CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 257

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6257Q257HQ3826HnonsyncaGcaT161815940.98516711741-11743
ORF1ab/nsp6257Q257HQ3826HnonsyncaGcaC1618240.014833111741-11743
ORF1ab/nsp6257Q257QQ3826QsyncaGcaA372372111741-11743
ORF1ab/nsp6257Q257LQ3826LnonsyncAgcTg69590.85507211741-11743
ORF1ab/nsp6257Q257LQ3826LnonsyncAGcTT6950.072463811741-11743
ORF1ab/nsp6257Q257LQ3826LnonsyncAGcTA6920.028985511741-11743
ORF1ab/nsp6257Q257LQ3826LnonsynCAgTTg6920.028985511741-11743
ORF1ab/nsp6257Q257LQ3826LnonsyncAGcTC6910.014492811741-11743
ORF1ab/nsp6257Q257XQ3826XnonsynCaGTaA63330.5238111741-11743
ORF1ab/nsp6257Q257XQ3826XnonsynCagTag63300.4761911741-11743
ORF1ab/nsp6257Q257RQ3826RnonsyncAgcGg4545111741-11743
ORF1ab/nsp6257Q257delQ3826deldelCAG---2323111741-11743
ORF1ab/nsp6257Q257del1Q3826del1delcaGca-1212111741-11743
ORF1ab/nsp6257Q257PQ3826PnonsyncAgcCg1060.611741-11743
ORF1ab/nsp6257Q257PQ3826PnonsyncAGcCT1020.211741-11743
ORF1ab/nsp6257Q257PQ3826PnonsyncAGcCA1020.211741-11743
ORF1ab/nsp6257Q257SQ3826SnonsynCAGTCT420.511741-11743
ORF1ab/nsp6257Q257SQ3826SnonsynCAgTCg420.511741-11743
ORF1ab/nsp6257Q257KQ3826KnonsynCagAag320.66666711741-11743
ORF1ab/nsp6257Q257KQ3826KnonsynCaGAaA310.33333311741-11743
ORF1ab/nsp6257Q257EQ3826EnonsynCagGag22111741-11743
ORF1ab/nsp6257Q257FQ3826FnonsynCAGTTT22111741-11743
ORF1ab/nsp6257Q257del2Q3826del2delcAGc--210.511741-11743
ORF1ab/nsp6257Q257del2Q3826del2delCAg--g210.511741-11743

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6257Q257HcaGcaT15941618All0.000305
ORF1ab/nsp6257Q257HcaGcaC241618All0.000005
ORF1ab/nsp6257Q257QcaGcaA372372All0.000071
ORF1ab/nsp6257Q257HcaGcaT151157B.1.1.70.000135
ORF1ab/nsp6257Q257HcaGcaC6157B.1.1.70.000005
ORF1ab/nsp6257Q257QcaGcaA149149B.1.1.70.000133
ORF1ab/nsp6257Q257HcaGcaT116116AY.40.000181
ORF1ab/nsp6257Q257HcaGcaT113113AY.9.20.00415
ORF1ab/nsp6257Q257HcaGcaT103103AY.390.002545
ORF1ab/nsp6257Q257HcaGcaT8888AY.250.000529
ORF1ab/nsp6257Q257HcaGcaT8080B.1.5260.00188
ORF1ab/nsp6257Q257HcaGcaT7777AY.430.000341
ORF1ab/nsp6257Q257HcaGcaT7374AY.30.000726
ORF1ab/nsp6257Q257HcaGcaC174AY.30.00001
ORF1ab/nsp6257Q257LcAgcTg5969All0.000011
