CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 262 & Codon = ccT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6262P262PP3831PsynccCccT12299117450.95495611756-11758

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6262P262PccCccT1174512299All0.002246
ORF1ab/nsp6262P262PccCccT39304029B.1.1.70.003518
ORF1ab/nsp6262P262PccCccT9581063AY.40.001491
ORF1ab/nsp6262P262PccCccT918941B.1.1.700.313097
ORF1ab/nsp6262P262PccCccT685685C.160.726405
ORF1ab/nsp6262P262PccCccT443468B.1.617.20.001668
ORF1ab/nsp6262P262PccCccT414414B.1.3690.118083
ORF1ab/nsp6262P262PccCccT384386P.10.00605
ORF1ab/nsp6262P262PccCccT323334AY.1030.002006
ORF1ab/nsp6262P262PccCccT300311B.1.20.002642
ORF1ab/nsp6262P262PccCccT252252B.1.1490.863014
ORF1ab/nsp6262P262PccCccT192201B.10.001759
ORF1ab/nsp6262P262PccCccT177183AY.430.000784
ORF1ab/nsp6262P262PccCccT151179AY.250.000908
ORF1ab/nsp6262P262PccCccT170170B.1.1.2290.977011
ORF1ab/nsp6262P262PccCccT95154AY.200.003692
ORF1ab/nsp6262P262PccCccT147152AY.440.000895
ORF1ab/nsp6262P262PccCccT134135B.1.1770.001764
ORF1ab/nsp6262P262PccCccT106125B.1.10.001923
ORF1ab/nsp6262P262PccCccT8183AY.30.000806
ORF1ab/nsp6262P262PccCccT8283B.1.3510.002438
ORF1ab/nsp6262P262PccCccT6271AY.260.001755
ORF1ab/nsp6262P262PccCccT6262B.1.4290.001459
ORF1ab/nsp6262P262PccCccT6262C.370.007196
ORF1ab/nsp6262P262PccCccT2361AY.290.000363
ORF1ab/nsp6262P262PccCccT5259AY.470.001617
ORF1ab/nsp6262P262PccCccT5757B.1.5260.00134
ORF1ab/nsp6262P262PccCccT5353B.1.2580.003527
ORF1ab/nsp6262P262PccCccT5050B.1.1600.001559
ORF1ab/nsp6262P262PccCccT3641AY.1020.000955
ORF1ab/nsp6262P262PccCccT3941AY.4.20.000846
ORF1ab/nsp6262P262PccCccT3838B.1.4270.001919
ORF1ab/nsp6262P262PccCccT3737AY.1000.001702
ORF1ab/nsp6262P262PccCccT3637AY.610.003772
ORF1ab/nsp6262P262PccCccT3636AY.1180.002255
ORF1ab/nsp6262P262PccCccT3336AY.390.000815
ORF1ab/nsp6262P262PccCccT3131AY.750.001737
ORF1ab/nsp6262P262PccCccT2727B.1.2360.055441
ORF1ab/nsp6262P262PccCccT2626AY.98.10.001259
ORF1ab/nsp6262P262PccCccT2626B.1.617.10.003353
ORF1ab/nsp6262P262PccCccT2525B.1.177.350.017277
ORF1ab/nsp6262P262PccCccT2224Q.80.003628
ORF1ab/nsp6262P262PccCccT1822AY.230.001255
ORF1ab/nsp6262P262PccCccT422B.1.3110.001098
ORF1ab/nsp6262P262PccCccT1822B.1.6210.001593
ORF1ab/nsp6262P262PccCccT2121B.1.2320.011284
