CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 261

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6261P261PP3830PsynccAccG3722280.61290311753-11755
ORF1ab/nsp6261P261PP3830PsynccAccT3721350.36290311753-11755
ORF1ab/nsp6261P261PP3830PsynccAccC37290.024193511753-11755
ORF1ab/nsp6261P261SP3830SnonsynCcaTca7878111753-11755
ORF1ab/nsp6261P261delP3830deldelCCA---2626111753-11755
ORF1ab/nsp6261P261LP3830LnonsyncCacTa1515111753-11755
ORF1ab/nsp6261P261TP3830TnonsynCcaAca1010111753-11755
ORF1ab/nsp6261P261QP3830QnonsyncCacAa66111753-11755
ORF1ab/nsp6261P261del2P3830del2delcCAc--530.611753-11755
ORF1ab/nsp6261P261del2P3830del2delCCa--a520.411753-11755
ORF1ab/nsp6261P261AP3830AnonsynCcaGca44111753-11755
ORF1ab/nsp6261P261del1P3830del1delCca-ca210.511753-11755
ORF1ab/nsp6261P261del1P3830del1delCCa-Ta210.511753-11755
ORF1ab/nsp6261P261HP3830HnonsyncCAcAC11111753-11755
ORF1ab/nsp6261P261VP3830VnonsynCCaGTa11111753-11755

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6261P261PccAccG228372All0.000044
ORF1ab/nsp6261P261PccAccT135372All0.000026
ORF1ab/nsp6261P261PccAccC9372All0.000002
ORF1ab/nsp6261P261SCcaTca7878All0.000015
ORF1ab/nsp6261P261PccAccT5555B.1.1.3471
ORF1ab/nsp6261P261PccAccG3848B.1.1.70.000034
ORF1ab/nsp6261P261PccAccT948B.1.1.70.000008
ORF1ab/nsp6261P261PccAccC148B.1.1.70.000001
ORF1ab/nsp6261P261PccAccG3540AY.40.000054
ORF1ab/nsp6261P261PccAccT540AY.40.000008
ORF1ab/nsp6261P261PccAccG3131B.1.1.5190.001231
ORF1ab/nsp6261P261SCcaTca2828B.1.1.70.000025
ORF1ab/nsp6261P261delCCA---2626All0.000005
ORF1ab/nsp6261P261PccAccG1923B.1.10.000345
ORF1ab/nsp6261P261PccAccT423B.1.10.000073
ORF1ab/nsp6261P261PccAccT1321B.1.617.20.000049
ORF1ab/nsp6261P261PccAccG621B.1.617.20.000023
ORF1ab/nsp6261P261PccAccC221B.1.617.20.000008
ORF1ab/nsp6261P261SCcaTca2020AY.30.000199
ORF1ab/nsp6261P261PccAccG1019B.10.000092
ORF1ab/nsp6261P261PccAccT719B.10.000064
ORF1ab/nsp6261P261PccAccC219B.10.000018
ORF1ab/nsp6261P261PccAccG1818B.1.20.000158
ORF1ab/nsp6261P261PccAccG916AY.1030.000056
ORF1ab/nsp6261P261PccAccT716AY.1030.000043
ORF1ab/nsp6261P261LcCacTa1515All0.000003
ORF1ab/nsp6261P261PccAccG811AY.250.000048
ORF1ab/nsp6261P261PccAccT311AY.250.000018
ORF1ab/nsp6261P261PccAccT711B.1.1770.000092
ORF1ab/nsp6261P261PccAccG411B.1.1770.000053
ORF1ab/nsp6261P261TCcaAca1010All0.000002
ORF1ab/nsp6261P261PccAccG1010AY.30.000099
ORF1ab/nsp6261P261PccAccG47AY.430.000018
ORF1ab/nsp6261P261PccAccT37AY.430.000013
