CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 26

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp626V26GV3595GnonsyngTcgGc269526260.97439711048-11050
ORF1ab/nsp626V26GV3595GnonsyngTCgGT2695340.01261611048-11050
ORF1ab/nsp626V26GV3595GnonsyngTCgGA2695230.0085343211048-11050
ORF1ab/nsp626V26GV3595GnonsyngTCgGG2695120.0044526911048-11050
ORF1ab/nsp626V26VV3595VsyngtCgtT240122440.93461111048-11050
ORF1ab/nsp626V26VV3595VsyngtCgtA24011260.052478111048-11050
ORF1ab/nsp626V26VV3595VsyngtCgtG2401310.012911311048-11050
ORF1ab/nsp626V26IV3595InonsynGtcAtc4054040.99753111048-11050
ORF1ab/nsp626V26IV3595InonsynGtCAtT40510.0024691411048-11050
ORF1ab/nsp626V26FV3595FnonsynGtcTtc2682640.98507511048-11050
ORF1ab/nsp626V26FV3595FnonsynGtCTtT26840.014925411048-11050
ORF1ab/nsp626V26AV3595AnonsyngTcgCc1201160.96666711048-11050
ORF1ab/nsp626V26AV3595AnonsyngTCgCA12020.016666711048-11050
ORF1ab/nsp626V26AV3595AnonsyngTCgCT12020.016666711048-11050
ORF1ab/nsp626V26DV3595DnonsyngTCgAT76460.60526311048-11050
ORF1ab/nsp626V26DV3595DnonsyngTcgAc76300.39473711048-11050
ORF1ab/nsp626V26EV3595EnonsyngTCgAA52370.71153811048-11050
ORF1ab/nsp626V26EV3595EnonsyngTCgAG52150.28846211048-11050
ORF1ab/nsp626V26delV3595deldelGTC---4747111048-11050
ORF1ab/nsp626V26CV3595CnonsynGTcTGc1060.611048-11050
ORF1ab/nsp626V26CV3595CnonsynGTCTGT1040.411048-11050
ORF1ab/nsp626V26LV3595LnonsynGtcCtc530.611048-11050
ORF1ab/nsp626V26LV3595LnonsynGtCTtA520.411048-11050
ORF1ab/nsp626V26del1V3595del1delgtCgt-33111048-11050
ORF1ab/nsp626V26SV3595SnonsynGTcTCc310.33333311048-11050
ORF1ab/nsp626V26SV3595SnonsynGTCTCA310.33333311048-11050
ORF1ab/nsp626V26SV3595SnonsynGTCTCT310.33333311048-11050
ORF1ab/nsp626V26YV3595YnonsynGTCTAT210.511048-11050
ORF1ab/nsp626V26del2V3595del2delGTc--c210.511048-11050
ORF1ab/nsp626V26del2V3595del2delgTCg--210.511048-11050
ORF1ab/nsp626V26YV3595YnonsynGTcTAc210.511048-11050
ORF1ab/nsp626V26XV3595XnonsynGTCTGA11111048-11050

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp626V26GgTcgGc26262695All0.000502
ORF1ab/nsp626V26GgTCgGT342695All0.000007
ORF1ab/nsp626V26GgTCgGA232695All0.000004
ORF1ab/nsp626V26GgTCgGG122695All0.000002
ORF1ab/nsp626V26GgTcgGc24892489B.1.4290.058563
ORF1ab/nsp626V26VgtCgtT22442401All0.000429
ORF1ab/nsp626V26VgtCgtA1262401All0.000024
ORF1ab/nsp626V26VgtCgtG312401All0.000006
ORF1ab/nsp626V26VgtCgtT344421B.1.1.70.000308