ORF1ab/nsp6262P262PccCccT2121B.1.2400.004527
ORF1ab/nsp6262P262PccCccT2121C.360.019126
ORF1ab/nsp6262P262PccCccT1819AY.1190.000636
ORF1ab/nsp6262P262PccCccT1919AY.46.60.001372
ORF1ab/nsp6262P262PccCccT1818B.1.438.10.001931
ORF1ab/nsp6262P262PccCccT1317AY.50.000268
ORF1ab/nsp6262P262PccCccT1216AY.420.000483
ORF1ab/nsp6262P262PccCccT1616AY.9.20.000588
ORF1ab/nsp6262P262PccCccT1515B.1.2210.001065
ORF1ab/nsp6262P262PccCccT1314P.1.140.000621
ORF1ab/nsp6262P262PccCccT1213AY.450.00146
ORF1ab/nsp6262P262PccCccT1313B.1.1.10.004247
ORF1ab/nsp6262P262PccCccT1313B.1.177.440.006746
ORF1ab/nsp6262P262PccCccT1212AY.330.000801
ORF1ab/nsp6262P262PccCccT1112AY.460.001145
ORF1ab/nsp6262P262PccCccT1212B.1.2430.000835
ORF1ab/nsp6262P262PccCccT1212B.1.3670.009509
ORF1ab/nsp6262P262PccCccT1111AY.1170.00093
ORF1ab/nsp6262P262PccCccT1111AY.34.10.005609
ORF1ab/nsp6262P262PccCccT1111P.20.002053
ORF1ab/nsp6262P262PccCccT1010AY.1200.000372
ORF1ab/nsp6262P262PccCccT1010B.1.1.3120.01912
ORF1ab/nsp6262P262PccCccT1010B.1.1.4860.015773
ORF1ab/nsp6262P262PccCccT1010B.1.1310.087719
ORF1ab/nsp6262P262PccCccT1010B.1.4360.010288
ORF1ab/nsp6262P262PccCccT99B.1.1.2220.001836
ORF1ab/nsp6262P262PccCccT99B.1.1.3370.032374
ORF1ab/nsp6262P262PccCccT79B.1.1.5190.000278
ORF1ab/nsp6262P262PccCccT99B.1.1.740.038793
ORF1ab/nsp6262P262PccCccT99B.1.160.320.038627
ORF1ab/nsp6262P262PccCccT99B.1.360.001313
ORF1ab/nsp6262P262PccCccT99B.1.4581
ORF1ab/nsp6262P262PccCccT88AY.120.10.002568
ORF1ab/nsp6262P262PccCccT88AY.60.000329
ORF1ab/nsp6262P262PccCccT88B.1.3890.008016
ORF1ab/nsp6262P262PccCccT88B.1.5240.011252
ORF1ab/nsp6262P262PccCccT88B.1.5750.002427
ORF1ab/nsp6262P262PccCccT78B.1.5960.00061
ORF1ab/nsp6262P262PccCccT77A0.002709
ORF1ab/nsp6262P262PccCccT77AY.39.10.000277
ORF1ab/nsp6262P262PccCccT17AY.46.40.000165
ORF1ab/nsp6262P262PccCccT77AY.770.007892
ORF1ab/nsp6262P262PccCccT77B.1.5250.000792
ORF1ab/nsp6262P262PccCccT77B.1.5880.006369
ORF1ab/nsp6262P262PccCccT77B.1.6270.014141
ORF1ab/nsp6262P262PccCccT77B.1.6300.036649
ORF1ab/nsp6262P262PccCccT77C.260.051471
ORF1ab/nsp6262P262PccCccT66B.1.177.40.001266
ORF1ab/nsp6262P262PccCccT56B.1.2340.00066
ORF1ab/nsp6262P262PccCccT66P.1.120.002904
ORF1ab/nsp6262P262PccCccT55AY.100.00265
ORF1ab/nsp6262P262PccCccT55AY.270.000324
