CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 260 & Codon = cCc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6260L260PL3829PnonsyncTccCc564564111750-11752

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6260L260PcTccCc564564All0.000108
ORF1ab/nsp6260L260PcTccCc148148AY.40.00023
ORF1ab/nsp6260L260PcTccCc146146B.1.1.70.000131
ORF1ab/nsp6260L260PcTccCc7070AY.1000.00322
ORF1ab/nsp6260L260PcTccCc5151B.1.617.20.000192
ORF1ab/nsp6260L260PcTccCc1111B.1.4270.000555
ORF1ab/nsp6260L260PcTccCc1010AY.370.003161
ORF1ab/nsp6260L260PcTccCc99B.1.1770.000119
ORF1ab/nsp6260L260PcTccCc77AY.1020.000186
ORF1ab/nsp6260L260PcTccCc77P.10.00011
ORF1ab/nsp6260L260PcTccCc66AY.740.000694
ORF1ab/nsp6260L260PcTccCc66B.1.177.230.019417
ORF1ab/nsp6260L260PcTccCc66B.1.20.000053
ORF1ab/nsp6260L260PcTccCc66B.1.5650.004862
ORF1ab/nsp6260L260PcTccCc55B.1.2580.000333
ORF1ab/nsp6260L260PcTccCc44AY.470.000124
ORF1ab/nsp6260L260PcTccCc44AY.50.000083
ORF1ab/nsp6260L260PcTccCc44B.1.1.2140.000222
ORF1ab/nsp6260L260PcTccCc44B.1.5250.000453
ORF1ab/nsp6260L260PcTccCc44B.1.5960.000349
ORF1ab/nsp6260L260PcTccCc33AY.440.000018
ORF1ab/nsp6260L260PcTccCc33B.10.000027
ORF1ab/nsp6260L260PcTccCc33B.1.4290.000071
ORF1ab/nsp6260L260PcTccCc33B.1.5880.00273
ORF1ab/nsp6260L260PcTccCc33B.1.6210.000266
ORF1ab/nsp6260L260PcTccCc22AY.1030.000012
ORF1ab/nsp6260L260PcTccCc22AY.1190.000071
ORF1ab/nsp6260L260PcTccCc22AY.200.000078
ORF1ab/nsp6260L260PcTccCc22AY.250.000012
ORF1ab/nsp6260L260PcTccCc22AY.430.000009
ORF1ab/nsp6260L260PcTccCc22B.1.1.250.001137
ORF1ab/nsp6260L260PcTccCc22B.1.1.5190.000079
ORF1ab/nsp6260L260PcTccCc22B.1.2430.000139
ORF1ab/nsp6260L260PcTccCc22B.1.3510.000059
ORF1ab/nsp6260L260PcTccCc11A.40.012821
ORF1ab/nsp6260L260PcTccCc11AD.20.000219
ORF1ab/nsp6260L260PcTccCc11AY.20.000356
ORF1ab/nsp6260L260PcTccCc11AY.240.000431
ORF1ab/nsp6260L260PcTccCc11AY.30.00001
ORF1ab/nsp6260L260PcTccCc11AY.4.30.000842
ORF1ab/nsp6260L260PcTccCc11AY.450.000122
ORF1ab/nsp6260L260PcTccCc11AY.46.50.000198
ORF1ab/nsp6260L260PcTccCc11AY.7.20.000559
ORF1ab/nsp6260L260PcTccCc11B.1.10.000018
ORF1ab/nsp6260L260PcTccCc11B.1.1.3690.000446
ORF1ab/nsp6260L260PcTccCc11B.1.1.500.000679
ORF1ab/nsp6260L260PcTccCc11B.1.1.5150.02
ORF1ab/nsp6260L260PcTccCc11B.1.177.120.000152
ORF1ab/nsp6260L260PcTccCc11B.1.2380.014925
ORF1ab/nsp6260L260PcTccCc11B.1.2410.000812
ORF1ab/nsp6260L260PcTccCc11B.1.5260.000024
ORF1ab/nsp6260L260PcTccCc11B.1.5640.000426
ORF1ab/nsp6260L260PcTccCc11B.1.5750.000303
ORF1ab/nsp6260L260PcTccCc11B.400.000364
ORF1ab/nsp6260L260PcTccCc11D.20.000075
ORF1ab/nsp6260L260PcTccCc11P.1.10.000318
ORF1ab/nsp6260L260PcTccCc11P.1.150.000232