ORF1ab/nsp6261P261PccAccT77B.1.177.600.001529
ORF1ab/nsp6261P261QcCacAa66All0.000001
ORF1ab/nsp6261P261del2cCAc--35All0.000001
ORF1ab/nsp6261P261del2CCa--a25All0
ORF1ab/nsp6261P261ACcaGca44All0.000001
ORF1ab/nsp6261P261SCcaTca44AY.250.000024
ORF1ab/nsp6261P261QcCacAa44B.10.000037
ORF1ab/nsp6261P261LcCacTa44B.10.000037
ORF1ab/nsp6261P261SCcaTca44B.10.000037
ORF1ab/nsp6261P261SCcaTca44B.1.10.000073
ORF1ab/nsp6261P261LcCacTa44B.1.1.70.000004
ORF1ab/nsp6261P261PccAccG33AY.1170.000254
ORF1ab/nsp6261P261PccAccG23AY.390.000049
ORF1ab/nsp6261P261PccAccC13AY.390.000025
ORF1ab/nsp6261P261delCCA---33B.10.000027
ORF1ab/nsp6261P261delCCA---33B.1.1.70.000003
ORF1ab/nsp6261P261del2cCAc--23B.1.1.70.000002
ORF1ab/nsp6261P261del2CCa--a13B.1.1.70.000001
ORF1ab/nsp6261P261SCcaTca33B.1.4220.002437
ORF1ab/nsp6261P261delCCA---33B.1.617.20.000011
ORF1ab/nsp6261P261TCcaAca220.111111
ORF1ab/nsp6261P261del1Cca-ca12All0
ORF1ab/nsp6261P261del1CCa-Ta12All0
ORF1ab/nsp6261P261PccAccG22AU.10.002532
ORF1ab/nsp6261P261SCcaTca22AY.40.000003
ORF1ab/nsp6261P261delCCA---22AY.40.000003
ORF1ab/nsp6261P261PccAccG22AY.420.00008
ORF1ab/nsp6261P261PccAccT12AY.440.000006
ORF1ab/nsp6261P261PccAccG12AY.440.000006
ORF1ab/nsp6261P261PccAccG22AY.470.000062
ORF1ab/nsp6261P261PccAccG22AY.930.000546
ORF1ab/nsp6261P261ACcaGca22B.10.000018
ORF1ab/nsp6261P261TCcaAca22B.10.000018
ORF1ab/nsp6261P261delCCA---22B.1.10.000036
ORF1ab/nsp6261P261PccAccG22B.1.1.3260.003521
ORF1ab/nsp6261P261LcCacTa22B.1.1770.000026
ORF1ab/nsp6261P261SCcaTca22B.1.20.000018
ORF1ab/nsp6261P261PccAccG22B.1.2210.000142
ORF1ab/nsp6261P261PccAccG12B.1.3510.00003
ORF1ab/nsp6261P261PccAccT12B.1.3510.00003
ORF1ab/nsp6261P261PccAccT22B.1.360.000292
ORF1ab/nsp6261P261PccAccG12B.1.5960.000087
ORF1ab/nsp6261P261PccAccT12B.1.5960.000087
ORF1ab/nsp6261P261PccAccT12B.1.90.006173
ORF1ab/nsp6261P261PccAccC12B.1.90.006173
ORF1ab/nsp6261P261SCcaTca22B.280.006557
ORF1ab/nsp6261P261LcCacTa11A0.000387
ORF1ab/nsp6261P261VCCaGTa11All0
ORF1ab/nsp6261P261HcCAcAC11All0
ORF1ab/nsp6261P261PccAccG11AY.1000.000046
ORF1ab/nsp6261P261SCcaTca11AY.1030.000006
ORF1ab/nsp6261P261PccAccC11AY.1100.000113
ORF1ab/nsp6261P261PccAccG11AY.1180.000063
ORF1ab/nsp6261P261PccAccT11AY.120.000316
ORF1ab/nsp6261P261PccAccT11AY.140.000088
ORF1ab/nsp6261P261PccAccG11AY.200.000039
ORF1ab/nsp6261P261delCCA---11AY.250.000006
ORF1ab/nsp6261P261PccAccG11AY.260.000028
ORF1ab/nsp6261P261PccAccT11AY.280.00189
ORF1ab/nsp6261P261PccAccG11AY.290.000016
ORF1ab/nsp6261P261SCcaTca11AY.340.000097
