CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 280

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6280G280GG3849GsynggCggA635245470.71583811810-11812
ORF1ab/nsp6280G280GG3849GsynggCggT635218040.28400511810-11812
ORF1ab/nsp6280G280GG3849GsynggCggG635210.00015743111810-11812
ORF1ab/nsp6280G280SG3849SnonsynGgcAgc17140.82352911810-11812
ORF1ab/nsp6280G280SG3849SnonsynGGCTCA1720.11764711810-11812
ORF1ab/nsp6280G280SG3849SnonsynGgCAgT1710.058823511810-11812
ORF1ab/nsp6280G280delG3849deldelGGC---1414111810-11812
ORF1ab/nsp6280G280DG3849DnonsyngGcgAc1212111810-11812
ORF1ab/nsp6280G280CG3849CnonsynGgcTgc1212111810-11812
ORF1ab/nsp6280G280VG3849VnonsyngGcgTc980.88888911810-11812
ORF1ab/nsp6280G280VG3849VnonsyngGCgTT910.11111111810-11812
ORF1ab/nsp6280G280TG3849TnonsynGGCACA22111810-11812
ORF1ab/nsp6280G280IG3849InonsynGGcATc11111810-11812

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6280G280GggCggA45476352All0.00087
ORF1ab/nsp6280G280GggCggT18046352All0.000345
ORF1ab/nsp6280G280GggCggG16352All0
ORF1ab/nsp6280G280GggCggA38383846B.1.3510.11409
ORF1ab/nsp6280G280GggCggT73846B.1.3510.000208
ORF1ab/nsp6280G280GggCggG13846B.1.3510.00003
ORF1ab/nsp6280G280GggCggT464464B.1.177.150.292744
ORF1ab/nsp6280G280GggCggA265445B.1.1.70.000237
ORF1ab/nsp6280G280GggCggT180445B.1.1.70.000161
ORF1ab/nsp6280G280GggCggT278278B.1.617.10.035852
ORF1ab/nsp6280G280GggCggT205223AY.1030.001273
ORF1ab/nsp6280G280GggCggA18223AY.1030.000112
ORF1ab/nsp6280G280GggCggT177215AY.40.000275
ORF1ab/nsp6280G280GggCggA38215AY.40.000059
ORF1ab/nsp6280G280GggCggT4146P.10.000646
ORF1ab/nsp6280G280GggCggA546P.10.000079
ORF1ab/nsp6280G280GggCggT4545AA.81
ORF1ab/nsp6280G280GggCggA3645B.10.00033
ORF1ab/nsp6280G280GggCggT945B.10.000082
ORF1ab/nsp6280G280GggCggT4242B.1.438.10.004505
ORF1ab/nsp6280G280GggCggT4041B.1.2580.002662
ORF1ab/nsp6280G280GggCggA141B.1.2580.000067
ORF1ab/nsp6280G280GggCggA2331B.1.1770.000303
ORF1ab/nsp6280G280GggCggT831B.1.1770.000105
ORF1ab/nsp6280G280GggCggA1831B.1.617.20.000068
ORF1ab/nsp6280G280GggCggT1331B.1.617.20.000049
ORF1ab/nsp6280G280GggCggT1629AY.430.000071
ORF1ab/nsp6280G280GggCggA1329AY.430.000058
ORF1ab/nsp6280G280GggCggT1626AY.440.000097
ORF1ab/nsp6280G280GggCggA1026AY.440.000061
ORF1ab/nsp6280G280GggCggA2626R.10.00234
ORF1ab/nsp6280G280GggCggT2025AY.250.00012
ORF1ab/nsp6280G280GggCggA525AY.250.00003
ORF1ab/nsp6280G280GggCggA2425B.1.1600.000749