ORF1ab/nsp6262P262PccCccT45AY.340.000388
ORF1ab/nsp6262P262PccCccT55AY.540.000477
ORF1ab/nsp6262P262PccCccT55AY.970.008503
ORF1ab/nsp6262P262PccCccT45B0.000511
ORF1ab/nsp6262P262PccCccT55B.1.1.1530.005476
ORF1ab/nsp6262P262PccCccT55B.1.1.370.000964
ORF1ab/nsp6262P262PccCccT55B.1.177.210.000382
ORF1ab/nsp6262P262PccCccT55B.1.177.790.01171
ORF1ab/nsp6262P262PccCccT55B.1.258.140.004902
ORF1ab/nsp6262P262PccCccT55B.1.2800.035714
ORF1ab/nsp6262P262PccCccT55B.1.466.20.001956
ORF1ab/nsp6262P262PccCccT55B.1.5760.004533
ORF1ab/nsp6262P262PccCccT55P.60.015723
ORF1ab/nsp6262P262PccCccT34AY.1110.000549
ORF1ab/nsp6262P262PccCccT44AY.1160.001147
ORF1ab/nsp6262P262PccCccT44AY.75.10.000721
ORF1ab/nsp6262P262PccCccT44AY.99.20.000369
ORF1ab/nsp6262P262PccCccT44B.1.1.1630.030534
ORF1ab/nsp6262P262PccCccT14B.1.1.3160.000925
ORF1ab/nsp6262P262PccCccT44B.1.1.3720.002755
ORF1ab/nsp6262P262PccCccT44B.1.1.3750.047619
ORF1ab/nsp6262P262PccCccT44B.1.1.390.002039
ORF1ab/nsp6262P262PccCccT44B.1.258.170.000416
ORF1ab/nsp6262P262PccCccT44B.1.4800.00995
ORF1ab/nsp6262P262PccCccT24B.1.6230.001073
ORF1ab/nsp6262P262PccCccT44B.1.6370.000292
ORF1ab/nsp6262P262PccCccT44C.300.006908
ORF1ab/nsp6262P262PccCccT44R.10.00036
ORF1ab/nsp6262P262PccCccT23A.2.50.000998
ORF1ab/nsp6262P262PccCccT33A.270.004967
ORF1ab/nsp6262P262PccCccT33AY.10.001187
ORF1ab/nsp6262P262PccCccT33AY.1210.000406
ORF1ab/nsp6262P262PccCccT33AY.140.000264
ORF1ab/nsp6262P262PccCccT33AY.16.10.00141
ORF1ab/nsp6262P262PccCccT33AY.700.000626
ORF1ab/nsp6262P262PccCccT33AY.840.001312
ORF1ab/nsp6262P262PccCccT23AY.850.000854
ORF1ab/nsp6262P262PccCccT33AY.900.002053
ORF1ab/nsp6262P262PccCccT23AY.920.000575
ORF1ab/nsp6262P262PccCccT33AY.930.000819
ORF1ab/nsp6262P262PccCccT23AY.980.000158
ORF1ab/nsp6262P262PccCccT33B.1.1.2980.002586
ORF1ab/nsp6262P262PccCccT33B.1.1.3060.001315
ORF1ab/nsp6262P262PccCccT33B.1.1.3180.000905
ORF1ab/nsp6262P262PccCccT33B.1.1.3480.002389
ORF1ab/nsp6262P262PccCccT33B.1.1.4130.02069
ORF1ab/nsp6262P262PccCccT33B.1.1.4480.006098
ORF1ab/nsp6262P262PccCccT33B.1.1280.001906
ORF1ab/nsp6262P262PccCccT33B.1.177.450.001144
ORF1ab/nsp6262P262PccCccT33B.1.177.730.001699
ORF1ab/nsp6262P262PccCccT33B.1.2410.002435
ORF1ab/nsp6262P262PccCccT33B.1.36.170.001482
ORF1ab/nsp6262P262PccCccT33B.1.4590.012245
