CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 24

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp624V24FV3593FnonsynGttTtt34753475111042-11044
ORF1ab/nsp624V24IV3593InonsynGttAtt6706680.99701511042-11044
ORF1ab/nsp624V24IV3593InonsynGtTAtC67020.0029850711042-11044
ORF1ab/nsp624V24LV3593LnonsynGttCtt144144111042-11044
ORF1ab/nsp624V24VV3593VsyngtTgtC60470.78333311042-11044
ORF1ab/nsp624V24VV3593VsyngtTgtG60110.18333311042-11044
ORF1ab/nsp624V24VV3593VsyngtTgtA6020.033333311042-11044
ORF1ab/nsp624V24GV3593GnonsyngTtgGt2929111042-11044
ORF1ab/nsp624V24AV3593AnonsyngTtgCt2222111042-11044
ORF1ab/nsp624V24delV3593deldelGTT---1919111042-11044
ORF1ab/nsp624V24del1V3593del1delgTtg-t1090.911042-11044
ORF1ab/nsp624V24del1V3593del1delGtt-tt1010.111042-11044
ORF1ab/nsp624V24SV3593SnonsynGTtAGt22111042-11044
ORF1ab/nsp624V24HV3593HnonsynGTtCAt11111042-11044
ORF1ab/nsp624V24DV3593DnonsyngTtgAt11111042-11044

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp624V24FGttTtt34753475All0.000665
ORF1ab/nsp624V24FGttTtt15721572AY.440.009568
ORF1ab/nsp624V24IGttAtt668670All0.000128
ORF1ab/nsp624V24IGtTAtC2670All0
ORF1ab/nsp624V24IGttAtt350350B.1.160.260.847458
ORF1ab/nsp624V24FGttTtt318318B.1.617.20.001197
ORF1ab/nsp624V24FGttTtt147147B.1.1.70.000132
ORF1ab/nsp624V24LGttCtt144144All0.000028
ORF1ab/nsp624V24FGttTtt143143AY.40.000223
ORF1ab/nsp624V24LGttCtt127127AY.1030.000789
ORF1ab/nsp624V24IGttAtt120120B.1.1.70.000107
ORF1ab/nsp624V24FGttTtt114114AY.610.011945
ORF1ab/nsp624V24FGttTtt9393AY.30.000925
ORF1ab/nsp624V24FGttTtt8181AY.430.000359
ORF1ab/nsp624V24FGttTtt7272AY.98.10.003487
ORF1ab/nsp624V24FGttTtt6262B.1.160.260.150121
ORF1ab/nsp624V24VgtTgtC4760All0.000009
ORF1ab/nsp624V24VgtTgtG1160All0.000002
ORF1ab/nsp624V24VgtTgtA260All0
ORF1ab/nsp624V24FGttTtt5555AY.200.002138
ORF1ab/nsp624V24IGttAtt5454AY.40.000084
ORF1ab/nsp624V24FGttTtt4343AY.46.60.003105
ORF1ab/nsp624V24FGttTtt4242B.1.1770.000553
ORF1ab/nsp624V24FGttTtt3939AY.50.000805
ORF1ab/nsp624V24FGttTtt3737AY.1030.00023
ORF1ab/nsp624V24FGttTtt3434AY.340.003297
ORF1ab/nsp624V24FGttTtt3030AY.390.000741
ORF1ab/nsp624V24GgTtgGt2929All0.000006
ORF1ab/nsp624V24FGttTtt2828AY.75.10.005049
ORF1ab/nsp624V24FGttTtt2626AY.290.00041
