CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 260 | L260L | L3829L | syn | ctC | ctT | 2602 | 2481 | 0.953497 | 11750-11752 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2481 | 2602 | All | 0.000475 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 352 | 352 | P.1 | 0.005545 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 275 | 276 | AY.4 | 0.000428 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 265 | 274 | B.1.1.7 | 0.000237 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 222 | 231 | B.1.429 | 0.005223 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 156 | 156 | B.12 | 1 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 103 | 106 | B.1.2 | 0.000907 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 82 | 86 | AY.25 | 0.000493 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 62 | 78 | B.1.617.2 | 0.000233 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 65 | 65 | B.1.1.318 | 0.019614 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 51 | 59 | B.1 | 0.000467 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 54 | 57 | AY.43 | 0.000239 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 31 | 50 | B.1.1 | 0.000562 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 35 | 39 | AY.44 | 0.000213 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 35 | 35 | AY.5 | 0.000723 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 24 | 33 | AY.103 | 0.000149 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 32 | 32 | AY.26 | 0.000906 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 30 | 32 | AY.3 | 0.000298 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 30 | 30 | C.35 | 0.02322 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 29 | 29 | B.1.177 | 0.000382 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 29 | 29 | P.1.7 | 0.009259 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 22 | 22 | B.1.221 | 0.001563 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 21 | 21 | AY.110 | 0.002366 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 20 | 20 | B.1.177.83 | 0.02963 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 18 | 19 | B.1.36 | 0.002626 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 15 | 17 | AY.47 | 0.000467 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 17 | 17 | AY.98.1 | 0.000823 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 14 | 14 | B.1.1.220 | 0.026022 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 13 | 13 | AY.20 | 0.000505 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 13 | 13 | B.1.160 | 0.000405 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 13 | 13 | B.1.595 | 0.003392 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 12 | 12 | AY.118 | 0.000752 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 12 | 12 | AY.38 | 0.005991 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 12 | 12 | B.1.177.54 | 0.007277 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 10 | 10 | B.1.258.3 | 0.01675 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 9 | C.36 | 0.001821 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 7 | 8 | B.1.637 | 0.000512 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 8 | 8 | P.1.12 | 0.003872 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 6 | 7 | AY.29 | 0.000095 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 4 | 5 | B.1.243 | 0.000278 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 5 | B.1.596 | 0.000261 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 4 | AY.23 | 0.000209 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 4 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 4 | 4 | B.1.239 | 0.004884 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 4 | 4 | B.1.398 | 0.011905 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 4 | 4 | B.1.404 | 0.005208 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 4 | 4 | Q.2 | 0.002454 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 4 | 4 | Q.3 | 0.00058 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 4 | Q.8 | 0.000495 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 3 | B.1.1.315 | 0.025424 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 3 | B.1.1.523 | 0.004687 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 3 | B.1.177.43 | 0.004431 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 2 | AY.33 | 0.000067 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.1.121 | 0.004854 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.1.333 | 0.002153 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.160.28 | 0.005848 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 2 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 2 | B.1.258.17 | 0.000104 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.1.272 | 0.005208 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.348 | 0.018182 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.478 | 0.011765 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp6 | 260 | L260L | ctC | ctT | 1 | 1 | W.3 | 0.005263 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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