ORF1ab/nsp6261P261PccAccT11AY.34.10.00051
ORF1ab/nsp6261P261PccAccG11AY.39.10.00004
ORF1ab/nsp6261P261delCCA---11AY.430.000004
ORF1ab/nsp6261P261TCcaAca11AY.50.000021
ORF1ab/nsp6261P261PccAccG11AY.540.000095
ORF1ab/nsp6261P261LcCacTa11AY.540.000095
ORF1ab/nsp6261P261PccAccT11AY.610.000105
ORF1ab/nsp6261P261SCcaTca11AY.7.10.000113
ORF1ab/nsp6261P261TCcaAca11AY.740.000116
ORF1ab/nsp6261P261delCCA---11AY.750.000056
ORF1ab/nsp6261P261PccAccG11AY.980.000079
ORF1ab/nsp6261P261PccAccT11B0.000128
ORF1ab/nsp6261P261VCCaGTa11B.1.10.000018
ORF1ab/nsp6261P261LcCacTa11B.1.10.000018
ORF1ab/nsp6261P261PccAccG11B.1.1.1530.001095
ORF1ab/nsp6261P261del2CCa--a11B.1.1.3150.008475
ORF1ab/nsp6261P261PccAccG11B.1.1.3170.000412
ORF1ab/nsp6261P261PccAccG11B.1.1.4090.002833
ORF1ab/nsp6261P261ACcaGca11B.1.1.70.000001
ORF1ab/nsp6261P261del2cCAc--11B.1.1770.000013
ORF1ab/nsp6261P261delCCA---11B.1.177.730.000566
ORF1ab/nsp6261P261PccAccG11B.1.177.810.000189
ORF1ab/nsp6261P261delCCA---11B.1.177.90.001332
ORF1ab/nsp6261P261TCcaAca11B.1.20.000009
ORF1ab/nsp6261P261del1CCa-Ta11B.1.20.000009
ORF1ab/nsp6261P261delCCA---11B.1.20.000009
ORF1ab/nsp6261P261SCcaTca11B.1.2210.000071
ORF1ab/nsp6261P261PccAccT11B.1.2340.000132
ORF1ab/nsp6261P261PccAccT11B.1.2430.00007
ORF1ab/nsp6261P261LcCacTa11B.1.2430.00007
ORF1ab/nsp6261P261delCCA---11B.1.3510.00003
ORF1ab/nsp6261P261QcCacAa11B.1.3670.000792
ORF1ab/nsp6261P261TCcaAca11B.1.4160.001269
ORF1ab/nsp6261P261SCcaTca11B.1.4290.000024
ORF1ab/nsp6261P261PccAccG11B.1.5260.000024
ORF1ab/nsp6261P261delCCA---11B.1.5610.000397
ORF1ab/nsp6261P261delCCA---11B.1.5850.027778
ORF1ab/nsp6261P261PccAccT11B.1.5950.000261
ORF1ab/nsp6261P261QcCacAa11B.1.5960.000087
ORF1ab/nsp6261P261delCCA---11B.1.5960.000087
ORF1ab/nsp6261P261SCcaTca11B.1.6060.006024
ORF1ab/nsp6261P261TCcaAca11B.1.6090.000479
ORF1ab/nsp6261P261ACcaGca11B.1.6120.002653
ORF1ab/nsp6261P261HcCAcAC11B.1.617.20.000004
ORF1ab/nsp6261P261del1Cca-ca11B.1.617.20.000004
ORF1ab/nsp6261P261SCcaTca11B.1.6230.000536
ORF1ab/nsp6261P261PccAccG11B.230.002924
ORF1ab/nsp6261P261TCcaAca11B.230.002924
ORF1ab/nsp6261P261PccAccC11B.350.007812
ORF1ab/nsp6261P261PccAccG11B.400.000364
ORF1ab/nsp6261P261delCCA---11C.170.055556
ORF1ab/nsp6261P261PccAccG11C.180.002591
ORF1ab/nsp6261P261SCcaTca11C.36.30.000567
ORF1ab/nsp6261P261LcCacTa11D.20.000075
ORF1ab/nsp6261P261delCCA---11N.40.004255
ORF1ab/nsp6261P261SCcaTca11P.1.140.000048
ORF1ab/nsp6261P261delCCA---11Q.80.000165