CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 268

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6268A268AA3837AsyngcCgcT361135200.97479911774-11776
ORF1ab/nsp6268A268AA3837AsyngcCgcA3611900.024923811774-11776
ORF1ab/nsp6268A268AA3837AsyngcCgcG361110.00027693211774-11776
ORF1ab/nsp6268A268VA3837VnonsyngCcgTc3793770.99472311774-11776
ORF1ab/nsp6268A268VA3837VnonsyngCCgTT37910.0026385211774-11776
ORF1ab/nsp6268A268VA3837VnonsyngCCgTA37910.0026385211774-11776
ORF1ab/nsp6268A268SA3837SnonsynGccTcc8181111774-11776
ORF1ab/nsp6268A268TA3837TnonsynGccAcc6363111774-11776
ORF1ab/nsp6268A268delA3837deldelGCC---1919111774-11776
ORF1ab/nsp6268A268DA3837DnonsyngCcgAc44111774-11776
ORF1ab/nsp6268A268del1A3837del1delGcc-cc430.7511774-11776
ORF1ab/nsp6268A268del1A3837del1delgcCgc-410.2511774-11776
ORF1ab/nsp6268A268GA3837GnonsyngCcgGc22111774-11776
ORF1ab/nsp6268A268PA3837PnonsynGccCcc22111774-11776

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6268A268AgcCgcT35203611All0.000673
ORF1ab/nsp6268A268AgcCgcA903611All0.000017
ORF1ab/nsp6268A268AgcCgcG13611All0
ORF1ab/nsp6268A268AgcCgcT10331033B.1.1.2980.890517
ORF1ab/nsp6268A268AgcCgcT607614AY.40.000945
ORF1ab/nsp6268A268AgcCgcA7614AY.40.000011
ORF1ab/nsp6268A268AgcCgcT559559AY.470.017388
ORF1ab/nsp6268A268AgcCgcT555555AY.290.008754
ORF1ab/nsp6268A268VgCcgTc377379All0.000072
ORF1ab/nsp6268A268VgCCgTA1379All0
ORF1ab/nsp6268A268VgCCgTT1379All0
ORF1ab/nsp6268A268AgcCgcT263279B.1.1.70.000235
ORF1ab/nsp6268A268AgcCgcA15279B.1.1.70.000013
ORF1ab/nsp6268A268AgcCgcG1279B.1.1.70.000001
ORF1ab/nsp6268A268AgcCgcT116120AY.260.003284
ORF1ab/nsp6268A268AgcCgcA4120AY.260.000113
ORF1ab/nsp6268A268SGccTcc8181All0.000015
ORF1ab/nsp6268A268AgcCgcT6473B.1.617.20.000241
ORF1ab/nsp6268A268AgcCgcA973B.1.617.20.000034
ORF1ab/nsp6268A268VgCcgTc7272AY.40.000112
ORF1ab/nsp6268A268VgCcgTc7171B.1.1.70.000064
ORF1ab/nsp6268A268TGccAcc6363All0.000012
ORF1ab/nsp6268A268SGccTcc3030B.1.617.20.000113
ORF1ab/nsp6268A268AgcCgcT2428AY.430.000106
ORF1ab/nsp6268A268AgcCgcA428AY.430.000018
ORF1ab/nsp6268A268VgCcgTc2424AY.1030.000149
ORF1ab/nsp6268A268SGccTcc2222AY.1020.000583
ORF1ab/nsp6268A268TGccAcc2222B.1.1.70.00002
ORF1ab/nsp6268A268AgcCgcA1621AY.1030.000099
ORF1ab/nsp6268A268AgcCgcT521AY.1030.000031
ORF1ab/nsp6268A268delGCC---1919All0.000004
ORF1ab/nsp6268A268AgcCgcT1819B.10.000165
