CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 260

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp6	260	L260F	L3829F	nonsyn	Ctc	Ttc	45203	45182	0.999535	11750-11752
ORF1ab/nsp6	260	L260F	L3829F	nonsyn	CtC	TtT	45203	21	0.000464571	11750-11752
ORF1ab/nsp6	260	L260L	L3829L	syn	ctC	ctT	2602	2481	0.953497	11750-11752
ORF1ab/nsp6	260	L260L	L3829L	syn	ctC	ctA	2602	119	0.0457341	11750-11752
ORF1ab/nsp6	260	L260L	L3829L	syn	ctC	ctG	2602	2	0.000768639	11750-11752
ORF1ab/nsp6	260	L260P	L3829P	nonsyn	cTc	cCc	564	564	1	11750-11752
ORF1ab/nsp6	260	L260I	L3829I	nonsyn	Ctc	Atc	329	328	0.99696	11750-11752
ORF1ab/nsp6	260	L260I	L3829I	nonsyn	CtC	AtA	329	1	0.00303951	11750-11752
ORF1ab/nsp6	260	L260V	L3829V	nonsyn	Ctc	Gtc	87	86	0.988506	11750-11752
ORF1ab/nsp6	260	L260V	L3829V	nonsyn	CtC	GtA	87	1	0.0114943	11750-11752
ORF1ab/nsp6	260	L260H	L3829H	nonsyn	cTc	cAc	42	42	1	11750-11752
ORF1ab/nsp6	260	L260del	L3829del	del	CTC	---	28	28	1	11750-11752
ORF1ab/nsp6	260	L260R	L3829R	nonsyn	cTc	cGc	8	8	1	11750-11752
ORF1ab/nsp6	260	L260del1	L3829del1	del	ctC	ct-	7	5	0.714286	11750-11752
ORF1ab/nsp6	260	L260del1	L3829del1	del	cTc	c-c	7	1	0.142857	11750-11752
ORF1ab/nsp6	260	L260del1	L3829del1	del	Ctc	-tc	7	1	0.142857	11750-11752
ORF1ab/nsp6	260	L260S	L3829S	nonsyn	CTC	TCA	3	2	0.666667	11750-11752
ORF1ab/nsp6	260	L260S	L3829S	nonsyn	CTc	TCc	3	1	0.333333	11750-11752
ORF1ab/nsp6	260	L260Q	L3829Q	nonsyn	cTC	cAA	2	2	1	11750-11752
ORF1ab/nsp6	260	L260K	L3829K	nonsyn	CTC	AAA	1	1	1	11750-11752
ORF1ab/nsp6	260	L260E	L3829E	nonsyn	CTC	GAA	1	1	1	11750-11752

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp6	260	L260F	Ctc	Ttc	45182	45203	All	0.008642
ORF1ab/nsp6	260	L260F	CtC	TtT	21	45203	All	0.000004
ORF1ab/nsp6	260	L260F	Ctc	Ttc	36142	36160	B.1.1.7	0.032355
ORF1ab/nsp6	260	L260F	CtC	TtT	18	36160	B.1.1.7	0.000016
ORF1ab/nsp6	260	L260L	ctC	ctT	2481	2602	All	0.000475
ORF1ab/nsp6	260	L260L	ctC	ctA	119	2602	All	0.000023
ORF1ab/nsp6	260	L260L	ctC	ctG	2	2602	All	0
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1235	1236	P.1	0.019456
ORF1ab/nsp6	260	L260F	CtC	TtT	1	1236	P.1	0.000016
ORF1ab/nsp6	260	L260F	Ctc	Ttc	828	828	AY.4	0.001289
ORF1ab/nsp6	260	L260F	Ctc	Ttc	596	596	B.1.351	0.017717
ORF1ab/nsp6	260	L260P	cTc	cCc	564	564	All	0.000108
ORF1ab/nsp6	260	L260F	Ctc	Ttc	530	530	Q.8	0.087401
ORF1ab/nsp6	260	L260L	ctC	ctT	352	352	P.1	0.005545
ORF1ab/nsp6	260	L260I	Ctc	Atc	328	329	All	0.000063
ORF1ab/nsp6	260	L260I	CtC	AtA	1	329	All	0
ORF1ab/nsp6	260	L260F	Ctc	Ttc	308	308	B.1.617.2	0.00116
ORF1ab/nsp6	260	L260F	Ctc	Ttc	293	293	P.1.14	0.014006
ORF1ab/nsp6	260	L260L	ctC	ctT	275	276	AY.4	0.000428
ORF1ab/nsp6	260	L260L	ctC	ctA	1	276	AY.4	0.000002
ORF1ab/nsp6	260	L260L	ctC	ctT	265	274	B.1.1.7	0.000237
ORF1ab/nsp6	260	L260L	ctC	ctA	9	274	B.1.1.7	0.000008
ORF1ab/nsp6	260	L260L	ctC	ctT	222	231	B.1.429	0.005223
ORF1ab/nsp6	260	L260L	ctC	ctA	9	231	B.1.429	0.000212
ORF1ab/nsp6	260	L260F	Ctc	Ttc	229	229	B.1.2	0.002016
ORF1ab/nsp6	260	L260F	Ctc	Ttc	225	227	AY.103	0.001397
ORF1ab/nsp6	260	L260F	CtC	TtT	2	227	AY.103	0.000012
ORF1ab/nsp6	260	L260F	Ctc	Ttc	226	226	AY.3	0.002248
ORF1ab/nsp6	260	L260F	Ctc	Ttc	213	213	B.1.1	0.003864
ORF1ab/nsp6	260	L260F	Ctc	Ttc	184	184	B.1.160	0.005739
ORF1ab/nsp6	260	L260F	Ctc	Ttc	179	179	B.1	0.00164
ORF1ab/nsp6	260	L260F	Ctc	Ttc	166	166	B.1.1.369	0.074074
ORF1ab/nsp6	260	L260L	ctC	ctT	156	156	B.12	1
ORF1ab/nsp6	260	L260P	cTc	cCc	148	148	AY.4	0.00023
ORF1ab/nsp6	260	L260F	Ctc	Ttc	147	147	AY.5	0.003035
ORF1ab/nsp6	260	L260P	cTc	cCc	146	146	B.1.1.7	0.000131
ORF1ab/nsp6	260	L260F	Ctc	Ttc	137	137	AY.43	0.000607
ORF1ab/nsp6	260	L260I	Ctc	Atc	137	137	B.1.1.7	0.000123
ORF1ab/nsp6	260	L260F	Ctc	Ttc	127	127	B.1.526	0.002985
ORF1ab/nsp6	260	L260F	Ctc	Ttc	125	125	C.37	0.014508
ORF1ab/nsp6	260	L260F	Ctc	Ttc	123	123	AY.26	0.003482
ORF1ab/nsp6	260	L260F	Ctc	Ttc	119	119	Q.1	0.015033
ORF1ab/nsp6	260	L260F	Ctc	Ttc	112	112	AY.44	0.000682
ORF1ab/nsp6	260	L260F	Ctc	Ttc	108	108	AY.120.1	0.034671
ORF1ab/nsp6	260	L260L	ctC	ctT	103	106	B.1.2	0.000907
ORF1ab/nsp6	260	L260L	ctC	ctA	3	106	B.1.2	0.000026
ORF1ab/nsp6	260	L260F	Ctc	Ttc	103	103	AY.14	0.009065
ORF1ab/nsp6	260	L260F	Ctc	Ttc	98	98	P.1.17	0.015852
ORF1ab/nsp6	260	L260F	Ctc	Ttc	94	94	AY.70	0.0196
ORF1ab/nsp6	260	L260V	Ctc	Gtc	86	87	All	0.000016
ORF1ab/nsp6	260	L260V	CtC	GtA	1	87	All	0
ORF1ab/nsp6	260	L260L	ctC	ctT	82	86	AY.25	0.000493
ORF1ab/nsp6	260	L260L	ctC	ctA	4	86	AY.25	0.000024
ORF1ab/nsp6	260	L260F	Ctc	Ttc	80	80	AY.39	0.001977
ORF1ab/nsp6	260	L260L	ctC	ctT	62	78	B.1.617.2	0.000233
ORF1ab/nsp6	260	L260L	ctC	ctA	15	78	B.1.617.2	0.000056
ORF1ab/nsp6	260	L260L	ctC	ctG	1	78	B.1.617.2	0.000004
ORF1ab/nsp6	260	L260F	Ctc	Ttc	75	75	B.1.177.21	0.005735
ORF1ab/nsp6	260	L260P	cTc	cCc	70	70	AY.100	0.00322
ORF1ab/nsp6	260	L260L	ctC	ctT	65	65	B.1.1.318	0.019614
ORF1ab/nsp6	260	L260F	Ctc	Ttc	62	62	B.1.177	0.000816
ORF1ab/nsp6	260	L260L	ctC	ctT	51	59	B.1	0.000467
ORF1ab/nsp6	260	L260L	ctC	ctA	7	59	B.1	0.000064
ORF1ab/nsp6	260	L260L	ctC	ctG	1	59	B.1	0.000009
ORF1ab/nsp6	260	L260F	Ctc	Ttc	58	58	AY.25	0.000349
ORF1ab/nsp6	260	L260L	ctC	ctT	54	57	AY.43	0.000239
ORF1ab/nsp6	260	L260L	ctC	ctA	3	57	AY.43	0.000013
ORF1ab/nsp6	260	L260F	Ctc	Ttc	57	57	AY.61	0.005972
ORF1ab/nsp6	260	L260F	Ctc	Ttc	55	55	AY.47	0.001711
ORF1ab/nsp6	260	L260F	Ctc	Ttc	55	55	B.1.525	0.006224
ORF1ab/nsp6	260	L260F	Ctc	Ttc	54	54	AY.12	0.017067
ORF1ab/nsp6	260	L260V	Ctc	Gtc	54	54	AY.9	0.00365
ORF1ab/nsp6	260	L260F	Ctc	Ttc	54	54	AY.9.2	0.001983
ORF1ab/nsp6	260	L260F	Ctc	Ttc	52	52	B.1.258.24	0.55914