ORF1ab/nsp626V26VgtCgtA53421B.1.1.70.000047
ORF1ab/nsp626V26VgtCgtG24421B.1.1.70.000021
ORF1ab/nsp626V26IGtcAtc404405All0.000077
ORF1ab/nsp626V26IGtCAtT1405All0
ORF1ab/nsp626V26FGtcTtc264268All0.00005
ORF1ab/nsp626V26FGtCTtT4268All0.000001
ORF1ab/nsp626V26VgtCgtT251252AY.1030.001558
ORF1ab/nsp626V26VgtCgtA1252AY.1030.000006
ORF1ab/nsp626V26VgtCgtT196198B.1.10.003556
ORF1ab/nsp626V26VgtCgtA2198B.1.10.000036
ORF1ab/nsp626V26VgtCgtT189192B.1.617.20.000712
ORF1ab/nsp626V26VgtCgtA3192B.1.617.20.000011
ORF1ab/nsp626V26IGtcAtc178178AY.1030.001105
ORF1ab/nsp626V26VgtCgtT147148AY.430.000651
ORF1ab/nsp626V26VgtCgtA1148AY.430.000004
ORF1ab/nsp626V26VgtCgtT124124B.1.1.2510.984127
ORF1ab/nsp626V26AgTcgCc116120All0.000022
ORF1ab/nsp626V26AgTCgCT2120All0
ORF1ab/nsp626V26AgTCgCA2120All0
ORF1ab/nsp626V26VgtCgtT108111AY.250.00065
ORF1ab/nsp626V26VgtCgtA2111AY.250.000012
ORF1ab/nsp626V26VgtCgtG1111AY.250.000006
ORF1ab/nsp626V26VgtCgtT98100B.10.000898
ORF1ab/nsp626V26VgtCgtA2100B.10.000018
ORF1ab/nsp626V26VgtCgtT9494AY.1180.005889
ORF1ab/nsp626V26VgtCgtT9494B.1.5300.671429
ORF1ab/nsp626V26DgTCgAT4676All0.000009
ORF1ab/nsp626V26DgTcgAc3076All0.000006
ORF1ab/nsp626V26FGtcTtc6262P.1.70.019796
ORF1ab/nsp626V26VgtCgtT3159AY.30.000308
ORF1ab/nsp626V26VgtCgtA2859AY.30.000278
ORF1ab/nsp626V26DgTCgAT3759B.1.1.70.000033
ORF1ab/nsp626V26DgTcgAc2259B.1.1.70.00002
ORF1ab/nsp626V26VgtCgtT5358AY.40.000082
ORF1ab/nsp626V26VgtCgtA558AY.40.000008
ORF1ab/nsp626V26AgTcgCc5555B.1.1.70.000049
ORF1ab/nsp626V26EgTCgAA3752All0.000007
ORF1ab/nsp626V26EgTCgAG1552All0.000003
ORF1ab/nsp626V26VgtCgtT5252B.1.20.000458
ORF1ab/nsp626V26GgTcgGc4750B.10.00043
ORF1ab/nsp626V26GgTCgGG150B.10.000009
ORF1ab/nsp626V26GgTCgGA150B.10.000009
ORF1ab/nsp626V26GgTCgGT150B.10.000009
ORF1ab/nsp626V26GgTCgGT2149B.1.1.70.000019
ORF1ab/nsp626V26GgTCgGA1649B.1.1.70.000014
ORF1ab/nsp626V26GgTCgGG1049B.1.1.70.000009
ORF1ab/nsp626V26GgTcgGc249B.1.1.70.000002
ORF1ab/nsp626V26delGTC---4747All0.000009
ORF1ab/nsp626V26EgTCgAA3144B.1.1.70.000028
ORF1ab/nsp626V26EgTCgAG1344B.1.1.70.000012
ORF1ab/nsp626V26FGtcTtc4343D.20.003227
ORF1ab/nsp626V26VgtCgtT4141B.1.5260.000964
ORF1ab/nsp626V26IGtcAtc3535AY.250.000211
ORF1ab/nsp626V26GgTcgGc3535B.1.4270.001767
ORF1ab/nsp626V26IGtcAtc3333B.1.1.70.00003
ORF1ab/nsp626V26FGtcTtc3232B.1.1.70.000029
ORF1ab/nsp626V26VgtCgtT3232B.1.2580.00213
ORF1ab/nsp626V26VgtCgtT2630AY.440.000158