ORF1ab/nsp6280G280GggCggT125B.1.1600.000031
ORF1ab/nsp6280G280GggCggT2424AY.590.012712
ORF1ab/nsp6280G280GggCggT2424B.1.1.1760.010545
ORF1ab/nsp6280G280GggCggA2021AY.290.000315
ORF1ab/nsp6280G280GggCggT121AY.290.000016
ORF1ab/nsp6280G280GggCggA1419B.1.10.000254
ORF1ab/nsp6280G280GggCggT519B.1.10.000091
ORF1ab/nsp6280G280GggCggA1219B.1.20.000106
ORF1ab/nsp6280G280GggCggT719B.1.20.000062
ORF1ab/nsp6280G280SGgcAgc1417All0.000003
ORF1ab/nsp6280G280SGGCTCA217All0
ORF1ab/nsp6280G280SGgCAgT117All0
ORF1ab/nsp6280G280GggCggT1616AY.200.000622
ORF1ab/nsp6280G280delGGC---1414All0.000003
ORF1ab/nsp6280G280GggCggT913AY.30.00009
ORF1ab/nsp6280G280GggCggA413AY.30.00004
ORF1ab/nsp6280G280GggCggA1313AY.340.001261
ORF1ab/nsp6280G280GggCggT1313Q.40.005912
ORF1ab/nsp6280G280DgGcgAc1212All0.000002
ORF1ab/nsp6280G280CGgcTgc1212All0.000002
ORF1ab/nsp6280G280GggCggT1111B.1.36.180.004622
ORF1ab/nsp6280G280GggCggA610B.1.4290.000141
ORF1ab/nsp6280G280GggCggT410B.1.4290.000094
ORF1ab/nsp6280G280GggCggT99A.2.50.004491
ORF1ab/nsp6280G280VgGcgTc89All0.000002
ORF1ab/nsp6280G280VgGCgTT19All0
ORF1ab/nsp6280G280GggCggT79AY.1020.000186
ORF1ab/nsp6280G280GggCggA29AY.1020.000053
ORF1ab/nsp6280G280GggCggT99B.1.1.2140.000499
ORF1ab/nsp6280G280GggCggA88AY.1060.002679
ORF1ab/nsp6280G280GggCggT88B.1.4000.003432
ORF1ab/nsp6280G280GggCggT47AY.390.000099
ORF1ab/nsp6280G280GggCggA37AY.390.000074
ORF1ab/nsp6280G280GggCggT57AY.450.000608
ORF1ab/nsp6280G280GggCggA27AY.450.000243
ORF1ab/nsp6280G280GggCggT77B.1.177.570.001967
ORF1ab/nsp6280G280GggCggA56AY.39.10.000198
ORF1ab/nsp6280G280GggCggT16AY.39.10.00004
ORF1ab/nsp6280G280GggCggT46B.1.5260.000094
ORF1ab/nsp6280G280GggCggA26B.1.5260.000047
ORF1ab/nsp6280G280GggCggA46D.20.0003
ORF1ab/nsp6280G280GggCggT26D.20.00015
ORF1ab/nsp6280G280GggCggA66Q.80.000989
ORF1ab/nsp6280G280GggCggA55AY.23.10.002087
ORF1ab/nsp6280G280GggCggA55AY.4.20.000108
ORF1ab/nsp6280G280GggCggA55AY.560.008026
ORF1ab/nsp6280G280GggCggT45B.1.1.5190.000159
ORF1ab/nsp6280G280GggCggA15B.1.1.5190.00004
ORF1ab/nsp6280G280SGgcAgc55B.1.3510.000149
ORF1ab/nsp6280G280GggCggT55B.1.5760.004533
ORF1ab/nsp6280G280GggCggA44AY.1000.000184
ORF1ab/nsp6280G280GggCggA34AY.50.000062
ORF1ab/nsp6280G280GggCggT14AY.50.000021
ORF1ab/nsp6280G280GggCggA44AY.9.20.000147
ORF1ab/nsp6280G280GggCggT44B.1.36.380.006568
ORF1ab/nsp6280G280GggCggA44P.50.054795
ORF1ab/nsp6280G280GggCggT23AY.260.000057
ORF1ab/nsp6280G280GggCggA13AY.260.000028