ORF1ab/nsp6268A268AgcCgcA119B.10.000009
ORF1ab/nsp6268A268VgCcgTc1818AY.430.00008
ORF1ab/nsp6268A268AgcCgcT1717AY.440.000103
ORF1ab/nsp6268A268VgCcgTc1717B.1.1.5190.000675
ORF1ab/nsp6268A268VgCcgTc1717B.1.2430.001183
ORF1ab/nsp6268A268AgcCgcT1516B.1.20.000132
ORF1ab/nsp6268A268AgcCgcA116B.1.20.000009
ORF1ab/nsp6268A268VgCcgTc1414AY.30.000139
ORF1ab/nsp6268A268AgcCgcT1313B.1.2430.000905
ORF1ab/nsp6268A268VgCcgTc1313B.1.4270.000656
ORF1ab/nsp6268A268AgcCgcT1212B.1.1.280.003735
ORF1ab/nsp6268A268AgcCgcT1011AY.30.000099
ORF1ab/nsp6268A268AgcCgcA111AY.30.00001
ORF1ab/nsp6268A268VgCcgTc911B.1.10.000163
ORF1ab/nsp6268A268VgCCgTA111B.1.10.000018
ORF1ab/nsp6268A268VgCCgTT111B.1.10.000018
ORF1ab/nsp6268A268AgcCgcT811B.1.1770.000105
ORF1ab/nsp6268A268AgcCgcA311B.1.1770.00004
ORF1ab/nsp6268A268AgcCgcT1010AY.1060.003349
ORF1ab/nsp6268A268AgcCgcT910B.1.10.000163
ORF1ab/nsp6268A268AgcCgcA110B.1.10.000018
ORF1ab/nsp6268A268VgCcgTc1010B.1.617.20.000038
ORF1ab/nsp6268A268VgCcgTc1010P.10.000158
ORF1ab/nsp6268A268VgCcgTc99B.1.1.1480.078947
ORF1ab/nsp6268A268TGccAcc99B.1.1770.000119
ORF1ab/nsp6268A268AgcCgcT99B.1.177.770.006536
ORF1ab/nsp6268A268AgcCgcT99B.1.4290.000212
ORF1ab/nsp6268A268AgcCgcT78AY.1020.000186
ORF1ab/nsp6268A268AgcCgcA18AY.1020.000027
ORF1ab/nsp6268A268AgcCgcA58AY.390.000124
ORF1ab/nsp6268A268AgcCgcT38AY.390.000074
ORF1ab/nsp6268A268SGccTcc88AY.46.60.000578
ORF1ab/nsp6268A268AgcCgcT77AY.130.001127
ORF1ab/nsp6268A268AgcCgcT47AY.250.000024
ORF1ab/nsp6268A268AgcCgcA37AY.250.000018
ORF1ab/nsp6268A268VgCcgTc77B.1.1.740.030172
ORF1ab/nsp6268A268AgcCgcT77B.1.3510.000208
ORF1ab/nsp6268A268VgCcgTc77B.1.5240.009845
ORF1ab/nsp6268A268AgcCgcT46AY.1200.000149
ORF1ab/nsp6268A268AgcCgcA26AY.1200.000074
ORF1ab/nsp6268A268TGccAcc66AY.30.00006
ORF1ab/nsp6268A268AgcCgcT66AY.400.005786
ORF1ab/nsp6268A268VgCcgTc66B.1.1770.000079
ORF1ab/nsp6268A268AgcCgcT66B.1.177.860.001101
ORF1ab/nsp6268A268AgcCgcT66B.1.258.170.000624
ORF1ab/nsp6268A268VgCcgTc66B.1.36.10.006842
ORF1ab/nsp6268A268VgCcgTc55A.300.714286
ORF1ab/nsp6268A268AgcCgcT55AY.20.001781
ORF1ab/nsp6268A268AgcCgcT35AY.360.000445
ORF1ab/nsp6268A268AgcCgcA25AY.360.000296
ORF1ab/nsp6268A268VgCcgTc55B.1.20.000044
ORF1ab/nsp6268A268AgcCgcT55B.1.36.80.005
ORF1ab/nsp6268A268AgcCgcT44A.2.50.001996
ORF1ab/nsp6268A268DgCcgAc44All0.000001
ORF1ab/nsp6268A268del1Gcc-cc34All0.000001