ORF1ab/nsp626V26VgtCgtA430AY.440.000024
ORF1ab/nsp626V26IGtcAtc2828AY.39.10.001109
ORF1ab/nsp626V26IGtcAtc2727AY.40.000042
ORF1ab/nsp626V26VgtCgtT2323AY.1070.010718
ORF1ab/nsp626V26VgtCgtT2121AY.390.000519
ORF1ab/nsp626V26delGTC---2121B.1.1.70.000019
ORF1ab/nsp626V26FGtcTtc1919AY.250.000114
ORF1ab/nsp626V26VgtCgtT1616AY.470.000498
ORF1ab/nsp626V26VgtCgtT1415B.1.3510.000416
ORF1ab/nsp626V26VgtCgtA115B.1.3510.00003
ORF1ab/nsp626V26FGtcTtc1515B.1.617.20.000056
ORF1ab/nsp626V26VgtCgtT1315P.10.000205
ORF1ab/nsp626V26VgtCgtA115P.10.000016
ORF1ab/nsp626V26VgtCgtG115P.10.000016
ORF1ab/nsp626V26GgTCgGT6140.333333
ORF1ab/nsp626V26GgTcgGc6140.333333
ORF1ab/nsp626V26GgTCgGA2140.111111
ORF1ab/nsp626V26VgtCgtT1212AY.290.000189
ORF1ab/nsp626V26IGtcAtc1111AY.30.000109
ORF1ab/nsp626V26GgTcgGc1111B.1.10.0002
ORF1ab/nsp626V26VgtCgtT1111B.1.1.10.003594
ORF1ab/nsp626V26GgTCgGT411B.1.177.810.000757
ORF1ab/nsp626V26GgTcgGc411B.1.177.810.000757
ORF1ab/nsp626V26GgTCgGA311B.1.177.810.000568
ORF1ab/nsp626V26CGTcTGc610All0.000001
ORF1ab/nsp626V26CGTCTGT410All0.000001
ORF1ab/nsp626V26FGtcTtc1010AY.330.000668
ORF1ab/nsp626V26IGtcAtc99AY.290.000142
ORF1ab/nsp626V26FGtcTtc99AY.40.000014
ORF1ab/nsp626V26AgTcgCc99AY.40.000014
ORF1ab/nsp626V26IGtcAtc99AY.430.00004
ORF1ab/nsp626V26VgtCgtT99AY.750.000504
ORF1ab/nsp626V26VgtCgtT99B.1.177.600.001966
ORF1ab/nsp626V26VgtCgtT99B.1.6210.000797
ORF1ab/nsp626V26VgtCgtT99P.20.00168
ORF1ab/nsp626V26VgtCgtT680.333333
ORF1ab/nsp626V26VgtCgtA280.111111
ORF1ab/nsp626V26AgTcgCc88AY.440.000049
ORF1ab/nsp626V26VgtCgtT88B.1.3960.005646
ORF1ab/nsp626V26VgtCgtA47AY.1000.000184
ORF1ab/nsp626V26VgtCgtT37AY.1000.000138
ORF1ab/nsp626V26VgtCgtT77AY.950.005327
ORF1ab/nsp626V26VgtCgtT47B.1.1770.000053
ORF1ab/nsp626V26VgtCgtA27B.1.1770.000026
ORF1ab/nsp626V26VgtCgtG17B.1.1770.000013
ORF1ab/nsp626V26VgtCgtT47B.1.177.810.000757
ORF1ab/nsp626V26VgtCgtA37B.1.177.810.000568
ORF1ab/nsp626V26FGtcTtc360.166667
ORF1ab/nsp626V26CGTCTGT360.166667
ORF1ab/nsp626V26CGTcTGc360.166667
ORF1ab/nsp626V26FGtCTtT360.166667
ORF1ab/nsp626V26AgTCgCT260.111111
ORF1ab/nsp626V26AgTCgCA260.111111
ORF1ab/nsp626V26AgTcgCc260.111111
ORF1ab/nsp626V26FGtcTtc66AY.30.00006
ORF1ab/nsp626V26IGtcAtc66AY.3.10.000512
ORF1ab/nsp626V26VgtCgtT66B.1.1.2140.000333
ORF1ab/nsp626V26IGtcAtc66B.1.617.20.000023
ORF1ab/nsp626V26LGtcCtc35All0.000001
ORF1ab/nsp626V26LGtCTtA25All0
