CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 260 & Codon = ctT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6260L260LL3829LsynctCctT260224810.95349711750-11752

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6260L260LctCctT24812602All0.000475
ORF1ab/nsp6260L260LctCctT352352P.10.005545
ORF1ab/nsp6260L260LctCctT275276AY.40.000428
ORF1ab/nsp6260L260LctCctT265274B.1.1.70.000237
ORF1ab/nsp6260L260LctCctT222231B.1.4290.005223
ORF1ab/nsp6260L260LctCctT156156B.121
ORF1ab/nsp6260L260LctCctT103106B.1.20.000907
ORF1ab/nsp6260L260LctCctT8286AY.250.000493
ORF1ab/nsp6260L260LctCctT6278B.1.617.20.000233
ORF1ab/nsp6260L260LctCctT6565B.1.1.3180.019614
ORF1ab/nsp6260L260LctCctT5159B.10.000467
ORF1ab/nsp6260L260LctCctT5457AY.430.000239
ORF1ab/nsp6260L260LctCctT3150B.1.10.000562
ORF1ab/nsp6260L260LctCctT3539AY.440.000213
ORF1ab/nsp6260L260LctCctT3535AY.50.000723
ORF1ab/nsp6260L260LctCctT2433AY.1030.000149
ORF1ab/nsp6260L260LctCctT3232AY.260.000906
ORF1ab/nsp6260L260LctCctT3032AY.30.000298
ORF1ab/nsp6260L260LctCctT3030C.350.02322
ORF1ab/nsp6260L260LctCctT2929B.1.1770.000382
ORF1ab/nsp6260L260LctCctT2929P.1.70.009259
ORF1ab/nsp6260L260LctCctT2222B.1.2210.001563
ORF1ab/nsp6260L260LctCctT2121AY.1100.002366
ORF1ab/nsp6260L260LctCctT2020B.1.177.830.02963
ORF1ab/nsp6260L260LctCctT1819B.1.360.002626
ORF1ab/nsp6260L260LctCctT1517AY.470.000467
ORF1ab/nsp6260L260LctCctT1717AY.98.10.000823
ORF1ab/nsp6260L260LctCctT1515AY.420.000603
ORF1ab/nsp6260L260LctCctT1414B.1.1.2200.026022
ORF1ab/nsp6260L260LctCctT1313AY.1000.000598
ORF1ab/nsp6260L260LctCctT1313AY.200.000505
ORF1ab/nsp6260L260LctCctT1313B.1.1600.000405
ORF1ab/nsp6260L260LctCctT1313B.1.5950.003392
ORF1ab/nsp6260L260LctCctT1212AY.1180.000752
ORF1ab/nsp6260L260LctCctT1212AY.380.005991
ORF1ab/nsp6260L260LctCctT1212B.1.177.540.007277
ORF1ab/nsp6260L260LctCctT1111B.1.5260.000259
ORF1ab/nsp6260L260LctCctT1010B.1.258.30.01675
ORF1ab/nsp6260L260LctCctT29C.360.001821
ORF1ab/nsp6260L260LctCctT78B.1.6370.000512
ORF1ab/nsp6260L260LctCctT88P.1.120.003872
ORF1ab/nsp6260L260LctCctT67AY.290.000095
ORF1ab/nsp6260L260LctCctT77B.1.1.5190.000278
ORF1ab/nsp6260L260LctCctT77B.1.177.860.001284
ORF1ab/nsp6260L260LctCctT66AY.1190.000212
ORF1ab/nsp6260L260LctCctT66AY.4.20.00013
ORF1ab/nsp6260L260LctCctT55AY.90.000338
ORF1ab/nsp6260L260LctCctT55AY.9.20.000184
ORF1ab/nsp6260L260LctCctT55AY.99.20.000461
ORF1ab/nsp6260L260LctCctT45B.1.2430.000278
