CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 222

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6222T222TT3791TsynacTacC3132770.88498411636-11638
ORF1ab/nsp6222T222TT3791TsynacTacG313310.099041511636-11638
ORF1ab/nsp6222T222TT3791TsynacTacA31350.015974411636-11638
ORF1ab/nsp6222T222delT3791deldelACT---103103111636-11638
ORF1ab/nsp6222T222NT3791NnonsynaCtaAt52500.96153811636-11638
ORF1ab/nsp6222T222NT3791NnonsynaCTaAC5220.038461511636-11638
ORF1ab/nsp6222T222IT3791InonsynaCtaTt2424111636-11638
ORF1ab/nsp6222T222ST3791SnonsynActTct1414111636-11638
ORF1ab/nsp6222T222AT3791AnonsynActGct1111111636-11638
ORF1ab/nsp6222T222del2T3791del2delaCTa--740.57142911636-11638
ORF1ab/nsp6222T222del2T3791del2delACt--t720.28571411636-11638
ORF1ab/nsp6222T222del2T3791del2delACTG--710.14285711636-11638
ORF1ab/nsp6222T222PT3791PnonsynActCct530.611636-11638
ORF1ab/nsp6222T222PT3791PnonsynAcTCcC520.411636-11638
ORF1ab/nsp6222T222HT3791HnonsynACTCAC420.511636-11638
ORF1ab/nsp6222T222HT3791HnonsynACtCAt420.511636-11638
ORF1ab/nsp6222T222del1T3791del1delAct-ct320.66666711636-11638
ORF1ab/nsp6222T222del1T3791del1delACtG-t310.33333311636-11638
ORF1ab/nsp6222T222KT3791KnonsynaCTaAG210.511636-11638
ORF1ab/nsp6222T222KT3791KnonsynaCTaAA210.511636-11638
ORF1ab/nsp6222T222VT3791VnonsynACTGTG11111636-11638
ORF1ab/nsp6222T222YT3791YnonsynACtTAt11111636-11638

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6222T222TacTacC277313All0.000053
ORF1ab/nsp6222T222TacTacG31313All0.000006
ORF1ab/nsp6222T222TacTacA5313All0.000001
ORF1ab/nsp6222T222TacTacC164164B.1.1.710.993939
ORF1ab/nsp6222T222delACT---103103All0.00002
ORF1ab/nsp6222T222NaCtaAt5052All0.00001
ORF1ab/nsp6222T222NaCTaAC252All0
ORF1ab/nsp6222T222NaCtaAt2727AY.4.2.10.004023
ORF1ab/nsp6222T222TacTacC1426B.1.1.70.000013
ORF1ab/nsp6222T222TacTacG1226B.1.1.70.000011
ORF1ab/nsp6222T222IaCtaTt2424All0.000005
ORF1ab/nsp6222T222TacTacC1921AY.40.00003
ORF1ab/nsp6222T222TacTacA121AY.40.000002
ORF1ab/nsp6222T222TacTacG121AY.40.000002
ORF1ab/nsp6222T222delACT---2020B.1.617.20.000075
ORF1ab/nsp6222T222TacTacC1919B.1.1.4090.053824
ORF1ab/nsp6222T222delACT---1616B.1.1.70.000014
ORF1ab/nsp6222T222TacTacC1115B.10.000101
ORF1ab/nsp6222T222TacTacA215B.10.000018
ORF1ab/nsp6222T222TacTacG215B.10.000018
ORF1ab/nsp6222T222SActTct1414All0.000003
ORF1ab/nsp6222T222AActGct1111All0.000002
ORF1ab/nsp6222T222delACT---1010B.10.000092
ORF1ab/nsp6222T222TacTacC89AY.450.000973
ORF1ab/nsp6222T222TacTacG19AY.450.000122
ORF1ab/nsp6222T222TacTacC78B.1.1770.000092
ORF1ab/nsp6222T222TacTacG18B.1.1770.000013
ORF1ab/nsp6222T222del2aCTa--47All0.000001
ORF1ab/nsp6222T222del2ACt--t27All0
ORF1ab/nsp6222T222del2ACTG--17All0
