CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 260 | L260F | L3829F | nonsyn | Ctc | Ttc | 45203 | 45182 | 0.999535 | 11750-11752 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 45182 | 45203 | All | 0.008642 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 36142 | 36160 | B.1.1.7 | 0.032355 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1235 | 1236 | P.1 | 0.019456 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 828 | 828 | AY.4 | 0.001289 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 596 | 596 | B.1.351 | 0.017717 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 530 | 530 | Q.8 | 0.087401 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 308 | 308 | B.1.617.2 | 0.00116 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 293 | 293 | P.1.14 | 0.014006 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 229 | 229 | B.1.2 | 0.002016 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 225 | 227 | AY.103 | 0.001397 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 226 | 226 | AY.3 | 0.002248 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 213 | 213 | B.1.1 | 0.003864 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 184 | 184 | B.1.160 | 0.005739 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 179 | 179 | B.1 | 0.00164 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 166 | 166 | B.1.1.369 | 0.074074 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 147 | 147 | AY.5 | 0.003035 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 137 | 137 | AY.43 | 0.000607 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 127 | 127 | B.1.526 | 0.002985 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 125 | 125 | C.37 | 0.014508 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 123 | 123 | AY.26 | 0.003482 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 119 | 119 | Q.1 | 0.015033 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 112 | 112 | AY.44 | 0.000682 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 108 | 108 | AY.120.1 | 0.034671 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 103 | 103 | AY.14 | 0.009065 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 98 | 98 | P.1.17 | 0.015852 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 94 | 94 | AY.70 | 0.0196 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 80 | 80 | AY.39 | 0.001977 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 75 | 75 | B.1.177.21 | 0.005735 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 62 | 62 | B.1.177 | 0.000816 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 58 | 58 | AY.25 | 0.000349 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 57 | 57 | AY.61 | 0.005972 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 55 | 55 | AY.47 | 0.001711 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 55 | 55 | B.1.525 | 0.006224 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 54 | 54 | AY.12 | 0.017067 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 54 | 54 | AY.9.2 | 0.001983 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 52 | 52 | B.1.258.24 | 0.55914 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 48 | 48 | B.1.36.18 | 0.020168 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 44 | 44 | B.1.429 | 0.001035 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 44 | 44 | P.1.15 | 0.010223 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 42 | 42 | AY.102 | 0.001114 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 42 | 42 | AY.75 | 0.002353 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 42 | 42 | B.1.369 | 0.011979 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 41 | 41 | P.1.12 | 0.019845 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 40 | 40 | AY.29 | 0.000631 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 38 | 38 | AY.119 | 0.001342 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 35 | 35 | Q.3 | 0.005076 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 31 | 31 | B.1.497 | 0.009758 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 30 | 30 | B.1.427 | 0.001515 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 29 | 29 | B.1.177.6 | 0.02832 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 29 | 29 | B.1.416 | 0.036802 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 29 | 29 | B.1.621 | 0.002567 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 28 | 28 | AY.46 | 0.002914 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 28 | 28 | B.1.221 | 0.001989 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 25 | 25 | B.1.595 | 0.006524 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 25 | 25 | B.1.637 | 0.001827 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 23 | 23 | B.1.1.519 | 0.000913 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 22 | 22 | AY.16 | 0.008352 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 21 | 21 | AY.20 | 0.000816 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 21 | 21 | AY.4.2 | 0.000455 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 21 | 21 | AY.46.4 | 0.003455 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 21 | 21 | P.1.1 | 0.006671 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 20 | 20 | AY.117 | 0.00169 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 20 | 20 | B.1.258 | 0.001331 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 20 | 20 | B.1.470 | 0.02809 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 20 | 20 | P.1.16 | 0.007482 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 19 | 19 | A.23.1 | 0.01338 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 19 | 19 | AY.120 | 0.000706 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 19 | 19 | B.1.177.73 | 0.010759 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 18 | 18 | AY.99.2 | 0.001659 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 18 | 18 | B.1.438.1 | 0.001931 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 18 | 18 | P.1.7 | 0.005747 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 15 | 15 | AY.116.1 | 0.004671 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 15 | 15 | AY.37 | 0.004741 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 15 | 15 | B.1.1.207 | 0.01773 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 14 | 14 | AY.74 | 0.001619 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 14 | 14 | AY.9.1 | 0.001172 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 14 | 14 | B.1.214.2 | 0.008393 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 