ORF1ab/nsp6268A268del1gcCgc-14All0
ORF1ab/nsp6268A268AgcCgcT34AY.1190.000106
ORF1ab/nsp6268A268AgcCgcA14AY.1190.000035
ORF1ab/nsp6268A268AgcCgcT44AY.29.10.000882
ORF1ab/nsp6268A268AgcCgcT44AY.610.000419
ORF1ab/nsp6268A268VgCcgTc44B.10.000037
ORF1ab/nsp6268A268AgcCgcT44B.1.1.2140.000222
ORF1ab/nsp6268A268SGccTcc44B.1.1.70.000004
ORF1ab/nsp6268A268VgCcgTc44B.1.36.190.037037
ORF1ab/nsp6268A268AgcCgcT44P.10.000063
ORF1ab/nsp6268A268AgcCgcT33AY.1000.000138
ORF1ab/nsp6268A268AgcCgcT33AY.116.10.000934
ORF1ab/nsp6268A268AgcCgcT33AY.200.000117
ORF1ab/nsp6268A268TGccAcc33AY.40.000005
ORF1ab/nsp6268A268AgcCgcT33AY.420.000121
ORF1ab/nsp6268A268VgCcgTc33AY.440.000018
ORF1ab/nsp6268A268AgcCgcT33AY.46.50.000595
ORF1ab/nsp6268A268VgCcgTc33AY.75.10.000541
ORF1ab/nsp6268A268AgcCgcA23AY.90.000135
ORF1ab/nsp6268A268AgcCgcT13AY.90.000068
ORF1ab/nsp6268A268AgcCgcT33AY.98.10.000145
ORF1ab/nsp6268A268delGCC---33B.10.000027
ORF1ab/nsp6268A268SGccTcc33B.1.1.630.001157
ORF1ab/nsp6268A268AgcCgcT23B.1.5260.000047
ORF1ab/nsp6268A268AgcCgcA13B.1.5260.000024
ORF1ab/nsp6268A268TGccAcc33B.1.617.20.000011
ORF1ab/nsp6268A268AgcCgcT33C.37.10.007853
ORF1ab/nsp6268A268GgCcgGc220.111111
ORF1ab/nsp6268A268PGccCcc22All0
ORF1ab/nsp6268A268GgCcgGc22All0
ORF1ab/nsp6268A268AgcCgcT22AY.1160.000574
ORF1ab/nsp6268A268VgCcgTc22AY.250.000012
ORF1ab/nsp6268A268SGccTcc22AY.250.000012
ORF1ab/nsp6268A268VgCcgTc22AY.300.000791
ORF1ab/nsp6268A268VgCcgTc22AY.320.001065
ORF1ab/nsp6268A268AgcCgcT22AY.320.001065
ORF1ab/nsp6268A268delGCC---22AY.4.50.000215
ORF1ab/nsp6268A268AgcCgcT22AY.460.000208
ORF1ab/nsp6268A268VgCcgTc22AY.470.000062
ORF1ab/nsp6268A268AgcCgcT22AY.840.000875
ORF1ab/nsp6268A268DgCcgAc22B.10.000018
ORF1ab/nsp6268A268AgcCgcT22B.1.1.1610.007067
ORF1ab/nsp6268A268AgcCgcA12B.1.1.5190.00004
ORF1ab/nsp6268A268AgcCgcT12B.1.1.5190.00004
ORF1ab/nsp6268A268delGCC---22B.1.1.70.000002
ORF1ab/nsp6268A268VgCcgTc22B.1.1.710.012121
ORF1ab/nsp6268A268VgCcgTc22B.1.1110.00235
ORF1ab/nsp6268A268AgcCgcT22B.1.1600.000062
ORF1ab/nsp6268A268VgCcgTc22B.1.1600.000062
ORF1ab/nsp6268A268AgcCgcT22B.1.2340.000264
ORF1ab/nsp6268A268TGccAcc22B.1.2580.000133
ORF1ab/nsp6268A268VgCcgTc22B.1.2580.000133
ORF1ab/nsp6268A268VgCcgTc22B.1.3510.000059
ORF1ab/nsp6268A268AgcCgcT22B.1.4000.000858
ORF1ab/nsp6268A268AgcCgcT22B.1.4260.002018
ORF1ab/nsp6268A268AgcCgcT22B.1.4270.000101
ORF1ab/nsp6268A268TGccAcc22B.1.5260.000047
