CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 242 | Y242Y | Y3811Y | syn | taT | taC | 468 | 468 | 1 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242D | Y3811D | nonsyn | Tat | Gat | 92 | 90 | 0.978261 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242D | Y3811D | nonsyn | TaT | GaC | 92 | 2 | 0.0217391 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242del | Y3811del | del | TAT | --- | 47 | 47 | 1 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242C | Y3811C | nonsyn | tAt | tGt | 22 | 17 | 0.772727 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242C | Y3811C | nonsyn | tAT | tGC | 22 | 5 | 0.227273 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242E | Y3811E | nonsyn | TaT | GaA | 13 | 11 | 0.846154 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242X | Y3811X | nonsyn | taT | taG | 13 | 6 | 0.461538 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242X | Y3811X | nonsyn | taT | taA | 13 | 5 | 0.384615 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242E | Y3811E | nonsyn | TaT | GaG | 13 | 2 | 0.153846 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242X | Y3811X | nonsyn | tAT | tGA | 13 | 2 | 0.153846 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242G | Y3811G | nonsyn | TAt | GGt | 9 | 5 | 0.555556 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242G | Y3811G | nonsyn | TAT | GGC | 9 | 2 | 0.222222 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242G | Y3811G | nonsyn | TAT | GGG | 9 | 1 | 0.111111 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242G | Y3811G | nonsyn | TAT | GGA | 9 | 1 | 0.111111 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242H | Y3811H | nonsyn | Tat | Cat | 7 | 6 | 0.857143 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242H | Y3811H | nonsyn | TaT | CaC | 7 | 1 | 0.142857 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242del1 | Y3811del1 | del | taT | ta- | 6 | 3 | 0.5 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242del1 | Y3811del1 | del | TAT | -NN | 6 | 1 | 0.166667 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242del1 | Y3811del1 | del | tAt | t-t | 6 | 1 | 0.166667 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242del1 | Y3811del1 | del | TaT | -aG | 6 | 1 | 0.166667 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242F | Y3811F | nonsyn | tAt | tTt | 4 | 4 | 1 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242W | Y3811W | nonsyn | tAT | tGG | 2 | 2 | 1 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242N | Y3811N | nonsyn | Tat | Aat | 2 | 2 | 1 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242S | Y3811S | nonsyn | tAT | tCA | 2 | 1 | 0.5 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242R | Y3811R | nonsyn | TAT | CGG | 2 | 1 | 0.5 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242R | Y3811R | nonsyn | TAt | CGt | 2 | 1 | 0.5 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242S | Y3811S | nonsyn | tAt | tCt | 2 | 1 | 0.5 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242A | Y3811A | nonsyn | TAt | GCt | 2 | 1 | 0.5 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242A | Y3811A | nonsyn | TAT | GCA | 2 | 1 | 0.5 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242L | Y3811L | nonsyn | tAT | tTA | 1 | 1 | 1 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242Q | Y3811Q | nonsyn | TaT | CaG | 1 | 1 | 1 | 11696-11698 |
ORF1ab/nsp6 | 242 | Y242del2 | Y3811del2 | del | TAT | --N | 1 | 1 | 1 | 11696-11698 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 468 | 468 | All | 0.00009 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 145 | 145 | B.1.199 | 0.599174 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 90 | 92 | All | 0.000017 |
ORF1ab/nsp6 | 242 | Y242D | TaT | GaC | 2 | 92 | All | 0 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 86 | 86 | B.1.438.1 | 0.009224 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 77 | 77 | B.1.1.7 | 0.000069 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 47 | 47 | All | 0.000009 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 35 | 35 | B.1.617.2 | 0.000132 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 28 | 28 | B.1.2 | 0.000247 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 17 | 22 | All | 0.000003 |
ORF1ab/nsp6 | 242 | Y242C | tAT | tGC | 5 | 22 | All | 0.000001 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 18 | 18 | AY.46 | 0.001873 |
ORF1ab/nsp6 | 242 | Y242E | TaT | GaA | 11 | 13 | All | 0.000002 |
ORF1ab/nsp6 | 242 | Y242X | taT | taG | 6 | 13 | All | 0.000001 |
ORF1ab/nsp6 | 242 | Y242X | taT | taA | 5 | 13 | All | 0.000001 |
ORF1ab/nsp6 | 242 | Y242E | TaT | GaG | 2 | 13 | All | 0 |
ORF1ab/nsp6 | 242 | Y242X | tAT | tGA | 2 | 13 | All | 0 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp6 | 242 | Y242G | TAt | GGt | 5 | 9 | All | 0.000001 |
ORF1ab/nsp6 | 242 | Y242G | TAT | GGC | 2 | 9 | All | 0 |
ORF1ab/nsp6 | 242 | Y242G | TAT | GGG | 1 | 9 | All | 0 |
ORF1ab/nsp6 | 242 | Y242G | TAT | GGA | 1 | 9 | All | 0 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 4 | 8 | 0.222222 | |
ORF1ab/nsp6 | 242 | Y242C | tAT | tGC | 4 | 8 | 0.222222 | |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 8 | 8 | AY.5 | 0.000165 |
ORF1ab/nsp6 | 242 | Y242H | Tat | Cat | 6 | 7 | All | 0.000001 |
ORF1ab/nsp6 | 242 | Y242H | TaT | CaC | 1 | 7 | All | 0 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp6 | 242 | Y242E | TaT | GaA | 6 | 7 | P.1 | 0.000095 |
ORF1ab/nsp6 | 242 | Y242E | TaT | GaG | 1 | 7 | P.1 | 0.000016 |
ORF1ab/nsp6 | 242 | Y242del1 | taT | ta- | 3 | 6 | All | 0.000001 |
ORF1ab/nsp6 | 242 | Y242del1 | TAT | -NN | 1 | 6 | All | 0 |
ORF1ab/nsp6 | 242 | Y242del1 | TaT | -aG | 1 | 6 | All | 0 |
ORF1ab/nsp6 | 242 | Y242del1 | tAt | t-t | 1 | 6 | All | 0 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 4 | 4 | 0.222222 | |