ORF1ab/nsp6257Q257LcAGcTT569All0.000001
ORF1ab/nsp6257Q257LCAgTTg269All0
ORF1ab/nsp6257Q257LcAGcTA269All0
ORF1ab/nsp6257Q257LcAGcTC169All0
ORF1ab/nsp6257Q257HcaGcaT6666B.1.617.20.000249
ORF1ab/nsp6257Q257HcaGcaT6366P.10.000993
ORF1ab/nsp6257Q257HcaGcaC366P.10.000047
ORF1ab/nsp6257Q257XCaGTaA3363All0.000006
ORF1ab/nsp6257Q257XCagTag3063All0.000006
ORF1ab/nsp6257Q257HcaGcaT5152AY.440.00031
ORF1ab/nsp6257Q257HcaGcaC152AY.440.000006
ORF1ab/nsp6257Q257RcAgcGg4545All0.000009
ORF1ab/nsp6257Q257HcaGcaT3939B.1.1.931
ORF1ab/nsp6257Q257HcaGcaT3636AY.1030.000224
ORF1ab/nsp6257Q257HcaGcaT3636AY.70.007056
ORF1ab/nsp6257Q257HcaGcaT3131B.1.5610.012306
ORF1ab/nsp6257Q257QcaGcaA2828A.270.046358
ORF1ab/nsp6257Q257HcaGcaT2828AY.7.10.003156
ORF1ab/nsp6257Q257HcaGcaT2424AY.260.000679
ORF1ab/nsp6257Q257HcaGcaT2424B.1.3510.000713
ORF1ab/nsp6257Q257delCAG---2323All0.000004
ORF1ab/nsp6257Q257QcaGcaA2222AY.250.000132
ORF1ab/nsp6257Q257QcaGcaA2222B.1.3690.006275
ORF1ab/nsp6257Q257HcaGcaT2121AY.980.001659
ORF1ab/nsp6257Q257HcaGcaT1919B.10.000174
ORF1ab/nsp6257Q257HcaGcaT1718B.1.20.00015
ORF1ab/nsp6257Q257HcaGcaC118B.1.20.000009
ORF1ab/nsp6257Q257HcaGcaT1717B.1.1.1210.041262
ORF1ab/nsp6257Q257HcaGcaT1717B.1.1600.00053
ORF1ab/nsp6257Q257XCaGTaA1516AY.99.20.001382
ORF1ab/nsp6257Q257XCagTag116AY.99.20.000092
ORF1ab/nsp6257Q257RcAgcGg1616B.1.1.70.000014
ORF1ab/nsp6257Q257QcaGcaA1414AY.99.20.00129
ORF1ab/nsp6257Q257HcaGcaT1414B.1.5900.063636
ORF1ab/nsp6257Q257LcAgcTg1414B.1.617.20.000053
ORF1ab/nsp6257Q257del1caGca-1212All0.000002
ORF1ab/nsp6257Q257HcaGcaT1212AY.9.10.001005
ORF1ab/nsp6257Q257PcAgcCg610All0.000001
ORF1ab/nsp6257Q257PcAGcCT210All0
ORF1ab/nsp6257Q257PcAGcCA210All0
ORF1ab/nsp6257Q257HcaGcaT1010AY.1020.000265
ORF1ab/nsp6257Q257LcAgcTg1010AY.440.000061
ORF1ab/nsp6257Q257QcaGcaA99AY.40.000014
ORF1ab/nsp6257Q257QcaGcaA99AY.430.00004
ORF1ab/nsp6257Q257HcaGcaT89B.1.1770.000105
ORF1ab/nsp6257Q257HcaGcaC19B.1.1770.000013
ORF1ab/nsp6257Q257QcaGcaA99B.1.617.20.000034
ORF1ab/nsp6257Q257HcaGcaT99P.1.150.002091
ORF1ab/nsp6257Q257PcAgcCg480.222222
ORF1ab/nsp6257Q257PcAGcCT280.111111
ORF1ab/nsp6257Q257PcAGcCA280.111111
ORF1ab/nsp6257Q257HcaGcaT88A.2.50.003992