ORF1ab/nsp6268A268VgCcgTc22B.1.5260.000047
ORF1ab/nsp6268A268TGccAcc22B.1.5640.000852
ORF1ab/nsp6268A268del1Gcc-cc22B.1.6270.00404
ORF1ab/nsp6268A268AgcCgcT22C.370.000232
ORF1ab/nsp6268A268TGccAcc22P.10.000032
ORF1ab/nsp6268A268AgcCgcT22Q.10.000253
ORF1ab/nsp6268A268AgcCgcT11A.50.001923
ORF1ab/nsp6268A268VgCcgTc11AY.1000.000046
ORF1ab/nsp6268A268TGccAcc11AY.1030.000006
ORF1ab/nsp6268A268VgCcgTc11AY.1050.000643
ORF1ab/nsp6268A268AgcCgcA11AY.1080.001103
ORF1ab/nsp6268A268VgCcgTc11AY.1100.000113
ORF1ab/nsp6268A268AgcCgcT11AY.1110.000183
ORF1ab/nsp6268A268SGccTcc11AY.1140.000231
ORF1ab/nsp6268A268AgcCgcT11AY.1170.000085
ORF1ab/nsp6268A268VgCcgTc11AY.1190.000035
ORF1ab/nsp6268A268TGccAcc11AY.1200.000037
ORF1ab/nsp6268A268AgcCgcA11AY.160.00038
ORF1ab/nsp6268A268SGccTcc11AY.200.000039
ORF1ab/nsp6268A268VgCcgTc11AY.240.000431
ORF1ab/nsp6268A268delGCC---11AY.250.000006
ORF1ab/nsp6268A268SGccTcc11AY.290.000016
ORF1ab/nsp6268A268VgCcgTc11AY.3.10.000085
ORF1ab/nsp6268A268AgcCgcT11AY.330.000067
ORF1ab/nsp6268A268VgCcgTc11AY.340.000097
ORF1ab/nsp6268A268VgCcgTc11AY.390.000025
ORF1ab/nsp6268A268SGccTcc11AY.390.000025
ORF1ab/nsp6268A268SGccTcc11AY.40.000002
ORF1ab/nsp6268A268delGCC---11AY.40.000002
ORF1ab/nsp6268A268VgCcgTc11AY.4.20.000022
ORF1ab/nsp6268A268AgcCgcA11AY.4.20.000022
ORF1ab/nsp6268A268delGCC---11AY.430.000004
ORF1ab/nsp6268A268SGccTcc11AY.430.000004
ORF1ab/nsp6268A268TGccAcc11AY.430.000004
ORF1ab/nsp6268A268TGccAcc11AY.440.000006
ORF1ab/nsp6268A268VgCcgTc11AY.450.000122
ORF1ab/nsp6268A268SGccTcc11AY.470.000031
ORF1ab/nsp6268A268VgCcgTc11AY.5.40.000277
ORF1ab/nsp6268A268VgCcgTc11AY.540.000095
ORF1ab/nsp6268A268AgcCgcT11AY.540.000095
ORF1ab/nsp6268A268VgCcgTc11AY.60.000041
ORF1ab/nsp6268A268DgCcgAc11AY.610.000105
ORF1ab/nsp6268A268AgcCgcA11AY.620.000436
ORF1ab/nsp6268A268AgcCgcA11AY.680.000274
ORF1ab/nsp6268A268AgcCgcT11AY.70.000196
ORF1ab/nsp6268A268SGccTcc11AY.7.10.000113
ORF1ab/nsp6268A268AgcCgcT11AY.75.10.00018
ORF1ab/nsp6268A268SGccTcc11AY.980.000079
ORF1ab/nsp6268A268VgCcgTc11AY.99.20.000092
ORF1ab/nsp6268A268AgcCgcT11B0.000128
ORF1ab/nsp6268A268TGccAcc11B.10.000009
ORF1ab/nsp6268A268delGCC---11B.1.10.000018
ORF1ab/nsp6268A268SGccTcc11B.1.10.000018
ORF1ab/nsp6268A268AgcCgcT11B.1.1.1330.008475
ORF1ab/nsp6268A268AgcCgcT11B.1.1.1760.000439
ORF1ab/nsp6268A268VgCcgTc11B.1.1.2050.003717