ORF1ab/nsp6260L260LctCctT55B.1.5250.000566
ORF1ab/nsp6260L260LctCctT35B.1.5960.000261
ORF1ab/nsp6260L260LctCctT55P.20.000933
ORF1ab/nsp6260L260LctCctT34AY.230.000209
ORF1ab/nsp6260L260LctCctT44AY.3.10.000341
ORF1ab/nsp6260L260LctCctT44AY.390.000099
ORF1ab/nsp6260L260LctCctT14AY.750.000056
ORF1ab/nsp6260L260LctCctT44B.1.2390.004884
ORF1ab/nsp6260L260LctCctT44B.1.3980.011905
ORF1ab/nsp6260L260LctCctT44B.1.4040.005208
ORF1ab/nsp6260L260LctCctT44B.1.617.10.000516
ORF1ab/nsp6260L260LctCctT44P.1.150.000929
ORF1ab/nsp6260L260LctCctT44Q.20.002454
ORF1ab/nsp6260L260LctCctT44Q.30.00058
ORF1ab/nsp6260L260LctCctT34Q.80.000495
ORF1ab/nsp6260L260LctCctT33A.2.50.001497
ORF1ab/nsp6260L260LctCctT33AY.360.000445
ORF1ab/nsp6260L260LctCctT33AY.39.10.000119
ORF1ab/nsp6260L260LctCctT33AY.450.000365
ORF1ab/nsp6260L260LctCctT33B.1.1.2840.000322
ORF1ab/nsp6260L260LctCctT33B.1.1.3150.025424
ORF1ab/nsp6260L260LctCctT33B.1.1.5230.004687
ORF1ab/nsp6260L260LctCctT33B.1.177.430.004431
ORF1ab/nsp6260L260LctCctT33B.1.177.570.000843
ORF1ab/nsp6260L260LctCctT33C.370.000348
ORF1ab/nsp6260L260LctCctT33Q.10.000379
ORF1ab/nsp6260L260LctCctT22AY.1020.000053
ORF1ab/nsp6260L260LctCctT22AY.1200.000074
ORF1ab/nsp6260L260LctCctT22AY.1210.000271
ORF1ab/nsp6260L260LctCctT22AY.140.000176
ORF1ab/nsp6260L260LctCctT12AY.330.000067
ORF1ab/nsp6260L260LctCctT22AY.46.60.000144
ORF1ab/nsp6260L260LctCctT22AY.60.000082
ORF1ab/nsp6260L260LctCctT22AY.620.000871
ORF1ab/nsp6260L260LctCctT22B0.000256
ORF1ab/nsp6260L260LctCctT22B.1.1.10.000653
ORF1ab/nsp6260L260LctCctT22B.1.1.1210.004854
ORF1ab/nsp6260L260LctCctT22B.1.1.330.000842
ORF1ab/nsp6260L260LctCctT22B.1.1.3330.002153
ORF1ab/nsp6260L260LctCctT22B.1.1.390.001019
ORF1ab/nsp6260L260LctCctT22B.1.1.3980.006452
ORF1ab/nsp6260L260LctCctT22B.1.160.280.005848
ORF1ab/nsp6260L260LctCctT22B.1.177.100.001756
ORF1ab/nsp6260L260LctCctT22B.1.2340.000264
ORF1ab/nsp6260L260LctCctT12B.1.2580.000067
ORF1ab/nsp6260L260LctCctT12B.1.258.170.000104
ORF1ab/nsp6260L260LctCctT22B.1.3510.000059
ORF1ab/nsp6260L260LctCctT22B.1.36.270.001527
ORF1ab/nsp6260L260LctCctT22B.1.4560.006536
ORF1ab/nsp6260L260LctCctT22B.1.466.20.000782
ORF1ab/nsp6260L260LctCctT22B.1.5750.000607
ORF1ab/nsp6260L260LctCctT22B.1.619.10.001283
ORF1ab/nsp6260L260LctCctT22B.1.6210.000177
ORF1ab/nsp6260L260LctCctT22D.20.00015
ORF1ab/nsp6260L260LctCctT22R.10.00018
ORF1ab/nsp6260L260LctCctT11A.2.5.20.001572