ORF1ab/nsp6280G280GggCggT33AY.3.10.000256
ORF1ab/nsp6280G280GggCggA23AY.460.000208
ORF1ab/nsp6280G280GggCggT13AY.460.000104
ORF1ab/nsp6280G280GggCggA33AY.5.30.001012
ORF1ab/nsp6280G280GggCggA23AY.99.20.000184
ORF1ab/nsp6280G280GggCggT13AY.99.20.000092
ORF1ab/nsp6280G280GggCggA23B0.000256
ORF1ab/nsp6280G280GggCggT13B0.000128
ORF1ab/nsp6280G280delGGC---33B.10.000027
ORF1ab/nsp6280G280GggCggA33B.1.1.3890.018182
ORF1ab/nsp6280G280SGgcAgc23B.1.1.70.000002
ORF1ab/nsp6280G280SGgCAgT13B.1.1.70.000001
ORF1ab/nsp6280G280GggCggT33B.1.177.600.000655
ORF1ab/nsp6280G280GggCggA33B.1.351.50.001799
ORF1ab/nsp6280G280GggCggA23B.1.360.000292
ORF1ab/nsp6280G280GggCggT13B.1.360.000146
ORF1ab/nsp6280G280GggCggA33B.1.6200.002838
ORF1ab/nsp6280G280TGGCACA220.111111
ORF1ab/nsp6280G280SGGCTCA220.111111
ORF1ab/nsp6280G280DgGcgAc220.111111
ORF1ab/nsp6280G280TGGCACA22All0
ORF1ab/nsp6280G280GggCggT22AY.1040.003968
ORF1ab/nsp6280G280GggCggT12AY.1130.000142
ORF1ab/nsp6280G280GggCggA12AY.1130.000142
ORF1ab/nsp6280G280GggCggT12AY.230.00007
ORF1ab/nsp6280G280GggCggA12AY.230.00007
ORF1ab/nsp6280G280GggCggT22AY.330.000134
ORF1ab/nsp6280G280CGgcTgc22AY.420.00008
ORF1ab/nsp6280G280GggCggA22AY.470.000062
ORF1ab/nsp6280G280GggCggT12AY.540.000095
ORF1ab/nsp6280G280GggCggA12AY.540.000095
ORF1ab/nsp6280G280GggCggT12AY.610.000105
ORF1ab/nsp6280G280GggCggA12AY.610.000105
ORF1ab/nsp6280G280GggCggT22AY.70.000392
ORF1ab/nsp6280G280GggCggT22AY.700.000417
ORF1ab/nsp6280G280GggCggA22AY.730.001331
ORF1ab/nsp6280G280DgGcgAc22B.10.000018
ORF1ab/nsp6280G280CGgcTgc22B.10.000018
ORF1ab/nsp6280G280VgGcgTc22B.10.000018
ORF1ab/nsp6280G280VgGcgTc12B.1.10.000018
ORF1ab/nsp6280G280VgGCgTT12B.1.10.000018
ORF1ab/nsp6280G280GggCggT22B.1.1.10.000653
ORF1ab/nsp6280G280GggCggA22B.1.1.2220.000408
ORF1ab/nsp6280G280GggCggA12B.1.1.280.000311
ORF1ab/nsp6280G280GggCggT12B.1.1.280.000311
ORF1ab/nsp6280G280GggCggA22B.1.1.390.001019
ORF1ab/nsp6280G280GggCggA22B.1.1.4420.037037
ORF1ab/nsp6280G280GggCggA22B.1.1.5070.017391
ORF1ab/nsp6280G280GggCggA22B.1.2210.000142
ORF1ab/nsp6280G280GggCggA12B.1.36.290.000517
ORF1ab/nsp6280G280GggCggT12B.1.36.290.000517
ORF1ab/nsp6280G280GggCggA22B.1.36.80.002
ORF1ab/nsp6280G280GggCggA22B.1.3690.00057
ORF1ab/nsp6280G280GggCggA22B.1.5950.000522
ORF1ab/nsp6280G280GggCggA12B.1.5960.000087
ORF1ab/nsp6280G280GggCggT12B.1.5960.000087
ORF1ab/nsp6280G280GggCggA22B.390.004662
ORF1ab/nsp6280G280GggCggT22N.60.014184