ORF1ab/nsp626V26VgtCgtT45AY.1020.000106
ORF1ab/nsp626V26VgtCgtA15AY.1020.000027
ORF1ab/nsp626V26FGtcTtc55AY.1180.000313
ORF1ab/nsp626V26AgTcgCc55AY.290.000079
ORF1ab/nsp626V26VgtCgtT55AY.3.10.000426
ORF1ab/nsp626V26VgtCgtT55AY.39.10.000198
ORF1ab/nsp626V26VgtCgtT55AY.450.000608
ORF1ab/nsp626V26VgtCgtT55AY.460.00052
ORF1ab/nsp626V26VgtCgtT55AY.50.000103
ORF1ab/nsp626V26VgtCgtT55AY.9.20.000184
ORF1ab/nsp626V26VgtCgtT45B0.000511
ORF1ab/nsp626V26VgtCgtA15B0.000128
ORF1ab/nsp626V26FGtcTtc55B.1.1.2160.004452
ORF1ab/nsp626V26VgtCgtT55B.1.2210.000355
ORF1ab/nsp626V26VgtCgtT55B.1.2430.000348
ORF1ab/nsp626V26GgTcgGc55B.1.3110.001373
ORF1ab/nsp626V26VgtCgtT55B.1.4200.052083
ORF1ab/nsp626V26GgTcgGc55B.1.429.10.060241
ORF1ab/nsp626V26AgTcgCc44AY.1020.000106
ORF1ab/nsp626V26VgtCgtT44AY.4.20.000087
ORF1ab/nsp626V26IGtcAtc44AY.440.000024
ORF1ab/nsp626V26VgtCgtT44AY.610.000419
ORF1ab/nsp626V26DgTCgAT24B.10.000018
ORF1ab/nsp626V26DgTcgAc24B.10.000018
ORF1ab/nsp626V26IGtcAtc44B.1.1.2190.02
ORF1ab/nsp626V26VgtCgtT44B.1.1.5190.000159
ORF1ab/nsp626V26DgTCgAT24B.1.177.810.000379
ORF1ab/nsp626V26DgTcgAc24B.1.177.810.000379
ORF1ab/nsp626V26FGtcTtc44B.1.3510.000119
ORF1ab/nsp626V26FGtcTtc44B.1.36.290.002069
ORF1ab/nsp626V26VgtCgtT44B.1.3670.00317
ORF1ab/nsp626V26IGtcAtc44B.1.4290.000094
ORF1ab/nsp626V26AgTcgCc44B.1.617.20.000015
ORF1ab/nsp626V26GgTcgGc44B.520.040404
ORF1ab/nsp626V26AgTcgCc44Q.80.00066
ORF1ab/nsp626V26SGTCTCT130.055556
ORF1ab/nsp626V26SGTcTCc130.055556
ORF1ab/nsp626V26SGTCTCA130.055556
ORF1ab/nsp626V26del1gtCgt-33All0.000001
ORF1ab/nsp626V26SGTCTCA13All0
ORF1ab/nsp626V26SGTCTCT13All0
ORF1ab/nsp626V26SGTcTCc13All0
ORF1ab/nsp626V26FGtcTtc33AY.1030.000019
ORF1ab/nsp626V26AgTcgCc33AY.330.0002
ORF1ab/nsp626V26VgtCgtT33AY.330.0002
ORF1ab/nsp626V26IGtcAtc33AY.390.000074
ORF1ab/nsp626V26VgtCgtT33AY.420.000121
ORF1ab/nsp626V26delGTC---33AY.430.000013
ORF1ab/nsp626V26FGtcTtc33AY.440.000018
ORF1ab/nsp626V26AgTcgCc33AY.450.000365
ORF1ab/nsp626V26IGtcAtc33AY.50.000062
ORF1ab/nsp626V26VgtCgtT23AY.60.000082
ORF1ab/nsp626V26VgtCgtG13AY.60.000041
ORF1ab/nsp626V26FGtcTtc33AY.740.000347
ORF1ab/nsp626V26FGtcTtc33AY.980.000237
ORF1ab/nsp626V26VgtCgtT33AZ.20.002463
ORF1ab/nsp626V26EgTCgAA23B.10.000018
ORF1ab/nsp626V26EgTCgAG13B.10.000009
ORF1ab/nsp626V26AgTcgCc33B.1.10.000054
ORF1ab/nsp626V26FGtcTtc33B.1.1.700.001023
ORF1ab/nsp626V26VgtCgtT33B.1.177.560.002003