ORF1ab/nsp6	260	L260P	cTc	cCc	51	51	B.1.617.2	0.000192
ORF1ab/nsp6	260	L260L	ctC	ctT	31	50	B.1.1	0.000562
ORF1ab/nsp6	260	L260L	ctC	ctA	19	50	B.1.1	0.000345
ORF1ab/nsp6	260	L260F	Ctc	Ttc	48	48	B.1.36.18	0.020168
ORF1ab/nsp6	260	L260F	Ctc	Ttc	44	44	B.1.429	0.001035
ORF1ab/nsp6	260	L260F	Ctc	Ttc	44	44	P.1.15	0.010223
ORF1ab/nsp6	260	L260H	cTc	cAc	42	42	All	0.000008
ORF1ab/nsp6	260	L260F	Ctc	Ttc	42	42	AY.102	0.001114
ORF1ab/nsp6	260	L260F	Ctc	Ttc	42	42	AY.75	0.002353
ORF1ab/nsp6	260	L260F	Ctc	Ttc	42	42	B.1.369	0.011979
ORF1ab/nsp6	260	L260F	Ctc	Ttc	41	41	P.1.12	0.019845
ORF1ab/nsp6	260	L260F	Ctc	Ttc	40	40	AY.29	0.000631
ORF1ab/nsp6	260	L260L	ctC	ctT	35	39	AY.44	0.000213
ORF1ab/nsp6	260	L260L	ctC	ctA	4	39	AY.44	0.000024
ORF1ab/nsp6	260	L260F	Ctc	Ttc	38	38	AY.119	0.001342
ORF1ab/nsp6	260	L260L	ctC	ctT	35	35	AY.5	0.000723
ORF1ab/nsp6	260	L260F	Ctc	Ttc	35	35	Q.3	0.005076
ORF1ab/nsp6	260	L260L	ctC	ctT	24	33	AY.103	0.000149
ORF1ab/nsp6	260	L260L	ctC	ctA	9	33	AY.103	0.000056
ORF1ab/nsp6	260	L260L	ctC	ctT	32	32	AY.26	0.000906
ORF1ab/nsp6	260	L260L	ctC	ctT	30	32	AY.3	0.000298
ORF1ab/nsp6	260	L260L	ctC	ctA	2	32	AY.3	0.00002
ORF1ab/nsp6	260	L260F	Ctc	Ttc	31	31	B.1.497	0.009758
ORF1ab/nsp6	260	L260F	Ctc	Ttc	30	30	B.1.427	0.001515
ORF1ab/nsp6	260	L260L	ctC	ctT	30	30	C.35	0.02322
ORF1ab/nsp6	260	L260L	ctC	ctT	29	29	B.1.177	0.000382
ORF1ab/nsp6	260	L260F	Ctc	Ttc	29	29	B.1.177.6	0.02832
ORF1ab/nsp6	260	L260F	Ctc	Ttc	29	29	B.1.416	0.036802
ORF1ab/nsp6	260	L260F	Ctc	Ttc	29	29	B.1.621	0.002567
ORF1ab/nsp6	260	L260I	Ctc	Atc	29	29	P.1	0.000457
ORF1ab/nsp6	260	L260L	ctC	ctT	29	29	P.1.7	0.009259
ORF1ab/nsp6	260	L260del	CTC	---	28	28	All	0.000005
ORF1ab/nsp6	260	L260I	Ctc	Atc	28	28	AY.27	0.001812
ORF1ab/nsp6	260	L260F	Ctc	Ttc	28	28	AY.46	0.002914
ORF1ab/nsp6	260	L260F	Ctc	Ttc	28	28	B.1.221	0.001989
ORF1ab/nsp6	260	L260F	Ctc	Ttc	25	25	B.1.595	0.006524
ORF1ab/nsp6	260	L260F	Ctc	Ttc	25	25	B.1.637	0.001827
ORF1ab/nsp6	260	L260F	Ctc	Ttc	23	23	B.1.1.519	0.000913
ORF1ab/nsp6	260	L260F	Ctc	Ttc	22	22	AY.16	0.008352
ORF1ab/nsp6	260	L260L	ctC	ctT	22	22	B.1.221	0.001563
ORF1ab/nsp6	260	L260L	ctC	ctT	21	21	AY.110	0.002366
ORF1ab/nsp6	260	L260F	Ctc	Ttc	21	21	AY.20	0.000816
ORF1ab/nsp6	260	L260I	Ctc	Atc	21	21	AY.4	0.000033
ORF1ab/nsp6	260	L260F	Ctc	Ttc	21	21	AY.4.2	0.000455
ORF1ab/nsp6	260	L260F	Ctc	Ttc	21	21	AY.46.4	0.003455
ORF1ab/nsp6	260	L260F	Ctc	Ttc	21	21	P.1.1	0.006671
ORF1ab/nsp6	260	L260F	Ctc	Ttc	20	20	AY.117	0.00169
ORF1ab/nsp6	260	L260L	ctC	ctT	20	20	B.1.177.83	0.02963
ORF1ab/nsp6	260	L260F	Ctc	Ttc	20	20	B.1.258	0.001331
ORF1ab/nsp6	260	L260F	Ctc	Ttc	20	20	B.1.470	0.02809
ORF1ab/nsp6	260	L260F	Ctc	Ttc	20	20	P.1.16	0.007482
ORF1ab/nsp6	260	L260F	Ctc	Ttc	19	19	A.23.1	0.01338
ORF1ab/nsp6	260	L260F	Ctc	Ttc	19	19	AY.120	0.000706
ORF1ab/nsp6	260	L260I	Ctc	Atc	19	19	AY.25	0.000114
ORF1ab/nsp6	260	L260F	Ctc	Ttc	19	19	B.1.177.73	0.010759
ORF1ab/nsp6	260	L260L	ctC	ctT	18	19	B.1.36	0.002626
ORF1ab/nsp6	260	L260L	ctC	ctA	1	19	B.1.36	0.000146
ORF1ab/nsp6	260	L260F	Ctc	Ttc	18	18	AY.99.2	0.001659
ORF1ab/nsp6	260	L260F	Ctc	Ttc	18	18	B.1.438.1	0.001931
ORF1ab/nsp6	260	L260F	Ctc	Ttc	18	18	P.1.7	0.005747
ORF1ab/nsp6	260	L260L	ctC	ctT	15	17	AY.47	0.000467
ORF1ab/nsp6	260	L260L	ctC	ctA	2	17	AY.47	0.000062
ORF1ab/nsp6	260	L260L	ctC	ctT	17	17	AY.98.1	0.000823
ORF1ab/nsp6	260	L260I	Ctc	Atc	16	16	B.1.2	0.000141
ORF1ab/nsp6	260	L260F	Ctc	Ttc	15	15	AY.116.1	0.004671
ORF1ab/nsp6	260	L260F	Ctc	Ttc	15	15	AY.37	0.004741
ORF1ab/nsp6	260	L260L	ctC	ctT	15	15	AY.42	0.000603
ORF1ab/nsp6	260	L260F	Ctc	Ttc	15	15	B.1.1.207	0.01773
ORF1ab/nsp6	260	L260F	Ctc	Ttc	14	14	AY.74	0.001619
ORF1ab/nsp6	260	L260F	Ctc	Ttc	14	14	AY.9.1	0.001172
ORF1ab/nsp6	260	L260L	ctC	ctT	14	14	B.1.1.220	0.026022
ORF1ab/nsp6	260	L260H	cTc	cAc	14	14	B.1.1.7	0.000013
ORF1ab/nsp6	260	L260F	Ctc	Ttc	14	14	B.1.214.2	0.008393
ORF1ab/nsp6	260	L260F	Ctc	Ttc	14	14	B.1.243	0.000974
ORF1ab/nsp6	260	L260F	Ctc	Ttc	13	13	A.29	0.069149
ORF1ab/nsp6	260	L260F	Ctc	Ttc	13	13	AD.2	0.002847
ORF1ab/nsp6	260	L260L	ctC	ctT	13	13	AY.100	0.000598
ORF1ab/nsp6	260	L260F	Ctc	Ttc	13	13	AY.13	0.002093
ORF1ab/nsp6	260	L260L	ctC	ctT	13	13	AY.20	0.000505
ORF1ab/nsp6	260	L260F	Ctc	Ttc	13	13	AY.35	0.00303
ORF1ab/nsp6	260	L260L	ctC	ctT	13	13	B.1.160	0.000405
ORF1ab/nsp6	260	L260L	ctC	ctT	13	13	B.1.595	0.003392
ORF1ab/nsp6	260	L260F	Ctc	Ttc	13	13	B.1.596	0.001133
ORF1ab/nsp6	260	L260F	Ctc	Ttc	13	13	B.1.619.1	0.008339
ORF1ab/nsp6	260	L260F	Ctc	Ttc	12	12	AY.1	0.004749
ORF1ab/nsp6	260	L260L	ctC	ctT	12	12	AY.118	0.000752
ORF1ab/nsp6	260	L260F	Ctc	Ttc	12	12	AY.33	0.000801
ORF1ab/nsp6	260	L260L	ctC	ctT	12	12	AY.38	0.005991
ORF1ab/nsp6	260	L260H	cTc	cAc	12	12	AY.4	0.000019
ORF1ab/nsp6	260	L260L	ctC	ctT	12	12	B.1.177.54	0.007277
ORF1ab/nsp6	260	L260P	cTc	cCc	11	11	B.1.427	0.000555
ORF1ab/nsp6	260	L260L	ctC	ctT	11	11	B.1.526	0.000259
ORF1ab/nsp6	260	L260F	Ctc	Ttc	11	11	B.1.575	0.003337
ORF1ab/nsp6	260	L260F	Ctc	Ttc	10	10	AY.100	0.00046
ORF1ab/nsp6	260	L260F	Ctc	Ttc	10	10	AY.15	0.022222
ORF1ab/nsp6	260	L260P	cTc	cCc	10	10	AY.37	0.003161
ORF1ab/nsp6	260	L260F	Ctc	Ttc	10	10	AY.38	0.004993
ORF1ab/nsp6	260	L260F	Ctc	Ttc	10	10	B.1.1.214	0.000555
ORF1ab/nsp6	260	L260F	Ctc	Ttc	10	10	B.1.1.28	0.003112
ORF1ab/nsp6	260	L260F	Ctc	Ttc	10	10	B.1.1.284	0.001074
ORF1ab/nsp6	260	L260F	Ctc	Ttc	10	10	B.1.214.3	0.071429
ORF1ab/nsp6	260	L260L	ctC	ctT	10	10	B.1.258.3	0.01675
ORF1ab/nsp6	260	L260F	Ctc	Ttc	10	10	B.1.617.1	0.00129
ORF1ab/nsp6	260	L260F	Ctc	Ttc	10	10	C.36.3	0.005672
ORF1ab/nsp6	260	L260F	Ctc	Ttc	10	10	P.2	0.001866