ORF1ab/nsp6262P262PccCccT33B.1.4710.008197
ORF1ab/nsp6262P262PccCccT23B.1.4990.002101
ORF1ab/nsp6262P262PccCccT33P.1.150.000697
ORF1ab/nsp6262P262PccCccT12AY.1060.000335
ORF1ab/nsp6262P262PccCccT22AY.160.000759
ORF1ab/nsp6262P262PccCccT12AY.29.10.000221
ORF1ab/nsp6262P262PccCccT22AY.3.10.000171
ORF1ab/nsp6262P262PccCccT22AY.320.001065
ORF1ab/nsp6262P262PccCccT22AY.350.000466
ORF1ab/nsp6262P262PccCccT22AY.360.000296
ORF1ab/nsp6262P262PccCccT22AY.370.000632
ORF1ab/nsp6262P262PccCccT22AY.380.000999
ORF1ab/nsp6262P262PccCccT22AY.4.2.10.000298
ORF1ab/nsp6262P262PccCccT22AY.46.50.000397
ORF1ab/nsp6262P262PccCccT12AY.550.000917
ORF1ab/nsp6262P262PccCccT22AY.630.000774
ORF1ab/nsp6262P262PccCccT22AY.740.000231
ORF1ab/nsp6262P262PccCccT12AY.90.000068
ORF1ab/nsp6262P262PccCccT12AY.990.001049
ORF1ab/nsp6262P262PccCccT22B.1.1.2140.000111
ORF1ab/nsp6262P262PccCccT22B.1.1.250.001137
ORF1ab/nsp6262P262PccCccT22B.1.1.2940.002532
ORF1ab/nsp6262P262PccCccT22B.1.1.2970.004474
ORF1ab/nsp6262P262PccCccT22B.1.1.3040.005618
ORF1ab/nsp6262P262PccCccT22B.1.1.4200.002012
ORF1ab/nsp6262P262PccCccT22B.1.1.5260.007092
ORF1ab/nsp6262P262PccCccT22B.1.1.610.017544
ORF1ab/nsp6262P262PccCccT22B.1.1110.00235
ORF1ab/nsp6262P262PccCccT22B.1.1260.002551
ORF1ab/nsp6262P262PccCccT22B.1.160.70.004158
ORF1ab/nsp6262P262PccCccT22B.1.177.60.001953
ORF1ab/nsp6262P262PccCccT12B.1.177.70.000165
ORF1ab/nsp6262P262PccCccT12B.1.3240.001605
ORF1ab/nsp6262P262PccCccT12B.1.351.30.000876
ORF1ab/nsp6262P262PccCccT12B.1.36.180.00042
ORF1ab/nsp6262P262PccCccT22B.1.3750.001639
ORF1ab/nsp6262P262PccCccT22B.1.390.007812
ORF1ab/nsp6262P262PccCccT22B.1.3990.003868
ORF1ab/nsp6262P262PccCccT22B.1.5440.012048
ORF1ab/nsp6262P262PccCccT22B.1.5820.000981
ORF1ab/nsp6262P262PccCccT22B.1.6090.000959
ORF1ab/nsp6262P262PccCccT22B.1.780.017094
ORF1ab/nsp6262P262PccCccT12B.60.00091
ORF1ab/nsp6262P262PccCccT22P.1.10.000635
ORF1ab/nsp6262P262PccCccT22P.1.70.000639
ORF1ab/nsp6262P262PccCccT11A.50.001923
ORF1ab/nsp6262P262PccCccT11AA.20.007692
ORF1ab/nsp6262P262PccCccT11AA.40.009091
ORF1ab/nsp6262P262PccCccT11AD.20.000219
ORF1ab/nsp6262P262PccCccT11AM.40.003571
ORF1ab/nsp6262P262PccCccT11AP.10.001502
ORF1ab/nsp6262P262PccCccT11AY.1050.000643
ORF1ab/nsp6262P262PccCccT11AY.1080.001103
ORF1ab/nsp6262P262PccCccT11AY.1100.000113