ORF1ab/nsp626V26IGtcAtc33B.1.20.000026
ORF1ab/nsp626V26VgtCgtT33B.1.36.70.012
ORF1ab/nsp626V26IGtcAtc33B.1.4270.000151
ORF1ab/nsp626V26VgtCgtT33B.1.4290.000071
ORF1ab/nsp626V26VgtCgtT33C.370.000348
ORF1ab/nsp626V26VgtCgtT33N.50.0053
ORF1ab/nsp626V26DgTCgAT120.055556
ORF1ab/nsp626V26YGTCTAT120.055556
ORF1ab/nsp626V26YGTcTAc120.055556
ORF1ab/nsp626V26DgTcgAc120.055556
ORF1ab/nsp626V26del2GTc--c12All0
ORF1ab/nsp626V26YGTcTAc12All0
ORF1ab/nsp626V26YGTCTAT12All0
ORF1ab/nsp626V26del2gTCg--12All0
ORF1ab/nsp626V26FGtcTtc22AY.1020.000053
ORF1ab/nsp626V26AgTcgCc22AY.1030.000012
ORF1ab/nsp626V26VgtCgtT22AY.1170.000169
ORF1ab/nsp626V26IGtcAtc22AY.120.000632
ORF1ab/nsp626V26IGtcAtc22AY.120.20.002571
ORF1ab/nsp626V26VgtCgtT22AY.200.000078
ORF1ab/nsp626V26GgTCgGG12AY.250.000006
ORF1ab/nsp626V26GgTCgGA12AY.250.000006
ORF1ab/nsp626V26VgtCgtT22AY.260.000057
ORF1ab/nsp626V26AgTcgCc22AY.30.00002
ORF1ab/nsp626V26delGTC---22AY.350.000466
ORF1ab/nsp626V26VgtCgtT22AY.370.000632
ORF1ab/nsp626V26FGtcTtc22AY.390.000049
ORF1ab/nsp626V26AgTcgCc22AY.390.000049
ORF1ab/nsp626V26delGTC---22AY.40.000003
ORF1ab/nsp626V26VgtCgtT22AY.46.60.000144
ORF1ab/nsp626V26VgtCgtT22AY.5.40.000553
ORF1ab/nsp626V26IGtcAtc22AY.740.000231
ORF1ab/nsp626V26IGtcAtc22AY.9.10.000167
ORF1ab/nsp626V26IGtcAtc22B.10.000018
ORF1ab/nsp626V26FGtcTtc22B.1.1.2220.000408
ORF1ab/nsp626V26VgtCgtT22B.1.1.2320.00363
ORF1ab/nsp626V26VgtCgtT22B.1.1.3170.000823
ORF1ab/nsp626V26VgtCgtT22B.1.1.3180.000604
ORF1ab/nsp626V26VgtCgtG22B.1.1.3620.011236
ORF1ab/nsp626V26GgTcgGc22B.1.1.4640.002946
ORF1ab/nsp626V26VgtCgtT22B.1.1600.000062
ORF1ab/nsp626V26EgTCgAA22B.1.177.810.000379
ORF1ab/nsp626V26FGtcTtc12B.1.2210.000071
ORF1ab/nsp626V26GgTcgGc12B.1.2210.000071
ORF1ab/nsp626V26DgTcgAc12B.1.2210.000071
ORF1ab/nsp626V26GgTCgGT12B.1.2210.000071
ORF1ab/nsp626V26DgTCgAT12B.1.2210.000071
ORF1ab/nsp626V26CGTcTGc12B.1.2210.000071
ORF1ab/nsp626V26CGTCTGT12B.1.2210.000071
ORF1ab/nsp626V26FGtCTtT12B.1.2210.000071
ORF1ab/nsp626V26VgtCgtT22B.1.360.000292
ORF1ab/nsp626V26IGtcAtc22B.1.360.000292
ORF1ab/nsp626V26VgtCgtT22B.1.3620.003082
ORF1ab/nsp626V26VgtCgtT22B.1.4270.000101
ORF1ab/nsp626V26FGtcTtc22B.1.4360.002058
ORF1ab/nsp626V26VgtCgtT12B.1.5760.000907
ORF1ab/nsp626V26VgtCgtA12B.1.5760.000907
ORF1ab/nsp626V26VgtCgtT12B.1.5960.000087
ORF1ab/nsp626V26VgtCgtA12B.1.5960.000087
ORF1ab/nsp626V26DgTCgAT12B.1.617.20.000004