ORF1ab/nsp6	260	L260F	Ctc	Ttc	10	10	Q.2	0.006135
ORF1ab/nsp6	260	L260F	Ctc	Ttc	9	9	AY.23	0.000628
ORF1ab/nsp6	260	L260F	Ctc	Ttc	9	9	AY.9	0.000608
ORF1ab/nsp6	260	L260F	Ctc	Ttc	9	9	B	0.00115
ORF1ab/nsp6	260	L260P	cTc	cCc	9	9	B.1.177	0.000119
ORF1ab/nsp6	260	L260F	Ctc	Ttc	9	9	B.1.422	0.007311
ORF1ab/nsp6	260	L260L	ctC	ctA	7	9	C.36	0.006375
ORF1ab/nsp6	260	L260L	ctC	ctT	2	9	C.36	0.001821
ORF1ab/nsp6	260	L260R	cTc	cGc	8	8	All	0.000002
ORF1ab/nsp6	260	L260F	Ctc	Ttc	8	8	AY.98.1	0.000387
ORF1ab/nsp6	260	L260F	Ctc	Ttc	8	8	B.1.1.136	0.170213
ORF1ab/nsp6	260	L260F	Ctc	Ttc	8	8	B.1.177.79	0.018735
ORF1ab/nsp6	260	L260F	Ctc	Ttc	8	8	B.1.543	0.08
ORF1ab/nsp6	260	L260I	Ctc	Atc	8	8	B.1.617.2	0.00003
ORF1ab/nsp6	260	L260F	Ctc	Ttc	8	8	B.1.628	0.002819
ORF1ab/nsp6	260	L260L	ctC	ctT	7	8	B.1.637	0.000512
ORF1ab/nsp6	260	L260L	ctC	ctA	1	8	B.1.637	0.000073
ORF1ab/nsp6	260	L260F	Ctc	Ttc	8	8	P.1.10	0.002156
ORF1ab/nsp6	260	L260L	ctC	ctT	8	8	P.1.12	0.003872
ORF1ab/nsp6	260	L260del1	ctC	ct-	5	7	All	0.000001
ORF1ab/nsp6	260	L260del1	cTc	c-c	1	7	All	0
ORF1ab/nsp6	260	L260del1	Ctc	-tc	1	7	All	0
ORF1ab/nsp6	260	L260P	cTc	cCc	7	7	AY.102	0.000186
ORF1ab/nsp6	260	L260L	ctC	ctT	6	7	AY.29	0.000095
ORF1ab/nsp6	260	L260L	ctC	ctA	1	7	AY.29	0.000016
ORF1ab/nsp6	260	L260F	Ctc	Ttc	7	7	AY.54	0.000667
ORF1ab/nsp6	260	L260L	ctC	ctT	7	7	B.1.1.519	0.000278
ORF1ab/nsp6	260	L260F	Ctc	Ttc	7	7	B.1.1.523	0.010937
ORF1ab/nsp6	260	L260L	ctC	ctT	7	7	B.1.177.86	0.001284
ORF1ab/nsp6	260	L260F	Ctc	Ttc	7	7	B.1.499	0.007353
ORF1ab/nsp6	260	L260F	Ctc	Ttc	7	7	C.37.1	0.018325
ORF1ab/nsp6	260	L260F	Ctc	Ttc	7	7	D.2	0.000525
ORF1ab/nsp6	260	L260P	cTc	cCc	7	7	P.1	0.00011
ORF1ab/nsp6	260	L260I	Ctc	Atc	7	7	P.1.12	0.003388
ORF1ab/nsp6	260	L260F	Ctc	Ttc	7	7	P.1.2	0.008092
ORF1ab/nsp6	260	L260L	ctC	ctT	6	6	AY.119	0.000212
ORF1ab/nsp6	260	L260F	Ctc	Ttc	6	6	AY.3.1	0.000512
ORF1ab/nsp6	260	L260L	ctC	ctT	6	6	AY.4.2	0.00013
ORF1ab/nsp6	260	L260F	Ctc	Ttc	6	6	AY.53	0.001725
ORF1ab/nsp6	260	L260P	cTc	cCc	6	6	AY.74	0.000694
ORF1ab/nsp6	260	L260F	Ctc	Ttc	6	6	B.1.1.37	0.001157
ORF1ab/nsp6	260	L260F	Ctc	Ttc	6	6	B.1.1.372	0.004132
ORF1ab/nsp6	260	L260V	Ctc	Gtc	6	6	B.1.1.434	0.002091
ORF1ab/nsp6	260	L260V	Ctc	Gtc	6	6	B.1.1.7	0.000005
ORF1ab/nsp6	260	L260P	cTc	cCc	6	6	B.1.177.23	0.019417
ORF1ab/nsp6	260	L260F	Ctc	Ttc	6	6	B.1.177.7	0.000989
ORF1ab/nsp6	260	L260P	cTc	cCc	6	6	B.1.2	0.000053
ORF1ab/nsp6	260	L260F	Ctc	Ttc	6	6	B.1.240	0.001293
ORF1ab/nsp6	260	L260F	Ctc	Ttc	6	6	B.1.258.17	0.000624
ORF1ab/nsp6	260	L260F	Ctc	Ttc	6	6	B.1.351.3	0.005259
ORF1ab/nsp6	260	L260P	cTc	cCc	6	6	B.1.565	0.004862
ORF1ab/nsp6	260	L260F	Ctc	Ttc	6	6	B.1.634	0.020548
ORF1ab/nsp6	260	L260I	Ctc	Atc	6	6	P.1.15	0.001394
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	A.27	0.008278
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	AY.111	0.000916
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	AY.24	0.002155
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	AY.39.1	0.000198
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	AY.42	0.000201
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	AY.45	0.000608
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	AY.67	0.002321
ORF1ab/nsp6	260	L260L	ctC	ctT	5	5	AY.9	0.000338
ORF1ab/nsp6	260	L260L	ctC	ctT	5	5	AY.9.2	0.000184
ORF1ab/nsp6	260	L260L	ctC	ctT	5	5	AY.99.2	0.000461
ORF1ab/nsp6	260	L260I	Ctc	Atc	5	5	B.1	0.000046
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	B.1.1.279	0.005605
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	B.1.1.318	0.001509
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	B.1.1.348	0.003981
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	B.1.1.434	0.001743
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	B.1.177.16	0.003322
ORF1ab/nsp6	260	L260L	ctC	ctT	4	5	B.1.243	0.000278
ORF1ab/nsp6	260	L260L	ctC	ctA	1	5	B.1.243	0.00007
ORF1ab/nsp6	260	L260P	cTc	cCc	5	5	B.1.258	0.000333
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	B.1.351.5	0.002998
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	B.1.36	0.00073
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	B.1.36.1	0.005701
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	B.1.36.29	0.002587
ORF1ab/nsp6	260	L260L	ctC	ctT	5	5	B.1.525	0.000566
ORF1ab/nsp6	260	L260L	ctC	ctT	3	5	B.1.596	0.000261
ORF1ab/nsp6	260	L260L	ctC	ctA	2	5	B.1.596	0.000174
ORF1ab/nsp6	260	L260V	Ctc	Gtc	5	5	B.1.617.2	0.000019
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	P.1.4	0.004883
ORF1ab/nsp6	260	L260L	ctC	ctT	5	5	P.2	0.000933
ORF1ab/nsp6	260	L260I	Ctc	Atc	5	5	Q.8	0.000825
ORF1ab/nsp6	260	L260F	Ctc	Ttc	5	5	R.1	0.00045
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	AY.113	0.00057
ORF1ab/nsp6	260	L260I	Ctc	Atc	4	4	AY.13	0.000644
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	AY.16.1	0.00188
ORF1ab/nsp6	260	L260L	ctC	ctT	3	4	AY.23	0.000209
ORF1ab/nsp6	260	L260L	ctC	ctA	1	4	AY.23	0.00007
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	AY.27	0.000259
ORF1ab/nsp6	260	L260L	ctC	ctT	4	4	AY.3.1	0.000341
ORF1ab/nsp6	260	L260L	ctC	ctT	4	4	AY.39	0.000099
ORF1ab/nsp6	260	L260V	Ctc	Gtc	4	4	AY.4	0.000006
ORF1ab/nsp6	260	L260I	Ctc	Atc	4	4	AY.42	0.000161
ORF1ab/nsp6	260	L260P	cTc	cCc	4	4	AY.47	0.000124
ORF1ab/nsp6	260	L260P	cTc	cCc	4	4	AY.5	0.000083
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	AY.52	0.003257
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	AY.6	0.000165
ORF1ab/nsp6	260	L260L	ctC	ctA	3	4	AY.75	0.000168
ORF1ab/nsp6	260	L260L	ctC	ctT	1	4	AY.75	0.000056
ORF1ab/nsp6	260	L260I	Ctc	Atc	4	4	AY.98	0.000316
