CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 262 & Codon = ccA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6262P262PP3831PsynccCccA122995480.044556511756-11758

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6262P262PccCccA54812299All0.000105
ORF1ab/nsp6262P262PccCccA984029B.1.1.70.000088
ORF1ab/nsp6262P262PccCccA1031063AY.40.00016
ORF1ab/nsp6262P262PccCccA23941B.1.1.700.007844
ORF1ab/nsp6262P262PccCccA25468B.1.617.20.000094
ORF1ab/nsp6262P262PccCccA2386P.10.000032
ORF1ab/nsp6262P262PccCccA11334AY.1030.000068
ORF1ab/nsp6262P262PccCccA11311B.1.20.000097
ORF1ab/nsp6262P262PccCccA9201B.10.000082
ORF1ab/nsp6262P262PccCccA6183AY.430.000027
ORF1ab/nsp6262P262PccCccA28179AY.250.000168
ORF1ab/nsp6262P262PccCccA59154AY.200.002293
ORF1ab/nsp6262P262PccCccA5152AY.440.00003
ORF1ab/nsp6262P262PccCccA1135B.1.1770.000013
ORF1ab/nsp6262P262PccCccA18125B.1.10.000327
ORF1ab/nsp6262P262PccCccA283AY.30.00002
ORF1ab/nsp6262P262PccCccA183B.1.3510.00003
ORF1ab/nsp6262P262PccCccA971AY.260.000255
ORF1ab/nsp6262P262PccCccA3861AY.290.000599
ORF1ab/nsp6262P262PccCccA759AY.470.000218
ORF1ab/nsp6262P262PccCccA541AY.1020.000133
ORF1ab/nsp6262P262PccCccA241AY.4.20.000043
ORF1ab/nsp6262P262PccCccA137AY.610.000105
ORF1ab/nsp6262P262PccCccA336AY.390.000074
ORF1ab/nsp6262P262PccCccA224Q.80.00033
ORF1ab/nsp6262P262PccCccA422AY.230.000279
ORF1ab/nsp6262P262PccCccA1822B.1.3110.004942
ORF1ab/nsp6262P262PccCccA422B.1.6210.000354
ORF1ab/nsp6262P262PccCccA119AY.1190.000035
ORF1ab/nsp6262P262PccCccA417AY.50.000083
ORF1ab/nsp6262P262PccCccA416AY.420.000161
ORF1ab/nsp6262P262PccCccA114P.1.140.000048
ORF1ab/nsp6262P262PccCccA113AY.450.000122
ORF1ab/nsp6262P262PccCccA112AY.460.000104
ORF1ab/nsp6262P262PccCccA29B.1.1.5190.000079
ORF1ab/nsp6262P262PccCccA18B.1.5960.000087
ORF1ab/nsp6262P262PccCccA67AY.46.40.000987
ORF1ab/nsp6262P262PccCccA16B.1.2340.000132
ORF1ab/nsp6262P262PccCccA15AY.340.000097
ORF1ab/nsp6262P262PccCccA15B0.000128
ORF1ab/nsp6262P262PccCccA14AY.1110.000183
ORF1ab/nsp6262P262PccCccA34B.1.1.3160.002775
ORF1ab/nsp6262P262PccCccA24B.1.6230.001073
ORF1ab/nsp6262P262PccCccA13A.2.50.000499
ORF1ab/nsp6262P262PccCccA13AY.920.000287
ORF1ab/nsp6262P262PccCccA13AY.980.000079
ORF1ab/nsp6262P262PccCccA13B.1.4990.00105
ORF1ab/nsp6262P262PccCccA12AY.1060.000335
ORF1ab/nsp6262P262PccCccA22AY.1070.000932
ORF1ab/nsp6262P262PccCccA12AY.29.10.000221
ORF1ab/nsp6262P262PccCccA12AY.550.000917
ORF1ab/nsp6262P262PccCccA12AY.90.000068
ORF1ab/nsp6262P262PccCccA12AY.990.001049
ORF1ab/nsp6262P262PccCccA12B.1.177.70.000165
ORF1ab/nsp6262P262PccCccA12B.1.3240.001605
ORF1ab/nsp6262P262PccCccA12B.1.351.30.000876
ORF1ab/nsp6262P262PccCccA12B.1.36.180.00042
ORF1ab/nsp6262P262PccCccA12B.60.00091
ORF1ab/nsp6262P262PccCccA11AW.10.003049
ORF1ab/nsp6262P262PccCccA11AY.1090.00074
ORF1ab/nsp6262P262PccCccA11AY.120.000316
ORF1ab/nsp6262P262PccCccA11B.1.1.1290.009174
ORF1ab/nsp6262P262PccCccA11B.1.177.120.000152
ORF1ab/nsp6262P262PccCccA11B.1.5800.004065
ORF1ab/nsp6262P262PccCccA11P.1.60.001946

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.