ORF1ab/nsp626V26DgTcgAc12B.1.617.20.000004
ORF1ab/nsp626V26VgtCgtT22B.1.6280.000705
ORF1ab/nsp626V26VgtCgtT22C.10.004785
ORF1ab/nsp626V26VgtCgtT22C.36.30.001134
ORF1ab/nsp626V26VgtCgtA22D.20.00015
ORF1ab/nsp626V26FGtcTtc22P.10.000032
ORF1ab/nsp626V26DgTcgAc12P.10.000016
ORF1ab/nsp626V26EgTCgAG12P.10.000016
ORF1ab/nsp626V26EgTCgAA12P.10.000016
ORF1ab/nsp626V26DgTCgAT12P.10.000016
ORF1ab/nsp626V26VgtCgtT12P.1.140.000048
ORF1ab/nsp626V26VgtCgtA12P.1.140.000048
ORF1ab/nsp626V26delGTC---22P.1.150.000465
ORF1ab/nsp626V26VgtCgtT22P.1.20.002312
ORF1ab/nsp626V26VgtCgtT22P.1.70.000639
ORF1ab/nsp626V26XGTCTGA110.055556
ORF1ab/nsp626V26LGtCTtA110.055556
ORF1ab/nsp626V26VgtCgtT11A.2.40.003367
ORF1ab/nsp626V26VgtCgtT11A.2.50.000499
ORF1ab/nsp626V26GgTcgGc11A.2.50.000499
ORF1ab/nsp626V26FGtcTtc11A.2.5.20.001572
ORF1ab/nsp626V26GgTcgGc11A.2.5.20.001572
ORF1ab/nsp626V26VgtCgtT11A.280.002646
ORF1ab/nsp626V26IGtcAtc11AD.20.000219
ORF1ab/nsp626V26XGTCTGA11All0
ORF1ab/nsp626V26AgTcgCc11AY.100.00053
ORF1ab/nsp626V26IGtcAtc11AY.1000.000046
ORF1ab/nsp626V26IGtcAtc11AY.1020.000027
ORF1ab/nsp626V26VgtCgtT11AY.1110.000183
ORF1ab/nsp626V26VgtCgtA11AY.1140.000231
ORF1ab/nsp626V26VgtCgtT11AY.1160.000287
ORF1ab/nsp626V26IGtcAtc11AY.1160.000287
ORF1ab/nsp626V26del1gtCgt-11AY.1200.000037
ORF1ab/nsp626V26VgtCgtT11AY.16.10.00047
ORF1ab/nsp626V26FGtcTtc11AY.200.000039
ORF1ab/nsp626V26IGtcAtc11AY.200.000039
ORF1ab/nsp626V26VgtCgtT11AY.23.10.000417
ORF1ab/nsp626V26IGtcAtc11AY.240.000431
ORF1ab/nsp626V26FGtcTtc11AY.260.000028
ORF1ab/nsp626V26FGtcTtc11AY.290.000016
ORF1ab/nsp626V26IGtcAtc11AY.29.10.000221
ORF1ab/nsp626V26del1gtCgt-11AY.30.00001
ORF1ab/nsp626V26VgtCgtT11AY.300.000396
ORF1ab/nsp626V26VgtCgtT11AY.39.20.001541
ORF1ab/nsp626V26VgtCgtT11AY.4.2.10.000149
ORF1ab/nsp626V26VgtCgtT11AY.400.000964
ORF1ab/nsp626V26IGtcAtc11AY.410.000294
ORF1ab/nsp626V26IGtcAtc11AY.420.00004
ORF1ab/nsp626V26delGTC---11AY.460.000104
ORF1ab/nsp626V26IGtcAtc11AY.460.000104
ORF1ab/nsp626V26IGtcAtc11AY.470.000031
ORF1ab/nsp626V26FGtcTtc11AY.470.000031
ORF1ab/nsp626V26FGtcTtc11AY.50.000021
ORF1ab/nsp626V26VgtCgtT11AY.5.20.002463
ORF1ab/nsp626V26del2GTc--c11AY.520.000814
ORF1ab/nsp626V26VgtCgtT11AY.550.000917
ORF1ab/nsp626V26delGTC---11AY.600.000938
ORF1ab/nsp626V26LGtCTtA11AY.620.000436
ORF1ab/nsp626V26delGTC---11AY.660.00107
ORF1ab/nsp626V26VgtCgtA11AY.680.000274