ORF1ab/nsp6257Q257HcaGcaT88AY.1190.000282
ORF1ab/nsp6257Q257HcaGcaT88AY.340.000776
ORF1ab/nsp6257Q257XCaGTaA78AY.430.000031
ORF1ab/nsp6257Q257XCagTag18AY.430.000004
ORF1ab/nsp6257Q257HcaGcaT88AY.750.000448
ORF1ab/nsp6257Q257HcaGcaT88B.1.10.000145
ORF1ab/nsp6257Q257QcaGcaA88B.1.20.00007
ORF1ab/nsp6257Q257HcaGcaT88B.1.2580.000532
ORF1ab/nsp6257Q257HcaGcaT77AY.1180.000439
ORF1ab/nsp6257Q257LcAgcTg77AY.40.000011
ORF1ab/nsp6257Q257QcaGcaA77B.10.000064
ORF1ab/nsp6257Q257QcaGcaA77B.1.1600.000218
ORF1ab/nsp6257Q257LcAgcTg260.111111
ORF1ab/nsp6257Q257LCAgTTg260.111111
ORF1ab/nsp6257Q257LcAGcTT260.111111
ORF1ab/nsp6257Q257HcaGcaT66AY.120.2.10.00299
ORF1ab/nsp6257Q257HcaGcaT66AY.4.20.00013
ORF1ab/nsp6257Q257QcaGcaA66AY.470.000187
ORF1ab/nsp6257Q257HcaGcaT66AY.570.003937
ORF1ab/nsp6257Q257QcaGcaA66AY.60.000247
ORF1ab/nsp6257Q257LcAgcTg36B.1.1.1920.006928
ORF1ab/nsp6257Q257LcAGcTT36B.1.1.1920.006928
ORF1ab/nsp6257Q257XCagTag46B.1.1.70.000004
ORF1ab/nsp6257Q257XCaGTaA26B.1.1.70.000002
ORF1ab/nsp6257Q257HcaGcaT55AY.1000.00023
ORF1ab/nsp6257Q257HcaGcaT55AY.46.60.000361
ORF1ab/nsp6257Q257HcaGcaT55AY.50.000103
ORF1ab/nsp6257Q257XCagTag55B.10.000046
ORF1ab/nsp6257Q257RcAgcGg55B.1.2390.006105
ORF1ab/nsp6257Q257QcaGcaA55B.1.5260.000118
ORF1ab/nsp6257Q257HcaGcaT55B.1.6210.000443
ORF1ab/nsp6257Q257QcaGcaA55C.230.02907
ORF1ab/nsp6257Q257HcaGcaT55K.30.030864
ORF1ab/nsp6257Q257SCAGTCT240.111111
ORF1ab/nsp6257Q257SCAgTCg240.111111
ORF1ab/nsp6257Q257SCAgTCg24All0
ORF1ab/nsp6257Q257SCAGTCT24All0
ORF1ab/nsp6257Q257HcaGcaT44AY.100.00212
ORF1ab/nsp6257Q257HcaGcaT44AY.1130.00057
ORF1ab/nsp6257Q257HcaGcaT44AY.130.000644
ORF1ab/nsp6257Q257XCaGTaA44AY.46.30.003735
ORF1ab/nsp6257Q257HcaGcaT44AY.610.000419
ORF1ab/nsp6257Q257HcaGcaT44AY.90.00027
ORF1ab/nsp6257Q257HcaGcaC44AY.950.003044
ORF1ab/nsp6257Q257HcaGcaT44B.1.1.4200.004024
ORF1ab/nsp6257Q257HcaGcaT44B.1.1.5190.000159
ORF1ab/nsp6257Q257HcaGcaT44B.1.1260.005102
ORF1ab/nsp6257Q257del1caGca-44B.1.20.000035
ORF1ab/nsp6257Q257RcAgcGg44B.1.3510.000119
ORF1ab/nsp6257Q257HcaGcaT44B.1.4060.024242
ORF1ab/nsp6257Q257LcAgcTg44B.1.4290.000094
ORF1ab/nsp6257Q257HcaGcaT44B.1.438.10.000429
ORF1ab/nsp6257Q257QcaGcaA44B.1.6210.000354