ORF1ab/nsp6262P262PccCccT11AY.1130.000142
ORF1ab/nsp6262P262PccCccT11AY.1140.000231
ORF1ab/nsp6262P262PccCccT11AY.120.2.10.000498
ORF1ab/nsp6262P262PccCccT11AY.300.000396
ORF1ab/nsp6262P262PccCccT11AY.39.1.10.000725
ORF1ab/nsp6262P262PccCccT11AY.4.10.000737
ORF1ab/nsp6262P262PccCccT11AY.4.40.000409
ORF1ab/nsp6262P262PccCccT11AY.4.50.000107
ORF1ab/nsp6262P262PccCccT11AY.400.000964
ORF1ab/nsp6262P262PccCccT11AY.46.20.000635
ORF1ab/nsp6262P262PccCccT11AY.5.20.002463
ORF1ab/nsp6262P262PccCccT11AY.5.30.000337
ORF1ab/nsp6262P262PccCccT11AY.5.40.000277
ORF1ab/nsp6262P262PccCccT11AY.570.000656
ORF1ab/nsp6262P262PccCccT11AY.590.00053
ORF1ab/nsp6262P262PccCccT11AY.600.000938
ORF1ab/nsp6262P262PccCccT11AY.640.000595
ORF1ab/nsp6262P262PccCccT11AY.690.000187
ORF1ab/nsp6262P262PccCccT11AY.70.000196
ORF1ab/nsp6262P262PccCccT11AY.7.10.000113
ORF1ab/nsp6262P262PccCccT11AY.820.001357
ORF1ab/nsp6262P262PccCccT11AY.880.000884
ORF1ab/nsp6262P262PccCccT11AY.940.000443
ORF1ab/nsp6262P262PccCccT11AZ.30.00152
ORF1ab/nsp6262P262PccCccT11B.1.1.100.001115
ORF1ab/nsp6262P262PccCccT11B.1.1.1140.066667
ORF1ab/nsp6262P262PccCccT11B.1.1.1410.002012
ORF1ab/nsp6262P262PccCccT11B.1.1.1570.000913
ORF1ab/nsp6262P262PccCccT11B.1.1.1610.003534
ORF1ab/nsp6262P262PccCccT11B.1.1.1860.003436
ORF1ab/nsp6262P262PccCccT11B.1.1.1890.001513
ORF1ab/nsp6262P262PccCccT11B.1.1.2160.00089
ORF1ab/nsp6262P262PccCccT11B.1.1.2510.007937
ORF1ab/nsp6262P262PccCccT11B.1.1.2540.011236
ORF1ab/nsp6262P262PccCccT11B.1.1.2750.011236
ORF1ab/nsp6262P262PccCccT11B.1.1.2840.000107
ORF1ab/nsp6262P262PccCccT11B.1.1.2880.001916
ORF1ab/nsp6262P262PccCccT11B.1.1.3170.000412
ORF1ab/nsp6262P262PccCccT11B.1.1.330.000421
ORF1ab/nsp6262P262PccCccT11B.1.1.3510.002793
ORF1ab/nsp6262P262PccCccT11B.1.1.3970.002252
ORF1ab/nsp6262P262PccCccT11B.1.1.3980.003226
ORF1ab/nsp6262P262PccCccT11B.1.1.4060.006494
ORF1ab/nsp6262P262PccCccT11B.1.1.4090.002833
ORF1ab/nsp6262P262PccCccT11B.1.1.4160.000905
ORF1ab/nsp6262P262PccCccT11B.1.1.4190.007407
ORF1ab/nsp6262P262PccCccT11B.1.1.4350.034483
ORF1ab/nsp6262P262PccCccT11B.1.1.440.00241
ORF1ab/nsp6262P262PccCccT11B.1.1.560.017857
ORF1ab/nsp6262P262PccCccT11B.1.1100.004525
ORF1ab/nsp6262P262PccCccT11B.1.1580.02381
ORF1ab/nsp6262P262PccCccT11B.1.1700.00431