ORF1ab/nsp626V26IGtcAtc11AY.690.000187
ORF1ab/nsp626V26AgTcgCc11AY.750.000056
ORF1ab/nsp626V26delGTC---11AY.75.10.00018
ORF1ab/nsp626V26GgTcgGc11AY.9.20.000037
ORF1ab/nsp626V26VgtCgtT11AY.920.000287
ORF1ab/nsp626V26IGtcAtc11AY.980.000079
ORF1ab/nsp626V26VgtCgtT11AY.98.10.000048
ORF1ab/nsp626V26VgtCgtT11AY.99.20.000092
ORF1ab/nsp626V26VgtCgtT11AZ.50.003509
ORF1ab/nsp626V26GgTcgGc11B0.000128
ORF1ab/nsp626V26AgTcgCc11B0.000128
ORF1ab/nsp626V26FGtcTtc11B.10.000009
ORF1ab/nsp626V26delGTC---11B.10.000009
ORF1ab/nsp626V26IGtCAtT11B.1.10.000018
ORF1ab/nsp626V26FGtcTtc11B.1.1.100.001115
ORF1ab/nsp626V26VgtCgtG11B.1.1.1740.003378
ORF1ab/nsp626V26VgtCgtT11B.1.1.1890.001513
ORF1ab/nsp626V26IGtcAtc11B.1.1.2140.000055
ORF1ab/nsp626V26GgTcgGc11B.1.1.2200.001859
ORF1ab/nsp626V26delGTC---11B.1.1.2360.006897
ORF1ab/nsp626V26AgTcgCc11B.1.1.2580.003257
ORF1ab/nsp626V26VgtCgtA11B.1.1.280.000311
ORF1ab/nsp626V26GgTcgGc11B.1.1.3060.000438
ORF1ab/nsp626V26FGtcTtc11B.1.1.3060.000438
ORF1ab/nsp626V26VgtCgtT11B.1.1.3110.000358
ORF1ab/nsp626V26FGtcTtc11B.1.1.3110.000358
ORF1ab/nsp626V26VgtCgtT11B.1.1.3290.003846
ORF1ab/nsp626V26LGtcCtc11B.1.1.3720.000689
ORF1ab/nsp626V26IGtcAtc11B.1.1.3890.006061
ORF1ab/nsp626V26VgtCgtA11B.1.1.4400.011765
ORF1ab/nsp626V26IGtcAtc11B.1.1.5190.00004
ORF1ab/nsp626V26VgtCgtT11B.1.1.5260.003546
ORF1ab/nsp626V26del1gtCgt-11B.1.1.70.000001
ORF1ab/nsp626V26CGTcTGc11B.1.1.70.000001
ORF1ab/nsp626V26GgTcgGc11B.1.1.830.00271
ORF1ab/nsp626V26VgtCgtT11B.1.1110.001175
ORF1ab/nsp626V26VgtCgtT11B.1.1570.002985
ORF1ab/nsp626V26FGtcTtc11B.1.160.90.007194
ORF1ab/nsp626V26FGtcTtc11B.1.1770.000013
ORF1ab/nsp626V26AgTcgCc11B.1.1770.000013
ORF1ab/nsp626V26delGTC---11B.1.177.150.000631
ORF1ab/nsp626V26VgtCgtA11B.1.177.150.000631
ORF1ab/nsp626V26delGTC---11B.1.177.40.000211
ORF1ab/nsp626V26IGtcAtc11B.1.177.620.001192
ORF1ab/nsp626V26AgTcgCc11B.1.177.70.000165
ORF1ab/nsp626V26VgtCgtT11B.1.177.70.000165
ORF1ab/nsp626V26delGTC---11B.1.177.760.002494
ORF1ab/nsp626V26VgtCgtT11B.1.177.860.000183
ORF1ab/nsp626V26delGTC---11B.1.177.90.001332
ORF1ab/nsp626V26GgTcgGc11B.1.20.000009
ORF1ab/nsp626V26AgTcgCc11B.1.20.000009
ORF1ab/nsp626V26LGtcCtc11B.1.20.000009
ORF1ab/nsp626V26FGtcTtc11B.1.2060.000816
ORF1ab/nsp626V26GgTcgGc11B.1.2220.001692
ORF1ab/nsp626V26IGtcAtc11B.1.2340.000132
ORF1ab/nsp626V26FGtcTtc11B.1.2360.002053
ORF1ab/nsp626V26FGtcTtc11B.1.2430.00007