ORF1ab/nsp6257Q257QcaGcaA44P.10.000063
ORF1ab/nsp6257Q257HcaGcaT44P.1.170.000647
ORF1ab/nsp6257Q257KCagAag23All0
ORF1ab/nsp6257Q257KCaGAaA13All0
ORF1ab/nsp6257Q257QcaGcaA33AY.1030.000019
ORF1ab/nsp6257Q257HcaGcaT33AY.200.000117
ORF1ab/nsp6257Q257RcAgcGg33AY.260.000085
ORF1ab/nsp6257Q257HcaGcaT33AY.330.0002
ORF1ab/nsp6257Q257HcaGcaT33AY.420.000121
ORF1ab/nsp6257Q257QcaGcaA33AY.50.000062
ORF1ab/nsp6257Q257delCAG---33B.10.000027
ORF1ab/nsp6257Q257QcaGcaA33B.1.10.000054
ORF1ab/nsp6257Q257XCagTag33B.1.10.000054
ORF1ab/nsp6257Q257QcaGcaA33B.1.1.390.001529
ORF1ab/nsp6257Q257KCagAag23B.1.1.70.000002
ORF1ab/nsp6257Q257KCaGAaA13B.1.1.70.000001
ORF1ab/nsp6257Q257LcAgcTg33B.1.177.560.002003
ORF1ab/nsp6257Q257HcaGcaT33B.1.2430.000209
ORF1ab/nsp6257Q257QcaGcaA33B.1.3510.000089
ORF1ab/nsp6257Q257HcaGcaT33B.1.4290.000071
ORF1ab/nsp6257Q257HcaGcaT33B.1.5960.000261
ORF1ab/nsp6257Q257LcAgcTg33B.1.617.10.000387
ORF1ab/nsp6257Q257QcaGcaA33P.20.00056
ORF1ab/nsp6257Q257FCAGTTT220.111111
ORF1ab/nsp6257Q257QcaGcaA220.111111
ORF1ab/nsp6257Q257HcaGcaT22A0.000774
ORF1ab/nsp6257Q257FCAGTTT22All0
ORF1ab/nsp6257Q257ECagGag22All0
ORF1ab/nsp6257Q257del2CAg--g12All0
ORF1ab/nsp6257Q257del2cAGc--12All0
ORF1ab/nsp6257Q257HcaGcaT22AY.1170.000169
ORF1ab/nsp6257Q257HcaGcaT22AY.190.002281
ORF1ab/nsp6257Q257HcaGcaT22AY.290.000032
ORF1ab/nsp6257Q257QcaGcaA22AY.30.00002
ORF1ab/nsp6257Q257HcaGcaT22AY.360.000296
ORF1ab/nsp6257Q257delCAG---22AY.40.000003
ORF1ab/nsp6257Q257QcaGcaA22AY.440.000012
ORF1ab/nsp6257Q257RcAgcGg22AY.440.000012
ORF1ab/nsp6257Q257XCagTag22AY.440.000012
ORF1ab/nsp6257Q257QcaGcaA22AY.46.30.001867
ORF1ab/nsp6257Q257HcaGcaT22AY.46.40.000329
ORF1ab/nsp6257Q257HcaGcaT22AY.470.000062
ORF1ab/nsp6257Q257XCaGTaA22AY.50.000041
ORF1ab/nsp6257Q257HcaGcaT22AY.520.001629
ORF1ab/nsp6257Q257HcaGcaT22AY.60.000082
ORF1ab/nsp6257Q257HcaGcaT22AY.640.00119
ORF1ab/nsp6257Q257HcaGcaT22AY.710.00095
ORF1ab/nsp6257Q257RcAgcGg22AY.750.000112
ORF1ab/nsp6257Q257HcaGcaT22AY.810.003984
ORF1ab/nsp6257Q257HcaGcaT22AY.98.10.000097
ORF1ab/nsp6257Q257HcaGcaT22B0.000256
ORF1ab/nsp6257Q257LcAgcTg22B.10.000018
ORF1ab/nsp6257Q257delCAG---22B.1.10.000036
ORF1ab/nsp6257Q257HcaGcaT22B.1.1.2800.006173
ORF1ab/nsp6257Q257QcaGcaA22B.1.1.3180.000604