ORF1ab/nsp624V24FGttTtt2525B.10.000229
ORF1ab/nsp624V24FGttTtt2424AY.260.000679
ORF1ab/nsp624V24FGttTtt2323B.1.20.000203
ORF1ab/nsp624V24FGttTtt2323B.1.258.170.002391
ORF1ab/nsp624V24AgTtgCt2222All0.000004
ORF1ab/nsp624V24FGttTtt2222B.1.30.057592
ORF1ab/nsp624V24FGttTtt2222P.10.000347
ORF1ab/nsp624V24FGttTtt2020B.1.10.000363
ORF1ab/nsp624V24delGTT---1919All0.000004
ORF1ab/nsp624V24FGttTtt1818B.1.3690.005134
ORF1ab/nsp624V24FGttTtt1717B.1.351.30.014899
ORF1ab/nsp624V24IGttAtt1414B.1.1600.000437
ORF1ab/nsp624V24GgTtgGt1313AY.410.003821
ORF1ab/nsp624V24IGttAtt1313B.10.000119
ORF1ab/nsp624V24FGttTtt1313B.1.351.20.003933
ORF1ab/nsp624V24IGttAtt1313B.1.617.20.000049
ORF1ab/nsp624V24FGttTtt1212AY.250.000072
ORF1ab/nsp624V24FGttTtt1212B.1.1.5190.000477
ORF1ab/nsp624V24FGttTtt1111AY.1200.000409
ORF1ab/nsp624V24FGttTtt1111AY.90.000744
ORF1ab/nsp624V24FGttTtt1111B.1.1.3970.024775
ORF1ab/nsp624V24del1gTtg-t910All0.000002
ORF1ab/nsp624V24del1Gtt-tt110All0
ORF1ab/nsp624V24FGttTtt1010AY.1020.000265
ORF1ab/nsp624V24FGttTtt1010B.1.4740.019011
ORF1ab/nsp624V24FGttTtt99AY.4.2.10.001341
ORF1ab/nsp624V24FGttTtt99AY.460.000937
ORF1ab/nsp624V24FGttTtt99B.1.1600.000281
ORF1ab/nsp624V24VgtTgtC68B.1.1.70.000005
ORF1ab/nsp624V24VgtTgtG28B.1.1.70.000002
ORF1ab/nsp624V24FGttTtt88B.1.360.001167
ORF1ab/nsp624V24FGttTtt88B.1.5960.000697
ORF1ab/nsp624V24FGttTtt88B.1.6370.000585
ORF1ab/nsp624V24FGttTtt77AY.1170.000592
ORF1ab/nsp624V24IGttAtt77B.1.36.10.007982
ORF1ab/nsp624V24IGttAtt77B.1.5260.000165
ORF1ab/nsp624V24VgtTgtC77C.370.000812
ORF1ab/nsp624V24FGttTtt66AY.120.001896
ORF1ab/nsp624V24IGttAtt66AY.250.000036
ORF1ab/nsp624V24VgtTgtC66B.1.36.290.003104
ORF1ab/nsp624V24VgtTgtC66B.1.5090.005195
ORF1ab/nsp624V24FGttTtt66C.370.000696
ORF1ab/nsp624V24FGttTtt66D.20.00045
ORF1ab/nsp624V24FGttTtt55AY.16.10.00235
ORF1ab/nsp624V24FGttTtt55AY.39.10.000198
ORF1ab/nsp624V24LGttCtt55AY.40.000008
ORF1ab/nsp624V24IGttAtt55AY.46.50.000992
ORF1ab/nsp624V24IGttAtt55B.1.10.000091
ORF1ab/nsp624V24delGTT---55B.1.1.70.000004
ORF1ab/nsp624V24FGttTtt55B.1.177.410.0125
ORF1ab/nsp624V24FGttTtt55B.1.4270.000252
ORF1ab/nsp624V24IGttAtt55P.10.000079
ORF1ab/nsp624V24IGttAtt440.222222
ORF1ab/nsp624V24FGttTtt44AY.1000.000184
ORF1ab/nsp624V24IGttAtt44AY.1020.000106