ORF1ab/nsp6280G280GggCggA11A0.000387
ORF1ab/nsp6280G280CGgcTgc11A.10.000282
ORF1ab/nsp6280G280IGGcATc11All0
ORF1ab/nsp6280G280GggCggT11AM.40.003571
ORF1ab/nsp6280G280DgGcgAc11AY.1030.000006
ORF1ab/nsp6280G280GggCggA11AY.116.10.000311
ORF1ab/nsp6280G280GggCggA11AY.1200.000037
ORF1ab/nsp6280G280GggCggA11AY.120.20.001285
ORF1ab/nsp6280G280GggCggA11AY.120.2.10.000498
ORF1ab/nsp6280G280GggCggA11AY.1210.000135
ORF1ab/nsp6280G280GggCggA11AY.130.000161
ORF1ab/nsp6280G280GggCggT11AY.160.00038
ORF1ab/nsp6280G280DgGcgAc11AY.230.00007
ORF1ab/nsp6280G280delGGC---11AY.250.000006
ORF1ab/nsp6280G280GggCggA11AY.270.000065
ORF1ab/nsp6280G280GggCggT11AY.300.000396
ORF1ab/nsp6280G280CGgcTgc11AY.330.000067
ORF1ab/nsp6280G280GggCggA11AY.360.000148
ORF1ab/nsp6280G280DgGcgAc11AY.390.000025
ORF1ab/nsp6280G280delGGC---11AY.4.50.000107
ORF1ab/nsp6280G280GggCggT11AY.420.00004
ORF1ab/nsp6280G280CGgcTgc11AY.430.000004
ORF1ab/nsp6280G280IGGcATc11AY.440.000006
ORF1ab/nsp6280G280delGGC---11AY.440.000006
ORF1ab/nsp6280G280GggCggA11AY.520.000814
ORF1ab/nsp6280G280CGgcTgc11AY.520.000814
ORF1ab/nsp6280G280GggCggA11AY.640.000595
ORF1ab/nsp6280G280SGgcAgc11AY.670.000464
ORF1ab/nsp6280G280DgGcgAc11AY.690.000187
ORF1ab/nsp6280G280GggCggA11AY.7.10.000113
ORF1ab/nsp6280G280delGGC---11AY.7.20.000559
ORF1ab/nsp6280G280GggCggT11AY.710.000475
ORF1ab/nsp6280G280GggCggA11AY.860.00083
ORF1ab/nsp6280G280SGgcAgc11AY.960.002075
ORF1ab/nsp6280G280GggCggA11AY.98.10.000048
ORF1ab/nsp6280G280CGgcTgc11B0.000128
ORF1ab/nsp6280G280SGgcAgc11B0.000128
ORF1ab/nsp6280G280DgGcgAc11B0.000128
ORF1ab/nsp6280G280SGgcAgc11B.10.000009
ORF1ab/nsp6280G280delGGC---11B.1.10.000018
ORF1ab/nsp6280G280GggCggT11B.1.1.1640.005155
ORF1ab/nsp6280G280GggCggT11B.1.1.1700.001247
ORF1ab/nsp6280G280GggCggA11B.1.1.1860.003436
ORF1ab/nsp6280G280GggCggT11B.1.1.250.000569
ORF1ab/nsp6280G280GggCggA11B.1.1.2790.001121
ORF1ab/nsp6280G280GggCggA11B.1.1.2820.011628
ORF1ab/nsp6280G280GggCggA11B.1.1.3060.000438
ORF1ab/nsp6280G280GggCggA11B.1.1.3290.003846
ORF1ab/nsp6280G280VgGcgTc11B.1.1.4160.000905
ORF1ab/nsp6280G280GggCggA11B.1.1.4320.001266
ORF1ab/nsp6280G280GggCggA11B.1.1.4330.001425
ORF1ab/nsp6280G280GggCggA11B.1.1.630.000386
ORF1ab/nsp6280G280delGGC---11B.1.1.70.000001
ORF1ab/nsp6280G280VgGcgTc11B.1.1.70.000001
ORF1ab/nsp6280G280GggCggA11B.1.1040.00369
ORF1ab/nsp6280G280GggCggA11B.1.1280.000635
ORF1ab/nsp6280G280DgGcgAc11B.1.1600.000031