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	AY.98	0.000316
ORF1ab/nsp6	260	L260P	cTc	cCc	4	4	B.1.1.214	0.000222
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	B.1.1.306	0.001754
ORF1ab/nsp6	260	L260del	CTC	---	4	4	B.1.1.7	0.000004
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	B.1.177.44	0.002076
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	B.1.234	0.000528
ORF1ab/nsp6	260	L260L	ctC	ctT	4	4	B.1.239	0.004884
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	B.1.267	0.074074
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	B.1.36.31	0.007005
ORF1ab/nsp6	260	L260L	ctC	ctT	4	4	B.1.398	0.011905
ORF1ab/nsp6	260	L260L	ctC	ctT	4	4	B.1.404	0.005208
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	B.1.409	0.003125
ORF1ab/nsp6	260	L260P	cTc	cCc	4	4	B.1.525	0.000453
ORF1ab/nsp6	260	L260H	cTc	cAc	4	4	B.1.526	0.000094
ORF1ab/nsp6	260	L260I	Ctc	Atc	4	4	B.1.526	0.000094
ORF1ab/nsp6	260	L260P	cTc	cCc	4	4	B.1.596	0.000349
ORF1ab/nsp6	260	L260L	ctC	ctT	4	4	B.1.617.1	0.000516
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	B.1.625	0.009412
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	C.36	0.003643
ORF1ab/nsp6	260	L260F	Ctc	Ttc	4	4	P.1.13	0.003594
ORF1ab/nsp6	260	L260L	ctC	ctT	4	4	P.1.15	0.000929
ORF1ab/nsp6	260	L260L	ctC	ctT	4	4	Q.2	0.002454
ORF1ab/nsp6	260	L260L	ctC	ctT	4	4	Q.3	0.00058
ORF1ab/nsp6	260	L260L	ctC	ctT	3	4	Q.8	0.000495
ORF1ab/nsp6	260	L260L	ctC	ctA	1	4	Q.8	0.000165
ORF1ab/nsp6	260	L260L	ctC	ctT	3	3	A.2.5	0.001497
ORF1ab/nsp6	260	L260S	CTC	TCA	2	3	All	0
ORF1ab/nsp6	260	L260S	CTc	TCc	1	3	All	0
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.110	0.000338
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.116	0.00086
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.118	0.000188
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.121	0.000406
ORF1ab/nsp6	260	L260I	Ctc	Atc	3	3	AY.29	0.000047
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.32	0.001597
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.34	0.000291
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.36	0.000445
ORF1ab/nsp6	260	L260L	ctC	ctT	3	3	AY.36	0.000445
ORF1ab/nsp6	260	L260L	ctC	ctT	3	3	AY.39.1	0.000119
ORF1ab/nsp6	260	L260P	cTc	cCc	3	3	AY.44	0.000018
ORF1ab/nsp6	260	L260L	ctC	ctT	3	3	AY.45	0.000365
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.46.6	0.000217
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.48	0.001395
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.51	0.002727
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.57	0.001969
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.58	0.002722
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.69	0.00056
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.7	0.000588
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.75.1	0.000541
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.84	0.001312
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.92	0.000862
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	AY.96	0.006224
ORF1ab/nsp6	260	L260del	CTC	---	3	3	B.1	0.000027
ORF1ab/nsp6	260	L260P	cTc	cCc	3	3	B.1	0.000027
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	B.1.1.174	0.010135
ORF1ab/nsp6	260	L260L	ctC	ctT	3	3	B.1.1.284	0.000322
ORF1ab/nsp6	260	L260L	ctC	ctT	3	3	B.1.1.315	0.025424
ORF1ab/nsp6	260	L260L	ctC	ctT	3	3	B.1.1.523	0.004687
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	B.1.177.38	0.03125
ORF1ab/nsp6	260	L260L	ctC	ctT	3	3	B.1.177.43	0.004431
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	B.1.177.5	0.003727
ORF1ab/nsp6	260	L260L	ctC	ctT	3	3	B.1.177.57	0.000843
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	B.1.177.81	0.000568
ORF1ab/nsp6	260	L260I	Ctc	Atc	3	3	B.1.221	0.000213
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	B.1.241	0.002435
ORF1ab/nsp6	260	L260H	cTc	cAc	3	3	B.1.324	0.004815
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	B.1.351.2	0.000908
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	B.1.36.7	0.012
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	B.1.396	0.002117
ORF1ab/nsp6	260	L260P	cTc	cCc	3	3	B.1.429	0.000071
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	B.1.466.2	0.001174
ORF1ab/nsp6	260	L260P	cTc	cCc	3	3	B.1.588	0.00273
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	B.1.605	0.017857
ORF1ab/nsp6	260	L260R	cTc	cGc	3	3	B.1.617.2	0.000011
ORF1ab/nsp6	260	L260del	CTC	---	3	3	B.1.617.2	0.000011
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	B.1.619	0.002613
ORF1ab/nsp6	260	L260P	cTc	cCc	3	3	B.1.621	0.000266
ORF1ab/nsp6	260	L260L	ctC	ctA	3	3	B.3	0.002492
ORF1ab/nsp6	260	L260L	ctC	ctT	3	3	C.37	0.000348
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	P.1.9	0.014423
ORF1ab/nsp6	260	L260L	ctC	ctT	3	3	Q.1	0.000379
ORF1ab/nsp6	260	L260F	Ctc	Ttc	3	3	Q.4	0.001364
ORF1ab/nsp6	260	L260S	CTC	TCA	2	2		0.111111
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	A	0.000774
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	A.1	0.000564
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	A.2.5	0.000998
ORF1ab/nsp6	260	L260Q	cTC	cAA	2	2	All	0
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	AP.1	0.003003
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	AY.102	0.000053
ORF1ab/nsp6	260	L260P	cTc	cCc	2	2	AY.103	0.000012
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	AY.114	0.000462
ORF1ab/nsp6	260	L260P	cTc	cCc	2	2	AY.119	0.000071
ORF1ab/nsp6	260	L260I	Ctc	Atc	2	2	AY.120	0.000074
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	AY.120	0.000074