ORF1ab/nsp6268A268AgcCgcA11B.1.1.250.000569
ORF1ab/nsp6268A268AgcCgcA11B.1.1.2610.008621
ORF1ab/nsp6268A268AgcCgcT11B.1.1.3160.000925
ORF1ab/nsp6268A268TGccAcc11B.1.1.3250.025641
ORF1ab/nsp6268A268VgCcgTc11B.1.1.4110.014706
ORF1ab/nsp6268A268AgcCgcT11B.1.1.630.000386
ORF1ab/nsp6268A268del1Gcc-cc11B.1.1.70.000001
ORF1ab/nsp6268A268PGccCcc11B.1.1770.000013
ORF1ab/nsp6268A268TGccAcc11B.1.177.120.000152
ORF1ab/nsp6268A268TGccAcc11B.1.177.40.000211
ORF1ab/nsp6268A268AgcCgcT11B.1.177.40.000211
ORF1ab/nsp6268A268AgcCgcA11B.1.177.530.002392
ORF1ab/nsp6268A268TGccAcc11B.1.177.730.000566
ORF1ab/nsp6268A268delGCC---11B.1.177.730.000566
ORF1ab/nsp6268A268delGCC---11B.1.177.90.001332
ORF1ab/nsp6268A268AgcCgcT11B.1.2060.000816
ORF1ab/nsp6268A268AgcCgcT11B.1.2210.000071
ORF1ab/nsp6268A268DgCcgAc11B.1.2580.000067
ORF1ab/nsp6268A268TGccAcc11B.1.258.210.007752
ORF1ab/nsp6268A268AgcCgcT11B.1.2980.002114
ORF1ab/nsp6268A268AgcCgcA11B.1.3210.034483
ORF1ab/nsp6268A268AgcCgcA11B.1.3320.003497
ORF1ab/nsp6268A268AgcCgcT11B.1.3490.000715
ORF1ab/nsp6268A268VgCcgTc11B.1.3490.000715
ORF1ab/nsp6268A268delGCC---11B.1.3510.00003
ORF1ab/nsp6268A268VgCcgTc11B.1.4080.00369
ORF1ab/nsp6268A268SGccTcc11B.1.4290.000024
ORF1ab/nsp6268A268AgcCgcT11B.1.466.20.000391
ORF1ab/nsp6268A268AgcCgcT11B.1.4680.005714
ORF1ab/nsp6268A268AgcCgcT11B.1.5250.000113
ORF1ab/nsp6268A268AgcCgcT11B.1.5330.009615
ORF1ab/nsp6268A268delGCC---11B.1.5610.000397
ORF1ab/nsp6268A268AgcCgcT11B.1.5740.002151
ORF1ab/nsp6268A268VgCcgTc11B.1.5750.000303
ORF1ab/nsp6268A268delGCC---11B.1.5850.027778
ORF1ab/nsp6268A268delGCC---11B.1.5960.000087
ORF1ab/nsp6268A268AgcCgcT11B.1.5960.000087
ORF1ab/nsp6268A268TGccAcc11B.1.617.10.000129
ORF1ab/nsp6268A268PGccCcc11B.1.617.20.000004
ORF1ab/nsp6268A268del1gcCgc-11B.1.617.20.000004
ORF1ab/nsp6268A268delGCC---11B.1.617.20.000004
ORF1ab/nsp6268A268VgCcgTc11B.1.6230.000536
ORF1ab/nsp6268A268AgcCgcT11B.400.000364
ORF1ab/nsp6268A268SGccTcc11C.350.000774
ORF1ab/nsp6268A268AgcCgcT11D.20.000075
ORF1ab/nsp6268A268delGCC---11N.40.004255
ORF1ab/nsp6268A268VgCcgTc11P.1.140.000048
ORF1ab/nsp6268A268AgcCgcT11P.1.140.000048
ORF1ab/nsp6268A268VgCcgTc11P.1.150.000232
ORF1ab/nsp6268A268AgcCgcT11P.1.170.000162
ORF1ab/nsp6268A268AgcCgcT11P.30.001595
ORF1ab/nsp6268A268AgcCgcT11Q.80.000165
ORF1ab/nsp6268A268VgCcgTc11R.10.00009
ORF1ab/nsp6268A268TGccAcc11R.10.00009