ORF1ab/nsp6 | 242 | Y242G | TAT | GGC | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 242 | Y242D | TaT | GaC | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 242 | Y242G | TAt | GGt | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 242 | Y242F | tAt | tTt | 4 | 4 | All | 0.000001 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 4 | 4 | AY.46.5 | 0.000794 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp6 | 242 | Y242E | TaT | GaA | 3 | 4 | P.2 | 0.00056 |
ORF1ab/nsp6 | 242 | Y242E | TaT | GaG | 1 | 4 | P.2 | 0.000187 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp6 | 242 | Y242X | tAT | tGA | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp6 | 242 | Y242X | taT | taG | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp6 | 242 | Y242X | taT | taA | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp6 | 242 | Y242W | tAT | tGG | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 242 | Y242N | Tat | Aat | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 242 | Y242S | tAt | tCt | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 242 | Y242S | tAT | tCA | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 242 | Y242A | TAT | GCA | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 242 | Y242R | TAT | CGG | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 242 | Y242R | TAt | CGt | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 242 | Y242A | TAt | GCt | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 242 | Y242X | taT | taA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp6 | 242 | Y242X | taT | taG | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp6 | 242 | Y242X | tAT | tGA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 242 | Y242X | taT | taA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 2 | 2 | B.1.448 | 0.005249 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp6 | 242 | Y242G | TAT | GGA | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp6 | 242 | Y242G | TAt | GGt | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp6 | 242 | Y242G | TAt | GGt | 1 | 2 | P.2 | 0.000187 |
ORF1ab/nsp6 | 242 | Y242G | TAT | GGG | 1 | 2 | P.2 | 0.000187 |
ORF1ab/nsp6 | 242 | Y242R | TAT | CGG | 1 | 2 | P.7 | 0.004367 |
ORF1ab/nsp6 | 242 | Y242R | TAt | CGt | 1 | 2 | P.7 | 0.004367 |
ORF1ab/nsp6 | 242 | Y242F | tAt | tTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 242 | Y242F | tAt | tTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 242 | Y242Q | TaT | CaG | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 242 | Y242del2 | TAT | --N | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 242 | Y242L | tAT | tTA | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 242 | Y242S | tAT | tCA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 242 | Y242H | Tat | Cat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 242 | Y242X | taT | taA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 242 | Y242C | tAT | tGC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 242 | Y242del1 | taT | ta- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 242 | Y242A | TAt | GCt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp6 | 242 | Y242N | Tat | Aat | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp6 | 242 | Y242del1 | taT | ta- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp6 | 242 | Y242E | TaT | GaA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp6 | 242 | Y242F | tAt | tTt | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 242 | Y242del2 | TAT | --N | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 242 | Y242S | tAt | tCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | B.1.1.184 | 0.058824 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp6 | 242 | Y242del1 | TAT | -NN | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp6 | 242 | Y242X | taT | taA | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp6 | 242 | Y242L | tAT | tTA | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp6 | 242 | Y242F | tAt | tTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp6 | 242 | Y242X | taT | taG | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp6 | 242 | Y242H | TaT | CaC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 242 | Y242X | taT | taG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 242 | Y242H | Tat | Cat | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp6 | 242 | Y242H | Tat | Cat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 242 | Y242del1 | taT | ta- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 242 | Y242H | Tat | Cat | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp6 | 242 | Y242A | TAT | GCA | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp6 | 242 | Y242del1 | tAt | t-t | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 242 | Y242N | Tat | Aat | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp6 | 242 | Y242G | TAt | GGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 242 | Y242H | Tat | Cat | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp6 | 242 | Y242del | TAT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 242 | Y242E | TaT | GaA | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp6 | 242 | Y242D | Tat | Gat | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp6 | 242 | Y242Y | taT | taC | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp6 | 242 | Y242W | tAT | tGG | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp6 | 242 | Y242X | taT | taG | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp6 | 242 | Y242C | tAt | tGt | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp6 | 242 | Y242W | tAT | tGG | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp6 | 242 | Y242Q | TaT | CaG | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp6 | 242 | Y242X | taT | taG | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp6 | 242 | Y242H | Tat | Cat | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp6 | 242 | Y242del1 | TaT | -aG | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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