ORF1ab/nsp6257Q257QcaGcaA22B.1.1.5190.000079
ORF1ab/nsp6257Q257LcAgcTg22B.1.1.70.000002
ORF1ab/nsp6257Q257HcaGcaT22B.1.177.100.001756
ORF1ab/nsp6257Q257HcaGcaC22B.1.177.40.000422
ORF1ab/nsp6257Q257RcAgcGg22B.1.20.000018
ORF1ab/nsp6257Q257HcaGcaT22B.1.2210.000142
ORF1ab/nsp6257Q257LcAgcTg22B.1.2430.000139
ORF1ab/nsp6257Q257QcaGcaA22B.1.4040.002604
ORF1ab/nsp6257Q257QcaGcaA22B.1.4290.000047
ORF1ab/nsp6257Q257HcaGcaT12B.1.5250.000113
ORF1ab/nsp6257Q257HcaGcaC12B.1.5250.000113
ORF1ab/nsp6257Q257del1caGca-22B.1.617.20.000008
ORF1ab/nsp6257Q257XCagTag22B.1.617.20.000008
ORF1ab/nsp6257Q257delCAG---22B.1.617.20.000008
ORF1ab/nsp6257Q257RcAgcGg22B.1.617.20.000008
ORF1ab/nsp6257Q257HcaGcaT22B.1.6370.000146
ORF1ab/nsp6257Q257LcAGcTC12B.1.90.006173
ORF1ab/nsp6257Q257LcAgcTg12B.1.90.006173
ORF1ab/nsp6257Q257del1caGca-22P.10.000032
ORF1ab/nsp6257Q257HcaGcaT22P.1.120.000968
ORF1ab/nsp6257Q257HcaGcaT22P.1.140.000096
ORF1ab/nsp6257Q257QcaGcaA22P.1.140.000096
ORF1ab/nsp6257Q257HcaGcaT22P.1.70.000639
ORF1ab/nsp6257Q257HcaGcaT22P.20.000373
ORF1ab/nsp6257Q257LcAgcTg11A.10.000282
ORF1ab/nsp6257Q257HcaGcaT11AA.50.016129
ORF1ab/nsp6257Q257QcaGcaA11AY.1020.000027
ORF1ab/nsp6257Q257QcaGcaA11AY.1060.000335
ORF1ab/nsp6257Q257QcaGcaA11AY.1080.001103
ORF1ab/nsp6257Q257HcaGcaT11AY.1110.000183
ORF1ab/nsp6257Q257RcAgcGg11AY.1190.000035
ORF1ab/nsp6257Q257QcaGcaA11AY.1190.000035
ORF1ab/nsp6257Q257HcaGcaT11AY.1200.000037
ORF1ab/nsp6257Q257HcaGcaT11AY.1210.000135
ORF1ab/nsp6257Q257HcaGcaT11AY.160.00038
ORF1ab/nsp6257Q257QcaGcaA11AY.160.00038
ORF1ab/nsp6257Q257HcaGcaT11AY.20.000356
ORF1ab/nsp6257Q257HcaGcaT11AY.240.000431
ORF1ab/nsp6257Q257LcAGcTA11AY.250.000006
ORF1ab/nsp6257Q257delCAG---11AY.250.000006
ORF1ab/nsp6257Q257XCagTag11AY.250.000006
ORF1ab/nsp6257Q257HcaGcaT11AY.3.10.000085
ORF1ab/nsp6257Q257XCaGTaA11AY.340.000097
ORF1ab/nsp6257Q257XCaGTaA11AY.360.000148
ORF1ab/nsp6257Q257QcaGcaA11AY.390.000025
ORF1ab/nsp6257Q257HcaGcaT11AY.39.10.00004
ORF1ab/nsp6257Q257del2CAg--g11AY.4.50.000107
ORF1ab/nsp6257Q257HcaGcaT11AY.410.000294
ORF1ab/nsp6257Q257QcaGcaA11AY.420.00004
ORF1ab/nsp6257Q257delCAG---11AY.430.000004
ORF1ab/nsp6257Q257LcAGcTA11AY.430.000004