ORF1ab/nsp624V24IGttAtt44AY.1030.000025
ORF1ab/nsp624V24FGttTtt44AY.120.20.005141
ORF1ab/nsp624V24IGttAtt44AY.440.000024
ORF1ab/nsp624V24FGttTtt44AY.540.000381
ORF1ab/nsp624V24FGttTtt44AY.910.002922
ORF1ab/nsp624V24AgTtgCt44B.1.1.70.000004
ORF1ab/nsp624V24VgtTgtA24B.1.617.20.000008
ORF1ab/nsp624V24VgtTgtC14B.1.617.20.000004
ORF1ab/nsp624V24VgtTgtG14B.1.617.20.000004
ORF1ab/nsp624V24GgTtgGt44D.20.0003
ORF1ab/nsp624V24FGttTtt33AY.1110.000549
ORF1ab/nsp624V24IGttAtt33AY.1130.000427
ORF1ab/nsp624V24FGttTtt33AY.20.001068
ORF1ab/nsp624V24FGttTtt33AY.360.000445
ORF1ab/nsp624V24FGttTtt33AY.4.20.000065
ORF1ab/nsp624V24FGttTtt33AY.420.000121
ORF1ab/nsp624V24IGttAtt33AY.430.000013
ORF1ab/nsp624V24FGttTtt33AY.470.000093
ORF1ab/nsp624V24FGttTtt33AY.520.002443
ORF1ab/nsp624V24FGttTtt33AY.60.000123
ORF1ab/nsp624V24FGttTtt33AY.710.001425
ORF1ab/nsp624V24FGttTtt33AY.940.001328
ORF1ab/nsp624V24FGttTtt33B.1.1.250.001706
ORF1ab/nsp624V24GgTtgGt33B.1.1.70.000003
ORF1ab/nsp624V24IGttAtt33B.1.20.000026
ORF1ab/nsp624V24IGttAtt33B.1.3510.000089
ORF1ab/nsp624V24AgTtgCt33B.1.3510.000089
ORF1ab/nsp624V24IGttAtt33B.1.4290.000071
ORF1ab/nsp624V24FGttTtt33B.1.4290.000071
ORF1ab/nsp624V24FGttTtt33B.1.5250.000339
ORF1ab/nsp624V24FGttTtt33B.1.617.10.000387
ORF1ab/nsp624V24IGttAtt33P.1.140.000143
ORF1ab/nsp624V24FGttTtt33P.1.140.000143
ORF1ab/nsp624V24VgtTgtC33Q.60.019868
ORF1ab/nsp624V24del1gTtg-t220.111111
ORF1ab/nsp624V24LGttCtt220.111111
ORF1ab/nsp624V24FGttTtt22A.23.10.001408
ORF1ab/nsp624V24FGttTtt22AE.80.000978
ORF1ab/nsp624V24SGTtAGt22All0
ORF1ab/nsp624V24FGttTtt22AY.1160.000574
ORF1ab/nsp624V24FGttTtt22AY.130.000322
ORF1ab/nsp624V24FGttTtt22AY.160.000759
ORF1ab/nsp624V24FGttTtt22AY.190.002281
ORF1ab/nsp624V24FGttTtt22AY.230.000139
ORF1ab/nsp624V24AgTtgCt22AY.250.000012
ORF1ab/nsp624V24FGttTtt22AY.300.000791
ORF1ab/nsp624V24AgTtgCt22AY.40.000003
ORF1ab/nsp624V24delGTT---22AY.40.000003
ORF1ab/nsp624V24VgtTgtG12AY.40.000002
ORF1ab/nsp624V24VgtTgtC12AY.40.000002
ORF1ab/nsp624V24IGttAtt22AY.4.20.000043
ORF1ab/nsp624V24FGttTtt22AY.410.000588
ORF1ab/nsp624V24GgTtgGt22AY.430.000009
ORF1ab/nsp624V24VgtTgtC12AY.430.000004
ORF1ab/nsp624V24VgtTgtG12AY.430.000004
ORF1ab/nsp624V24FGttTtt22AY.500.001599
ORF1ab/nsp624V24FGttTtt22AY.510.001818