ORF1ab/nsp6260L260LctCctT11AM.40.003571
ORF1ab/nsp6260L260LctCctT11AY.1110.000183
ORF1ab/nsp6260L260LctCctT11AY.1160.000287
ORF1ab/nsp6260L260LctCctT11AY.1170.000085
ORF1ab/nsp6260L260LctCctT11AY.270.000065
ORF1ab/nsp6260L260LctCctT11AY.350.000233
ORF1ab/nsp6260L260LctCctT11AY.39.1.10.000725
ORF1ab/nsp6260L260LctCctT11AY.4.2.10.000149
ORF1ab/nsp6260L260LctCctT11AY.540.000095
ORF1ab/nsp6260L260LctCctT11AY.580.000907
ORF1ab/nsp6260L260LctCctT11AY.660.00107
ORF1ab/nsp6260L260LctCctT11AY.680.000274
ORF1ab/nsp6260L260LctCctT11AY.70.000196
ORF1ab/nsp6260L260LctCctT11AY.9.10.000084
ORF1ab/nsp6260L260LctCctT11AY.930.000273
ORF1ab/nsp6260L260LctCctT11AY.940.000443
ORF1ab/nsp6260L260LctCctT11B.1.1.1710.003676
ORF1ab/nsp6260L260LctCctT11B.1.1.2140.000055
ORF1ab/nsp6260L260LctCctT11B.1.1.2220.000204
ORF1ab/nsp6260L260LctCctT11B.1.1.270.00565
ORF1ab/nsp6260L260LctCctT11B.1.1.2720.005208
ORF1ab/nsp6260L260LctCctT11B.1.1.3070.002532
ORF1ab/nsp6260L260LctCctT11B.1.1.370.000193
ORF1ab/nsp6260L260LctCctT11B.1.1.3730.02381
ORF1ab/nsp6260L260LctCctT11B.1.1.500.000679
ORF1ab/nsp6260L260LctCctT11B.1.1.5210.005348
ORF1ab/nsp6260L260LctCctT11B.1.1.560.017857
ORF1ab/nsp6260L260LctCctT11B.1.1580.02381
ORF1ab/nsp6260L260LctCctT11B.1.160.150.00495
ORF1ab/nsp6260L260LctCctT11B.1.177.210.000076
ORF1ab/nsp6260L260LctCctT11B.1.177.600.000218
ORF1ab/nsp6260L260LctCctT11B.1.177.650.000665
ORF1ab/nsp6260L260LctCctT11B.1.177.870.000728
ORF1ab/nsp6260L260LctCctT11B.1.1890.004292
ORF1ab/nsp6260L260LctCctT11B.1.1920.009259
ORF1ab/nsp6260L260LctCctT11B.1.2360.002053
ORF1ab/nsp6260L260LctCctT11B.1.3150.006061
ORF1ab/nsp6260L260LctCctT11B.1.3480.018182
ORF1ab/nsp6260L260LctCctT11B.1.36.10.00114
ORF1ab/nsp6260L260LctCctT11B.1.3670.000792
ORF1ab/nsp6260L260LctCctT11B.1.4000.000429
ORF1ab/nsp6260L260LctCctT11B.1.4090.000781
ORF1ab/nsp6260L260LctCctT11B.1.4680.005714
ORF1ab/nsp6260L260LctCctT11B.1.4780.011765
ORF1ab/nsp6260L260LctCctT11B.1.4970.000315
ORF1ab/nsp6260L260LctCctT11B.1.5270.003704
ORF1ab/nsp6260L260LctCctT11B.1.5660.019231
ORF1ab/nsp6260L260LctCctT11B.1.5820.000491
ORF1ab/nsp6260L260LctCctT11B.1.5870.001898
ORF1ab/nsp6260L260LctCctT11B.1.6250.002353
ORF1ab/nsp6260L260LctCctT11B.1.6280.000352
ORF1ab/nsp6260L260LctCctT11B.290.003509
ORF1ab/nsp6260L260LctCctT11B.6.60.000889
ORF1ab/nsp6260L260LctCctT11P.1.170.000162
ORF1ab/nsp6260L260LctCctT11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.