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	AY.121	0.000271
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	AY.14	0.000176
ORF1ab/nsp6	260	L260P	cTc	cCc	2	2	AY.20	0.000078
ORF1ab/nsp6	260	L260P	cTc	cCc	2	2	AY.25	0.000012
ORF1ab/nsp6	260	L260I	Ctc	Atc	2	2	AY.33	0.000134
ORF1ab/nsp6	260	L260L	ctC	ctT	1	2	AY.33	0.000067
ORF1ab/nsp6	260	L260L	ctC	ctA	1	2	AY.33	0.000067
ORF1ab/nsp6	260	L260del	CTC	---	2	2	AY.4	0.000003
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	AY.4.2.1	0.000298
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	AY.4.5	0.000215
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	AY.41	0.000588
ORF1ab/nsp6	260	L260I	Ctc	Atc	2	2	AY.43	0.000009
ORF1ab/nsp6	260	L260P	cTc	cCc	2	2	AY.43	0.000009
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	AY.46.3	0.001867
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	AY.46.6	0.000144
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	AY.5.4	0.000553
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	AY.6	0.000082
ORF1ab/nsp6	260	L260L	ctC	ctA	2	2	AY.61	0.00021
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	AY.62	0.000871
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	AY.78	0.003082
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	AY.85	0.000854
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B	0.000256
ORF1ab/nsp6	260	L260del	CTC	---	2	2	B.1.1	0.000036
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	2	B.1.1	0.000018
ORF1ab/nsp6	260	L260I	CtC	AtA	1	2	B.1.1	0.000018
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.1.1	0.000653
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.1.121	0.004854
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.1.161	0.007067
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.1.170	0.002494
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.1.176	0.000879
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.1.25	0.001137
ORF1ab/nsp6	260	L260P	cTc	cCc	2	2	B.1.1.25	0.001137
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.1.282	0.023256
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.1.311	0.000716
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.1.33	0.000842
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.1.333	0.002153
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.1.39	0.001019
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.1.398	0.006452
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.1.409	0.005666
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.1.50	0.001358
ORF1ab/nsp6	260	L260P	cTc	cCc	2	2	B.1.1.519	0.000079
ORF1ab/nsp6	260	L260Q	cTC	cAA	2	2	B.1.1.7	0.000002
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.1.70	0.000682
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.160.28	0.005848
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.177.10	0.001756
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.177.17	0.001642
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.177.23	0.006472
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.177.33	0.003289
ORF1ab/nsp6	260	L260L	ctC	ctA	2	2	B.1.177.69	0.002967
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.177.75	0.002081
ORF1ab/nsp6	260	L260H	cTc	cAc	2	2	B.1.2	0.000018
ORF1ab/nsp6	260	L260del1	ctC	ct-	2	2	B.1.2	0.000018
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.219	0.018868
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.234	0.000264
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.236	0.004107
ORF1ab/nsp6	260	L260P	cTc	cCc	2	2	B.1.243	0.000139
ORF1ab/nsp6	260	L260I	Ctc	Atc	2	2	B.1.258	0.000133
ORF1ab/nsp6	260	L260L	ctC	ctT	1	2	B.1.258	0.000067
ORF1ab/nsp6	260	L260L	ctC	ctA	1	2	B.1.258	0.000067
ORF1ab/nsp6	260	L260L	ctC	ctT	1	2	B.1.258.17	0.000104
ORF1ab/nsp6	260	L260L	ctC	ctA	1	2	B.1.258.17	0.000104
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.298	0.004228
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.311	0.000549
ORF1ab/nsp6	260	L260P	cTc	cCc	2	2	B.1.351	0.000059
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.351	0.000059
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.36.27	0.001527
ORF1ab/nsp6	260	L260I	Ctc	Atc	2	2	B.1.36.29	0.001035
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.367	0.001585
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.415.1	0.015152
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.456	0.006536
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.462	0.014493
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.466.2	0.000782
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.540	0.019417
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.575	0.000607
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.576	0.001813
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.582	0.000981
ORF1ab/nsp6	260	L260H	cTc	cAc	2	2	B.1.617.2	0.000008
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.619.1	0.001283
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	B.1.621	0.000177
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.623	0.001073
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.627	0.00404
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	B.1.630	0.010471
ORF1ab/nsp6	260	L260V	Ctc	Gtc	2	2	D.2	0.00015
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	D.2	0.00015
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	N.4	0.008511
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	P.7	0.008734
ORF1ab/nsp6	260	L260L	ctC	ctT	2	2	R.1	0.00018
ORF1ab/nsp6	260	L260F	Ctc	Ttc	2	2	U.2	0.017544