ORF1ab/nsp624V24FGttTtt22AY.650.001066
ORF1ab/nsp624V24FGttTtt22AY.680.000547
ORF1ab/nsp624V24LGttCtt22B0.000256
ORF1ab/nsp624V24del1gTtg-t22B.10.000018
ORF1ab/nsp624V24FGttTtt22B.1.1.2220.000408
ORF1ab/nsp624V24FGttTtt22B.1.1.3110.000716
ORF1ab/nsp624V24IGttAtt22B.1.1770.000026
ORF1ab/nsp624V24IGttAtt22B.1.177.440.001038
ORF1ab/nsp624V24FGttTtt22B.1.177.570.000562
ORF1ab/nsp624V24FGttTtt22B.1.2210.000142
ORF1ab/nsp624V24IGttAtt22B.1.2210.000142
ORF1ab/nsp624V24FGttTtt22B.1.2340.000264
ORF1ab/nsp624V24VgtTgtC22B.1.3510.000059
ORF1ab/nsp624V24IGttAtt22B.1.36.170.000988
ORF1ab/nsp624V24IGttAtt22B.1.36.290.001035
ORF1ab/nsp624V24IGttAtt22B.1.4270.000101
ORF1ab/nsp624V24FGttTtt22B.1.438.10.000215
ORF1ab/nsp624V24IGtTAtC22B.1.4700.002809
ORF1ab/nsp624V24FGttTtt22B.1.670.086957
ORF1ab/nsp624V24LGttCtt22D.20.00015
ORF1ab/nsp624V24delGTT---22P.1.150.000465
ORF1ab/nsp624V24GgTtgGt110.055556
ORF1ab/nsp624V24HGTtCAt110.055556
ORF1ab/nsp624V24SGTtAGt110.055556
ORF1ab/nsp624V24DgTtgAt110.055556
ORF1ab/nsp624V24FGttTtt11A.10.000282
ORF1ab/nsp624V24FGttTtt11A.2.50.000499
ORF1ab/nsp624V24FGttTtt11A.250.018182
ORF1ab/nsp624V24DgTtgAt11All0
ORF1ab/nsp624V24HGTtCAt11All0
ORF1ab/nsp624V24IGttAtt11AT.10.005128
ORF1ab/nsp624V24VgtTgtG11AU.20.002421
ORF1ab/nsp624V24FGttTtt11AY.100.00053
ORF1ab/nsp624V24VgtTgtC11AY.1000.000046
ORF1ab/nsp624V24del1gTtg-t11AY.1020.000027
ORF1ab/nsp624V24GgTtgGt11AY.1030.000006
ORF1ab/nsp624V24VgtTgtC11AY.1030.000006
ORF1ab/nsp624V24FGttTtt11AY.1060.000335
ORF1ab/nsp624V24FGttTtt11AY.1180.000063
ORF1ab/nsp624V24FGttTtt11AY.120.2.10.000498
ORF1ab/nsp624V24AgTtgCt11AY.1210.000135
ORF1ab/nsp624V24FGttTtt11AY.1210.000135
ORF1ab/nsp624V24AgTtgCt11AY.160.00038
ORF1ab/nsp624V24IGttAtt11AY.200.000039
ORF1ab/nsp624V24FGttTtt11AY.210.001898
ORF1ab/nsp624V24IGttAtt11AY.240.000431
ORF1ab/nsp624V24AgTtgCt11AY.260.000028
ORF1ab/nsp624V24IGttAtt11AY.260.000028
ORF1ab/nsp624V24FGttTtt11AY.270.000065
ORF1ab/nsp624V24FGttTtt11AY.29.10.000221
ORF1ab/nsp624V24IGttAtt11AY.30.00001
ORF1ab/nsp624V24GgTtgGt11AY.30.00001
ORF1ab/nsp624V24FGttTtt11AY.320.000532
ORF1ab/nsp624V24FGttTtt11AY.330.000067
ORF1ab/nsp624V24IGttAtt11AY.34.10.00051
ORF1ab/nsp624V24FGttTtt11AY.350.000233
ORF1ab/nsp624V24VgtTgtG11AY.360.000148