ORF1ab/nsp626V26GgTCgGT11B.1.2580.000067
ORF1ab/nsp626V26FGtcTtc11B.1.2580.000067
ORF1ab/nsp626V26FGtcTtc11B.1.258.110.000396
ORF1ab/nsp626V26AgTcgCc11B.1.258.170.000104
ORF1ab/nsp626V26delGTC---11B.1.258.30.001675
ORF1ab/nsp626V26FGtcTtc11B.1.3290.000608
ORF1ab/nsp626V26IGtcAtc11B.1.3510.00003
ORF1ab/nsp626V26delGTC---11B.1.3510.00003
ORF1ab/nsp626V26FGtcTtc11B.1.360.000146
ORF1ab/nsp626V26LGtcCtc11B.1.360.000146
ORF1ab/nsp626V26VgtCgtT11B.1.36.170.000494
ORF1ab/nsp626V26VgtCgtT11B.1.36.310.001751
ORF1ab/nsp626V26VgtCgtT11B.1.36.380.001642
ORF1ab/nsp626V26GgTcgGc11B.1.3600.012658
ORF1ab/nsp626V26VgtCgtT11B.1.3800.006623
ORF1ab/nsp626V26VgtCgtT11B.1.3910.001127
ORF1ab/nsp626V26VgtCgtT11B.1.3970.004854
ORF1ab/nsp626V26GgTcgGc11B.1.4000.000429
ORF1ab/nsp626V26AgTcgCc11B.1.4270.00005
ORF1ab/nsp626V26IGtcAtc11B.1.4620.007246
ORF1ab/nsp626V26VgtCgtT11B.1.5170.000427
ORF1ab/nsp626V26VgtCgtT11B.1.5230.002451
ORF1ab/nsp626V26VgtCgtT11B.1.5250.000113
ORF1ab/nsp626V26GgTcgGc11B.1.5380.008065
ORF1ab/nsp626V26VgtCgtT11B.1.5580.004566
ORF1ab/nsp626V26FGtcTtc11B.1.5640.000426
ORF1ab/nsp626V26CGTcTGc11B.1.5640.000426
ORF1ab/nsp626V26GgTcgGc11B.1.5640.000426
ORF1ab/nsp626V26IGtcAtc11B.1.5680.001111
ORF1ab/nsp626V26VgtCgtT11B.1.5740.002151
ORF1ab/nsp626V26DgTCgAT11B.1.5760.000907
ORF1ab/nsp626V26EgTCgAA11B.1.5760.000907
ORF1ab/nsp626V26VgtCgtT11B.1.588.10.038462
ORF1ab/nsp626V26IGtcAtc11B.1.5960.000087
ORF1ab/nsp626V26VgtCgtT11B.1.6090.000479
ORF1ab/nsp626V26GgTcgGc11B.1.617.10.000129
ORF1ab/nsp626V26delGTC---11B.1.617.20.000004
ORF1ab/nsp626V26IGtcAtc11B.1.6190.000871
ORF1ab/nsp626V26delGTC---11B.1.6210.000089
ORF1ab/nsp626V26IGtcAtc11B.1.6210.000089
ORF1ab/nsp626V26VgtCgtT11B.1.6270.00202
ORF1ab/nsp626V26VgtCgtT11B.1.6350.017544
ORF1ab/nsp626V26VgtCgtT11B.1.940.027027
ORF1ab/nsp626V26GgTcgGc11B.1.940.027027
ORF1ab/nsp626V26VgtCgtT11B.460.020833
ORF1ab/nsp626V26AgTcgCc11D.20.000075
ORF1ab/nsp626V26FGtcTtc11D.30.005917
ORF1ab/nsp626V26delGTC---11N.40.004255
ORF1ab/nsp626V26IGtcAtc11P.10.000016
ORF1ab/nsp626V26VgtCgtT11P.1.10.000318
ORF1ab/nsp626V26IGtcAtc11P.1.100.000269
ORF1ab/nsp626V26VgtCgtT11P.1.100.000269
ORF1ab/nsp626V26delGTC---11P.1.160.000374
ORF1ab/nsp626V26VgtCgtT11P.1.160.000374
ORF1ab/nsp626V26delGTC---11Q.10.000126
ORF1ab/nsp626V26VgtCgtT11Q.30.000145
ORF1ab/nsp626V26del2gTCg--11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.