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	A.2	0.000662
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	A.2.5.2	0.001572
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	A.2.5.2	0.001572
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	A.25	0.018182
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	A.4	0.012821
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	AD.2	0.000219
ORF1ab/nsp6	260	L260K	CTC	AAA	1	1	All	0
ORF1ab/nsp6	260	L260E	CTC	GAA	1	1	All	0
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AM.4	0.003571
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AU.2	0.002421
ORF1ab/nsp6	260	L260V	Ctc	Gtc	1	1	AY.102	0.000027
ORF1ab/nsp6	260	L260V	Ctc	Gtc	1	1	AY.103	0.000006
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.106	0.000335
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.107	0.000466
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.111	0.000183
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.116	0.000287
ORF1ab/nsp6	260	L260V	Ctc	Gtc	1	1	AY.116	0.000287
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.117	0.000085
ORF1ab/nsp6	260	L260L	ctC	ctA	1	1	AY.16.1	0.00047
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	AY.2	0.000356
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	AY.20	0.000039
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	AY.24	0.000431
ORF1ab/nsp6	260	L260del	CTC	---	1	1	AY.25	0.000006
ORF1ab/nsp6	260	L260V	Ctc	Gtc	1	1	AY.25	0.000006
ORF1ab/nsp6	260	L260R	cTc	cGc	1	1	AY.25	0.000006
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.27	0.000065
ORF1ab/nsp6	260	L260R	cTc	cGc	1	1	AY.27	0.000065
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.29.1	0.000221
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	AY.3	0.00001
ORF1ab/nsp6	260	L260V	Ctc	Gtc	1	1	AY.3	0.00001
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	AY.3.1	0.000085
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.30	0.000396
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.34.1	0.00051
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.35	0.000233
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.39.1.1	0.000725
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.4.2.1	0.000149
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	AY.4.3	0.000842
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.4.4	0.000409
ORF1ab/nsp6	260	L260L	ctC	ctA	1	1	AY.4.5	0.000107
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.40	0.000964
ORF1ab/nsp6	260	L260H	cTc	cAc	1	1	AY.43	0.000004
ORF1ab/nsp6	260	L260del	CTC	---	1	1	AY.43	0.000004
ORF1ab/nsp6	260	L260del1	ctC	ct-	1	1	AY.44	0.000006
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	AY.44	0.000006
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	AY.45	0.000122
ORF1ab/nsp6	260	L260del1	cTc	c-c	1	1	AY.46.2	0.000635
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	AY.46.5	0.000198
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.5.2	0.002463
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.5.3	0.000337
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.50	0.000799
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.54	0.000095
ORF1ab/nsp6	260	L260V	Ctc	Gtc	1	1	AY.54	0.000095
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.58	0.000907
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.59	0.00053
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.62	0.000436
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.63	0.000387
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.65	0.000533
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.66	0.00107
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.68	0.000274
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.68	0.000274
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.7	0.000196
ORF1ab/nsp6	260	L260V	Ctc	Gtc	1	1	AY.7.1	0.000113
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.7.2	0.000559
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	AY.7.2	0.000559
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.71	0.000475
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	AY.71	0.000475
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.73	0.000665
ORF1ab/nsp6	260	L260del	CTC	---	1	1	AY.75	0.000056
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.79	0.001211
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.83	0.001724
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.87	0.000833
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.88	0.000884
ORF1ab/nsp6	260	L260H	cTc	cAc	1	1	AY.9	0.000068
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.9.1	0.000084
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.9.2.1	0.001976
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.93	0.000273
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.94	0.000443
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	AY.94	0.000443
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.95	0.000761
ORF1ab/nsp6	260	L260del1	ctC	ct-	1	1	AY.98	0.000079
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AY.99	0.001049
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	AZ.2	0.000821
ORF1ab/nsp6	260	L260H	cTc	cAc	1	1	B.1	0.000009
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	B.1.1	0.000018
ORF1ab/nsp6	260	L260V	CtC	GtA	1	1	B.1.1	0.000018
ORF1ab/nsp6	260	L260E	CTC	GAA	1	1	B.1.1	0.000018
ORF1ab/nsp6	260	L260K	CTC	AAA	1	1	B.1.1	0.000018
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.157	0.000913