ORF1ab/nsp624V24FGttTtt11AY.370.000316
ORF1ab/nsp624V24FGttTtt11AY.380.000499
ORF1ab/nsp624V24IGttAtt11AY.390.000025
ORF1ab/nsp624V24delGTT---11AY.430.000004
ORF1ab/nsp624V24LGttCtt11AY.430.000004
ORF1ab/nsp624V24del1gTtg-t11AY.440.000006
ORF1ab/nsp624V24VgtTgtC11AY.440.000006
ORF1ab/nsp624V24AgTtgCt11AY.440.000006
ORF1ab/nsp624V24LGttCtt11AY.440.000006
ORF1ab/nsp624V24FGttTtt11AY.450.000122
ORF1ab/nsp624V24IGttAtt11AY.450.000122
ORF1ab/nsp624V24IGttAtt11AY.470.000031
ORF1ab/nsp624V24AgTtgCt11AY.490.003195
ORF1ab/nsp624V24IGttAtt11AY.50.000021
ORF1ab/nsp624V24FGttTtt11AY.550.000917
ORF1ab/nsp624V24FGttTtt11AY.580.000907
ORF1ab/nsp624V24VgtTgtG11AY.60.000041
ORF1ab/nsp624V24AgTtgCt11AY.60.000041
ORF1ab/nsp624V24GgTtgGt11AY.620.000436
ORF1ab/nsp624V24delGTT---11AY.660.00107
ORF1ab/nsp624V24FGttTtt11AY.690.000187
ORF1ab/nsp624V24VgtTgtC11AY.70.000196
ORF1ab/nsp624V24IGttAtt11AY.7.20.000559
ORF1ab/nsp624V24FGttTtt11AY.740.000116
ORF1ab/nsp624V24FGttTtt11AY.750.000056
ORF1ab/nsp624V24FGttTtt11AY.780.001541
ORF1ab/nsp624V24FGttTtt11AY.790.001211
ORF1ab/nsp624V24IGttAtt11AY.9.20.000037
ORF1ab/nsp624V24FGttTtt11AY.920.000287
ORF1ab/nsp624V24FGttTtt11AY.980.000079
ORF1ab/nsp624V24LGttCtt11AY.980.000079
ORF1ab/nsp624V24FGttTtt11AY.99.20.000092
ORF1ab/nsp624V24FGttTtt11B0.000128
ORF1ab/nsp624V24GgTtgGt11B0.000128
ORF1ab/nsp624V24VgtTgtC11B0.000128
ORF1ab/nsp624V24LGttCtt11B.10.000009
ORF1ab/nsp624V24delGTT---11B.10.000009
ORF1ab/nsp624V24GgTtgGt11B.10.000009
ORF1ab/nsp624V24SGTtAGt11B.10.000009
ORF1ab/nsp624V24AgTtgCt11B.10.000009
ORF1ab/nsp624V24VgtTgtC11B.10.000009
ORF1ab/nsp624V24VgtTgtG11B.1.10.000018
ORF1ab/nsp624V24AgTtgCt11B.1.1.10.000327
ORF1ab/nsp624V24delGTT---11B.1.1.2360.006897
ORF1ab/nsp624V24FGttTtt11B.1.1.2840.000107
ORF1ab/nsp624V24FGttTtt11B.1.1.3060.000438
ORF1ab/nsp624V24VgtTgtC11B.1.1.3170.000412
ORF1ab/nsp624V24IGttAtt11B.1.1.3180.000302
ORF1ab/nsp624V24AgTtgCt11B.1.1.3690.000446
ORF1ab/nsp624V24IGttAtt11B.1.1.370.000193
ORF1ab/nsp624V24FGttTtt11B.1.1.3710.010417
ORF1ab/nsp624V24FGttTtt11B.1.1.4200.001006
ORF1ab/nsp624V24AgTtgCt11B.1.1.4480.002033
ORF1ab/nsp624V24FGttTtt11B.1.1.630.000386
ORF1ab/nsp624V24LGttCtt11B.1.1.70.000001
ORF1ab/nsp624V24del1gTtg-t11B.1.1600.000031