ORF1ab/nsp6257Q257del1caGca-11AY.440.000006
ORF1ab/nsp6257Q257XCagTag11AY.450.000122
ORF1ab/nsp6257Q257HcaGcaT11AY.450.000122
ORF1ab/nsp6257Q257HcaGcaT11AY.460.000104
ORF1ab/nsp6257Q257LcAgcTg11AY.46.40.000165
ORF1ab/nsp6257Q257HcaGcaT11AY.46.50.000198
ORF1ab/nsp6257Q257delCAG---11AY.50.000021
ORF1ab/nsp6257Q257LcAgcTg11AY.50.000021
ORF1ab/nsp6257Q257HcaGcaT11AY.5.40.000277
ORF1ab/nsp6257Q257HcaGcaT11AY.540.000095
ORF1ab/nsp6257Q257HcaGcaT11AY.560.001605
ORF1ab/nsp6257Q257QcaGcaA11AY.570.000656
ORF1ab/nsp6257Q257HcaGcaT11AY.630.000387
ORF1ab/nsp6257Q257QcaGcaA11AY.630.000387
ORF1ab/nsp6257Q257HcaGcaT11AY.670.000464
ORF1ab/nsp6257Q257RcAgcGg11AY.670.000464
ORF1ab/nsp6257Q257HcaGcaT11AY.740.000116
ORF1ab/nsp6257Q257delCAG---11AY.750.000056
ORF1ab/nsp6257Q257HcaGcaT11AY.80.000606
ORF1ab/nsp6257Q257HcaGcaT11AY.890.004902
ORF1ab/nsp6257Q257QcaGcaA11AY.90.000068
ORF1ab/nsp6257Q257RcAgcGg11AY.9.20.000037
ORF1ab/nsp6257Q257HcaGcaT11AY.9.2.10.001976
ORF1ab/nsp6257Q257XCaGTaA11AY.98.10.000048
ORF1ab/nsp6257Q257RcAgcGg11AY.98.10.000048
ORF1ab/nsp6257Q257HcaGcaT11AY.990.001049
ORF1ab/nsp6257Q257HcaGcaT11AZ.30.00152
ORF1ab/nsp6257Q257del1caGca-11B0.000128
ORF1ab/nsp6257Q257ECagGag11B.10.000009
ORF1ab/nsp6257Q257RcAgcGg11B.1.10.000018
ORF1ab/nsp6257Q257ECagGag11B.1.10.000018
ORF1ab/nsp6257Q257HcaGcaT11B.1.1.1370.0125
ORF1ab/nsp6257Q257QcaGcaA11B.1.1.1920.002309
ORF1ab/nsp6257Q257HcaGcaC11B.1.1.1960.005714
ORF1ab/nsp6257Q257HcaGcaT11B.1.1.2140.000055
ORF1ab/nsp6257Q257QcaGcaA11B.1.1.2220.000204
ORF1ab/nsp6257Q257XCagTag11B.1.1.2400.004695
ORF1ab/nsp6257Q257RcAgcGg11B.1.1.2410.00207
ORF1ab/nsp6257Q257HcaGcaT11B.1.1.2770.000759
ORF1ab/nsp6257Q257HcaGcaT11B.1.1.2840.000107
ORF1ab/nsp6257Q257HcaGcaT11B.1.1.2990.012195
ORF1ab/nsp6257Q257delCAG---11B.1.1.3150.008475
ORF1ab/nsp6257Q257QcaGcaA11B.1.1.3170.000412
ORF1ab/nsp6257Q257HcaGcaC11B.1.1.40.002976
ORF1ab/nsp6257Q257PcAgcCg11B.1.1.70.000001
ORF1ab/nsp6257Q257del2cAGc--11B.1.1.70.000001
ORF1ab/nsp6257Q257delCAG---11B.1.1.710.006061
ORF1ab/nsp6257Q257QcaGcaA11B.1.1.830.00271
ORF1ab/nsp6257Q257XCagTag11B.1.1600.000031
ORF1ab/nsp6257Q257delCAG---11B.1.1770.000013
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