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.1.171	0.003676
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.189	0.001513
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.203	0.016949
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.1.214	0.000055
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.222	0.000204
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.1.222	0.000204
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.254	0.011236
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.265	0.003155
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	B.1.1.266	0.012195
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.1.27	0.00565
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.1.272	0.005208
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.277	0.000759
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	B.1.1.294	0.001266
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.294	0.001266
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.1.307	0.002532
ORF1ab/nsp6	260	L260del	CTC	---	1	1	B.1.1.315	0.008475
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.316	0.000925
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.317	0.000412
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.329	0.003846
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.33	0.000421
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.337	0.003597
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	B.1.1.369	0.000446
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.1.37	0.000193
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	B.1.1.37	0.000193
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.1.373	0.02381
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.374	0.002375
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.398	0.003226
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.424	0.045455
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.429	0.004608
ORF1ab/nsp6	260	L260H	cTc	cAc	1	1	B.1.1.434	0.000349
ORF1ab/nsp6	260	L260L	ctC	ctA	1	1	B.1.1.48	0.002874
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.1.50	0.000679
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	B.1.1.50	0.000679
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.506	0.037037
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.514	0.038462
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	B.1.1.515	0.02
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.1.521	0.005348
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.525	0.005464
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.1.56	0.017857
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.56	0.017857
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.59	0.006494
ORF1ab/nsp6	260	L260S	CTc	TCc	1	1	B.1.1.7	0.000001
ORF1ab/nsp6	260	L260R	cTc	cGc	1	1	B.1.1.7	0.000001
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.1.8	0.003584
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.110.3	0.000718
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.131	0.008772
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.139	0.000733
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.157	0.002985
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.158	0.02381
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.160.15	0.00495
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	B.1.177.12	0.000152
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.177.21	0.000076
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.177.4	0.000211
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.177.45	0.000381
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.177.60	0.000218
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.177.60	0.000218
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.177.65	0.000665
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.177.72	0.00339
ORF1ab/nsp6	260	L260del	CTC	---	1	1	B.1.177.73	0.000566
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.177.74	0.015152
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.177.77	0.000726
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.177.82	0.000477
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.177.83	0.001481
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.177.85	0.005435
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.177.86	0.000183
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.177.87	0.000728
ORF1ab/nsp6	260	L260del	CTC	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.182	0.007246
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.189	0.004292
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.192	0.009259
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.192	0.009259
ORF1ab/nsp6	260	L260V	Ctc	Gtc	1	1	B.1.2	0.000009
ORF1ab/nsp6	260	L260del	CTC	---	1	1	B.1.2	0.000009
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.214	0.003663
ORF1ab/nsp6	260	L260L	ctC	ctA	1	1	B.1.221.4	0.004167
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.223	0.002778
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.236	0.002053
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	B.1.238	0.014925
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	B.1.241	0.000812
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.258.14	0.00098
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	B.1.258.17	0.000104
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.258.5	0.008772
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.265	0.001271