ORF1ab/nsp6262P262PccCccT11B.1.177.190.001431
ORF1ab/nsp6262P262PccCccT11B.1.177.20.004545
ORF1ab/nsp6262P262PccCccT11B.1.177.200.001517
ORF1ab/nsp6262P262PccCccT11B.1.177.330.001645
ORF1ab/nsp6262P262PccCccT11B.1.177.460.000918
ORF1ab/nsp6262P262PccCccT11B.1.177.540.000606
ORF1ab/nsp6262P262PccCccT11B.1.177.570.000281
ORF1ab/nsp6262P262PccCccT11B.1.177.860.000183
ORF1ab/nsp6262P262PccCccT11B.1.1940.04
ORF1ab/nsp6262P262PccCccT11B.1.2100.002132
ORF1ab/nsp6262P262PccCccT11B.1.214.30.007143
ORF1ab/nsp6262P262PccCccT11B.1.221.10.002907
ORF1ab/nsp6262P262PccCccT11B.1.2390.001221
ORF1ab/nsp6262P262PccCccT11B.1.2500.014493
ORF1ab/nsp6262P262PccCccT11B.1.258.120.007874
ORF1ab/nsp6262P262PccCccT11B.1.258.20.004505
ORF1ab/nsp6262P262PccCccT11B.1.2600.003344
ORF1ab/nsp6262P262PccCccT11B.1.2890.00266
ORF1ab/nsp6262P262PccCccT11B.1.30.002618
ORF1ab/nsp6262P262PccCccT11B.1.3010.005917
ORF1ab/nsp6262P262PccCccT11B.1.3050.002151
ORF1ab/nsp6262P262PccCccT11B.1.3400.004292
ORF1ab/nsp6262P262PccCccT11B.1.36.350.002604
ORF1ab/nsp6262P262PccCccT11B.1.36.360.000602
ORF1ab/nsp6262P262PccCccT11B.1.3910.001127
ORF1ab/nsp6262P262PccCccT11B.1.3960.000706
ORF1ab/nsp6262P262PccCccT11B.1.4080.00369
ORF1ab/nsp6262P262PccCccT11B.1.4160.001269
ORF1ab/nsp6262P262PccCccT11B.1.4620.007246
ORF1ab/nsp6262P262PccCccT11B.1.4700.001404
ORF1ab/nsp6262P262PccCccT11B.1.4780.011765
ORF1ab/nsp6262P262PccCccT11B.1.5030.002488
ORF1ab/nsp6262P262PccCccT11B.1.5590.025
ORF1ab/nsp6262P262PccCccT11B.1.5600.00463
ORF1ab/nsp6262P262PccCccT11B.1.5610.000397
ORF1ab/nsp6262P262PccCccT11B.1.5660.019231
ORF1ab/nsp6262P262PccCccT11B.1.5670.003333
ORF1ab/nsp6262P262PccCccT11B.1.5680.001111
ORF1ab/nsp6262P262PccCccT11B.1.575.10.002439
ORF1ab/nsp6262P262PccCccT11B.1.5770.000687
ORF1ab/nsp6262P262PccCccT11B.1.5950.000261
ORF1ab/nsp6262P262PccCccT11B.1.6310.003367
ORF1ab/nsp6262P262PccCccT11B.40.002208
ORF1ab/nsp6262P262PccCccT11B.4.50.011905
ORF1ab/nsp6262P262PccCccT11C.390.018868
ORF1ab/nsp6262P262PccCccT11D.20.000075
ORF1ab/nsp6262P262PccCccT11P.1.100.000269
ORF1ab/nsp6262P262PccCccT11P.1.20.001156
ORF1ab/nsp6262P262PccCccT11P.30.001595
ORF1ab/nsp6262P262PccCccT11Q.10.000126
ORF1ab/nsp6262P262PccCccT11Q.40.000455
ORF1ab/nsp6262P262PccCccT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.