13 | 13 | A.29 | 0.069149 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 13 | 13 | AD.2 | 0.002847 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 13 | 13 | AY.13 | 0.002093 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 13 | 13 | AY.35 | 0.00303 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 13 | 13 | B.1.596 | 0.001133 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 13 | 13 | B.1.619.1 | 0.008339 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 12 | 12 | AY.1 | 0.004749 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 12 | 12 | AY.33 | 0.000801 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 11 | 11 | B.1.575 | 0.003337 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 10 | 10 | AY.15 | 0.022222 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 10 | 10 | AY.38 | 0.004993 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 10 | 10 | B.1.1.28 | 0.003112 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 10 | 10 | B.1.1.284 | 0.001074 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 10 | 10 | B.1.214.3 | 0.071429 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 10 | 10 | B.1.617.1 | 0.00129 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 10 | 10 | C.36.3 | 0.005672 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 10 | 10 | P.2 | 0.001866 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 10 | 10 | Q.2 | 0.006135 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 9 | 9 | AY.9 | 0.000608 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 9 | 9 | B | 0.00115 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 9 | 9 | B.1.422 | 0.007311 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 8 | 8 | B.1.1.136 | 0.170213 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 8 | 8 | B.1.177.79 | 0.018735 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 8 | 8 | B.1.543 | 0.08 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 8 | 8 | B.1.628 | 0.002819 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 8 | 8 | P.1.10 | 0.002156 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 7 | 7 | B.1.1.523 | 0.010937 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 7 | 7 | B.1.499 | 0.007353 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 7 | 7 | C.37.1 | 0.018325 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 7 | 7 | P.1.2 | 0.008092 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 6 | 6 | AY.53 | 0.001725 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 6 | 6 | B.1.1.37 | 0.001157 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 6 | 6 | B.1.1.372 | 0.004132 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 6 | 6 | B.1.177.7 | 0.000989 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 6 | 6 | B.1.240 | 0.001293 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 6 | 6 | B.1.351.3 | 0.005259 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 6 | 6 | B.1.634 | 0.020548 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | A.27 | 0.008278 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | AY.111 | 0.000916 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | AY.67 | 0.002321 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | B.1.1.279 | 0.005605 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | B.1.1.348 | 0.003981 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | B.1.177.16 | 0.003322 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | B.1.351.5 | 0.002998 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | B.1.36.1 | 0.005701 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | P.1.4 | 0.004883 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | AY.52 | 0.003257 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | B.1.267 | 0.074074 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | B.1.36.31 | 0.007005 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | B.1.409 | 0.003125 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | B.1.625 | 0.009412 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 4 | 4 | P.1.13 | 0.003594 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.51 | 0.002727 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | AY.96 | 0.006224 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | B.1.1.174 | 0.010135 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | B.1.177.38 | 0.03125 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | B.1.177.5 | 0.003727 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | B.1.36.7 | 0.012 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | B.1.605 | 0.017857 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | B.1.619 | 0.002613 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | P.1.9 | 0.014423 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | A | 0.000774 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | AP.1 | 0.003003 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.1.282 | 0.023256 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.177.23 | 0.006472 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.219 | 0.018868 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.298 | 0.004228 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.415.1 | 0.015152 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.540 | 0.019417 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | B.1.630 | 0.010471 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | P.7 | 0.008734 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 2 | 2 | U.2 | 0.017544 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.203 | 0.016949 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.424 | 0.045455 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.506 | 0.037037 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.514 | 0.038462 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.59 | 0.006494 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.177.74 | 0.015152 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.182 | 0.007246 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.258.5 | 0.008772 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.435 | 0.011364 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.607 | 0.052632 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.38 | 0.02381 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | P.1.11 | 0.010204 |
ORF1ab/nsp6 | 260 | L260F | Ctc | Ttc | 1 | 1 | P.1.6 | 0.001946 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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