 | 0.000037 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 28 | 28 | B.1.1 | 0.000508 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 27 | 27 | B.1.243 | 0.001879 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 25 | 25 | B.15 | 0.438596 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 13 | 23 | AY.25 | 0.000078 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 10 | 23 | AY.25 | 0.00006 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 21 | 21 | AY.99.1 | 0.032609 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 19 | 19 | AY.39 | 0.00047 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 19 | 19 | B.1.177.21 | 0.001453 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 17 | 18 | AY.26 | 0.000481 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 1 | 18 | AY.26 | 0.000028 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 18 | 18 | B.1.637 | 0.001315 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 17 | 17 | AY.72 | 0.023129 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 15 | 15 | P.1 | 0.000236 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 14 | 14 | B.1.1.277 | 0.010622 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 13 | 13 | B.4.5 | 0.154762 |
ORF1ab/nsp6 | 287 | A287del | GCC | --- | 12 | 12 | All | 0.000002 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 11 | 11 | AY.34 | 0.001067 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 11 | 11 | B.1.177.81 | 0.002083 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 10 | 10 | AY.16.1 | 0.004699 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 9 | 10 | AY.42 | 0.000362 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 1 | 10 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 10 | 10 | B.1.177.50 | 0.046948 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 10 | 10 | B.1.526 | 0.000235 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 8 | 8 | B | 0.001022 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 6 | 8 | B.1.438.1 | 0.000644 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 8 | B.1.438.1 | 0.000215 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 6 | 7 | B.1.1.7 | 0.000005 |
ORF1ab/nsp6 | 287 | A287T | GcC | AcA | 1 | 7 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 6 | 6 | B.1.267 | 0.111111 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 6 | 6 | B.1.36.28 | 0.034483 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 5 | 5 | Q.4 | 0.002274 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 4 | 4 | AE.1 | 0.045455 |
ORF1ab/nsp6 | 287 | A287D | gCc | gAc | 3 | 4 | All | 0.000001 |
ORF1ab/nsp6 | 287 | A287D | gCC | gAT | 1 | 4 | All | 0 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 4 | 4 | B.1.177.72 | 0.013559 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 4 | 4 | B.1.239 | 0.004884 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 4 | 4 | B.1.409 | 0.003125 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 3 | 3 | A.2.5.2 | 0.004717 |
ORF1ab/nsp6 | 287 | A287G | gCc | gGc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 3 | 3 | AY.120.2.1 | 0.001495 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp6 | 287 | A287del | GCC | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp6 | 287 | A287S | GCC | AGT | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 287 | A287P | Gcc | Ccc | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.31 | 0.037037 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 1 | 2 | AY.36 | 0.000148 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 2 | AY.36 | 0.000148 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 1 | 2 | B.1.1.1 | 0.000327 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 2 | B.1.1.1 | 0.000327 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | B.1.1.310 | 0.030303 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | B.1.169 | 0.029851 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp6 | 287 | A287S | GcC | TcA | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | B.1.590 | 0.009091 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcG | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 287 | A287G | gCc | gGc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp6 | 287 | A287del1 | gCc | g-c | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 287 | A287del | GCC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 287 | A287del | GCC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp6 | 287 | A287del | GCC | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 287 | A287D | gCc | gAc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 287 | A287D | gCc | gAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 287 | A287G | gCc | gGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 287 | A287del | GCC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 287 | A287D | gCC | gAT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp6 | 287 | A287del | GCC | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.1.407 | 0.041667 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.1.506 | 0.037037 |
ORF1ab/nsp6 | 287 | A287G | gCc | gGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp6 | 287 | A287del | GCC | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp6 | 287 | A287P | Gcc | Ccc | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp6 | 287 | A287del | GCC | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp6 | 287 | A287del1 | gCc | g-c | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 287 | A287D | gCc | gAc | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp6 | 287 | A287S | Gcc | Tcc | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp6 | 287 | A287del | GCC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 287 | A287P | Gcc | Ccc | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp6 | 287 | A287T | Gcc | Acc | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 287 | A287del | GCC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp6 | 287 | A287V | gCc | gTc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp6 | 287 | A287A | gcC | gcA | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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