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.279	0.000514
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.315	0.006061
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.340	0.004292
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.348	0.018182
ORF1ab/nsp6	260	L260del	CTC	---	1	1	B.1.351	0.00003
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	B.1.351	0.00003
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	B.1.36	0.000146
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.36.1	0.00114
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	B.1.36.25	0.002208
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.36.26	0.002857
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.36.9	0.003215
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.361	0.001289
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.367	0.000792
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.389	0.001002
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.391	0.001127
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.400	0.000429
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.408	0.00369
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.409	0.000781
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.416.1	0.001563
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.428	0.00102
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.432	0.011236
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.435	0.011364
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.436	0.001029
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.448	0.002625
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.468	0.005714
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.468	0.005714
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.471	0.002732
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.478	0.011765
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.497	0.000315
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	B.1.525	0.000113
ORF1ab/nsp6	260	L260R	cTc	cGc	1	1	B.1.526	0.000024
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	B.1.526	0.000024
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.527	0.003704
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.551	0.00129
ORF1ab/nsp6	260	L260del	CTC	---	1	1	B.1.561	0.000397
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	B.1.564	0.000426
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.566	0.019231
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	B.1.575	0.000303
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.582	0.000491
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.585	0.027778
ORF1ab/nsp6	260	L260del	CTC	---	1	1	B.1.585	0.027778
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.587	0.001898
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.588	0.00091
ORF1ab/nsp6	260	L260V	Ctc	Gtc	1	1	B.1.588	0.00091
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	B.1.595	0.000261
ORF1ab/nsp6	260	L260del	CTC	---	1	1	B.1.596	0.000087
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.607	0.052632
ORF1ab/nsp6	260	L260del1	ctC	ct-	1	1	B.1.617.2	0.000004
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.617.3	0.002985
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.618	0.004032
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.620	0.000946
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.625	0.002353
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.1.628	0.000352
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.631	0.003367
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.1.633	0.041667
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.28	0.003279
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.29	0.003509
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.34	0.013699
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.38	0.02381
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	B.40	0.000364
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.55	0.00295
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	B.6.6	0.000889
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	B.6.6	0.000889
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	C.1.2	0.004255
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	C.16	0.00106
ORF1ab/nsp6	260	L260del	CTC	---	1	1	C.17	0.055556
ORF1ab/nsp6	260	L260del1	Ctc	-tc	1	1	C.36	0.000911
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	C.36.3.1	0.002717
ORF1ab/nsp6	260	L260R	cTc	cGc	1	1	C.37	0.000116
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	D.2	0.000075
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	L.3	0.003546
ORF1ab/nsp6	260	L260del	CTC	---	1	1	N.4	0.004255
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	N.5	0.001767
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	N.9	0.005952
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	P.1.1	0.000318
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	P.1.10.1	0.00813
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	P.1.11	0.010204
ORF1ab/nsp6	260	L260H	cTc	cAc	1	1	P.1.15	0.000232
ORF1ab/nsp6	260	L260P	cTc	cCc	1	1	P.1.15	0.000232
ORF1ab/nsp6	260	L260I	Ctc	Atc	1	1	P.1.16	0.000374
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	P.1.17	0.000162
ORF1ab/nsp6	260	L260F	Ctc	Ttc	1	1	P.1.6	0.001946
ORF1ab/nsp6	260	L260del	CTC	---	1	1	Q.8	0.000165
ORF1ab/nsp6	260	L260L	ctC	ctT	1	1	W.3	0.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.