ORF1ab/nsp624V24IGttAtt11B.1.160.160.000929
ORF1ab/nsp624V24FGttTtt11B.1.160.160.000929
ORF1ab/nsp624V24delGTT---11B.1.177.150.000631
ORF1ab/nsp624V24FGttTtt11B.1.177.160.000664
ORF1ab/nsp624V24FGttTtt11B.1.177.310.011494
ORF1ab/nsp624V24delGTT---11B.1.177.40.000211
ORF1ab/nsp624V24FGttTtt11B.1.177.580.001332
ORF1ab/nsp624V24FGttTtt11B.1.177.620.001192
ORF1ab/nsp624V24FGttTtt11B.1.177.860.000183
ORF1ab/nsp624V24delGTT---11B.1.177.90.001332
ORF1ab/nsp624V24VgtTgtG11B.1.20.000009
ORF1ab/nsp624V24IGttAtt11B.1.2220.001692
ORF1ab/nsp624V24FGttTtt11B.1.2220.001692
ORF1ab/nsp624V24FGttTtt11B.1.2320.000537
ORF1ab/nsp624V24FGttTtt11B.1.2390.001221
ORF1ab/nsp624V24VgtTgtC11B.1.2430.00007
ORF1ab/nsp624V24IGttAtt11B.1.2430.00007
ORF1ab/nsp624V24FGttTtt11B.1.2430.00007
ORF1ab/nsp624V24FGttTtt11B.1.258.110.000396
ORF1ab/nsp624V24IGttAtt11B.1.2600.003344
ORF1ab/nsp624V24del1gTtg-t11B.1.3290.000608
ORF1ab/nsp624V24VgtTgtC11B.1.3320.003497
ORF1ab/nsp624V24FGttTtt11B.1.3400.004292
ORF1ab/nsp624V24FGttTtt11B.1.3510.00003
ORF1ab/nsp624V24FGttTtt11B.1.36.290.000517
ORF1ab/nsp624V24del1gTtg-t11B.1.3690.000285
ORF1ab/nsp624V24VgtTgtC11B.1.4290.000024
ORF1ab/nsp624V24FGttTtt11B.1.4530.003236
ORF1ab/nsp624V24FGttTtt11B.1.4730.019231
ORF1ab/nsp624V24GgTtgGt11B.1.5090.000866
ORF1ab/nsp624V24FGttTtt11B.1.5230.002451
ORF1ab/nsp624V24VgtTgtG11B.1.5250.000113
ORF1ab/nsp624V24VgtTgtC11B.1.5260.000024
ORF1ab/nsp624V24FGttTtt11B.1.5440.006024
ORF1ab/nsp624V24del1Gtt-tt11B.1.5640.000426
ORF1ab/nsp624V24FGttTtt11B.1.6090.000479
ORF1ab/nsp624V24VgtTgtC11B.1.617.10.000129
ORF1ab/nsp624V24AgTtgCt11B.1.617.20.000004
ORF1ab/nsp624V24delGTT---11B.1.6210.000089
ORF1ab/nsp624V24FGttTtt11B.1.621.10.000506
ORF1ab/nsp624V24VgtTgtC11B.1.6280.000352
ORF1ab/nsp624V24IGttAtt11B.1.6370.000073
ORF1ab/nsp624V24FGttTtt11B.40.002208
ORF1ab/nsp624V24VgtTgtC11C.160.00106
ORF1ab/nsp624V24LGttCtt11C.360.000911
ORF1ab/nsp624V24delGTT---11N.40.004255
ORF1ab/nsp624V24FGttTtt11P.1.120.000484
ORF1ab/nsp624V24FGttTtt11P.1.20.001156
ORF1ab/nsp624V24FGttTtt11P.20.000187
ORF1ab/nsp624V24IGttAtt11Q.10.000126
ORF1ab/nsp624V24FGttTtt11Q.10.000126
ORF1ab/nsp624V24delGTT---11Q.10.000126
ORF1ab/nsp624V24IGttAtt11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.