ORF1ab/nsp6280G280GggCggA11B.1.1700.00431
ORF1ab/nsp6280G280VgGcgTc11B.1.1770.000013
ORF1ab/nsp6280G280GggCggT11B.1.177.160.000664
ORF1ab/nsp6280G280GggCggA11B.1.177.330.001645
ORF1ab/nsp6280G280GggCggA11B.1.177.440.000519
ORF1ab/nsp6280G280CGgcTgc11B.1.177.60.000977
ORF1ab/nsp6280G280GggCggT11B.1.177.650.000665
ORF1ab/nsp6280G280GggCggT11B.1.177.700.005917
ORF1ab/nsp6280G280delGGC---11B.1.177.730.000566
ORF1ab/nsp6280G280GggCggA11B.1.177.770.000726
ORF1ab/nsp6280G280GggCggT11B.1.177.820.000477
ORF1ab/nsp6280G280GggCggA11B.1.177.860.000183
ORF1ab/nsp6280G280VgGcgTc11B.1.20.000009
ORF1ab/nsp6280G280SGgcAgc11B.1.20.000009
ORF1ab/nsp6280G280delGGC---11B.1.20.000009
ORF1ab/nsp6280G280GggCggT11B.1.2030.0625
ORF1ab/nsp6280G280GggCggT11B.1.2240.025
ORF1ab/nsp6280G280GggCggA11B.1.2340.000132
ORF1ab/nsp6280G280GggCggT11B.1.2400.000216
ORF1ab/nsp6280G280SGgcAgc11B.1.2400.000216
ORF1ab/nsp6280G280GggCggT11B.1.258.110.000396
ORF1ab/nsp6280G280GggCggA11B.1.258.170.000104
ORF1ab/nsp6280G280CGgcTgc11B.1.2800.007143
ORF1ab/nsp6280G280delGGC---11B.1.3510.00003
ORF1ab/nsp6280G280GggCggA11B.1.351.20.000303
ORF1ab/nsp6280G280GggCggA11B.1.36.70.004
ORF1ab/nsp6280G280GggCggA11B.1.3670.000792
ORF1ab/nsp6280G280GggCggA11B.1.4270.00005
ORF1ab/nsp6280G280GggCggT11B.1.4590.004082
ORF1ab/nsp6280G280SGgcAgc11B.1.466.20.000391
ORF1ab/nsp6280G280GggCggA11B.1.5160.001957
ORF1ab/nsp6280G280GggCggA11B.1.5240.001406
ORF1ab/nsp6280G280GggCggT11B.1.5250.000113
ORF1ab/nsp6280G280GggCggA11B.1.5440.006024
ORF1ab/nsp6280G280GggCggT11B.1.5600.00463
ORF1ab/nsp6280G280GggCggT11B.1.5610.000397
ORF1ab/nsp6280G280GggCggT11B.1.5750.000303
ORF1ab/nsp6280G280CGgcTgc11B.1.5760.000907
ORF1ab/nsp6280G280VgGcgTc11B.1.5960.000087
ORF1ab/nsp6280G280delGGC---11B.1.617.20.000004
ORF1ab/nsp6280G280GggCggT11B.1.619.10.000641
ORF1ab/nsp6280G280GggCggA11B.1.6210.000089
ORF1ab/nsp6280G280GggCggT11B.1.621.10.000506
ORF1ab/nsp6280G280GggCggA11B.1.930.000934
ORF1ab/nsp6280G280GggCggA11B.550.00295
ORF1ab/nsp6280G280DgGcgAc11B.6.60.000889
ORF1ab/nsp6280G280DgGcgAc11C.290.0625
ORF1ab/nsp6280G280GggCggA11C.350.000774
ORF1ab/nsp6280G280GggCggT11C.36.30.000567
ORF1ab/nsp6280G280GggCggT11C.370.000116
ORF1ab/nsp6280G280GggCggT11N.30.005814
ORF1ab/nsp6280G280delGGC---11N.40.004255
ORF1ab/nsp6280G280GggCggT11P.1.140.000048
ORF1ab/nsp6280G280GggCggA11P.1.70.000319
ORF1ab/nsp6280G280GggCggA11Q.10.000126
ORF1ab/nsp6280G280GggCggA11W.40.001351