ORF1ab/nsp6222T222delACT---66AY.75.10.001082
ORF1ab/nsp6222T222PActCct35All0.000001
ORF1ab/nsp6222T222PAcTCcC25All0
ORF1ab/nsp6222T222delACT---55AY.40.000008
ORF1ab/nsp6222T222NaCtaAt55AY.420.000201
ORF1ab/nsp6222T222delACT---55AY.430.000022
ORF1ab/nsp6222T222TacTacC55B.1.10.000091
ORF1ab/nsp6222T222TacTacC55B.1.20.000044
ORF1ab/nsp6222T222HACtCAt240.111111
ORF1ab/nsp6222T222NaCtaAt240.111111
ORF1ab/nsp6222T222NaCTaAC240.111111
ORF1ab/nsp6222T222HACTCAC240.111111
ORF1ab/nsp6222T222PAcTCcC240.111111
ORF1ab/nsp6222T222PActCct240.111111
ORF1ab/nsp6222T222HACTCAC24All0
ORF1ab/nsp6222T222HACtCAt24All0
ORF1ab/nsp6222T222delACT---44AY.9.20.000147
ORF1ab/nsp6222T222IaCtaTt44B.10.000037
ORF1ab/nsp6222T222SActTct44P.10.000063
ORF1ab/nsp6222T222del1Act-ct23All0
ORF1ab/nsp6222T222del1ACtG-t13All0
ORF1ab/nsp6222T222TacTacG23AY.1020.000053
ORF1ab/nsp6222T222TacTacC13AY.1020.000027
ORF1ab/nsp6222T222delACT---33AY.260.000085
ORF1ab/nsp6222T222delACT---33AY.330.0002
ORF1ab/nsp6222T222AActGct33AY.40.000005
ORF1ab/nsp6222T222IaCtaTt33B.1.1.70.000003
ORF1ab/nsp6222T222AActGct33B.1.1.70.000003
ORF1ab/nsp6222T222delACT---33B.1.20.000026
ORF1ab/nsp6222T222TacTacC23B.1.5260.000047
ORF1ab/nsp6222T222TacTacG13B.1.5260.000024
ORF1ab/nsp6222T222NaCtaAt33B.1.617.20.000011
ORF1ab/nsp6222T222TacTacC23B.1.617.20.000008
ORF1ab/nsp6222T222TacTacG13B.1.617.20.000004
ORF1ab/nsp6222T222TacTacG33B.1.6210.000266
ORF1ab/nsp6222T222TacTacC220.111111
ORF1ab/nsp6222T222KaCTaAA12All0
ORF1ab/nsp6222T222KaCTaAG12All0
ORF1ab/nsp6222T222NaCtaAt22AY.120.000632
ORF1ab/nsp6222T222TacTacG22AY.1200.000074
ORF1ab/nsp6222T222delACT---22AY.420.00008
ORF1ab/nsp6222T222TacTacC12AY.440.000006
ORF1ab/nsp6222T222TacTacG12AY.440.000006
ORF1ab/nsp6222T222delACT---22AY.650.001066
ORF1ab/nsp6222T222delACT---22AY.710.00095
ORF1ab/nsp6222T222NaCtaAt22B.1.1.70.000002
ORF1ab/nsp6222T222IaCtaTt22B.1.20.000018
ORF1ab/nsp6222T222SActTct22B.1.4290.000047
ORF1ab/nsp6222T222TacTacC22P.10.000032
ORF1ab/nsp6222T222SActTct11A0.000387
ORF1ab/nsp6222T222delACT---11A0.000387
ORF1ab/nsp6222T222NaCtaAt11A.2.5.30.010309
ORF1ab/nsp6222T222YACtTAt11All0
ORF1ab/nsp6222T222VACTGTG11All0
ORF1ab/nsp6222T222TacTacC11AM.40.003571
ORF1ab/nsp6222T222TacTacC11AU.30.00211
ORF1ab/nsp6222T222NaCtaAt11AY.1020.000027
ORF1ab/nsp6222T222TacTacC11AY.1030.000006
ORF1ab/nsp6222T222IaCtaTt11AY.1030.000006
ORF1ab/nsp6222T222delACT---11AY.240.000431
ORF1ab/nsp6222T222del2ACTG--11AY.240.000431
ORF1ab/nsp6222T222TacTacC11AY.250.000006
ORF1ab/nsp6222T222SActTct11AY.250.000006
ORF1ab/nsp6222T222TacTacC11AY.260.000028
ORF1ab/nsp6222T222TacTacG11AY.30.00001
ORF1ab/nsp6222T222delACT---11AY.340.000097
ORF1ab/nsp6222T222delACT---11AY.370.000316
ORF1ab/nsp6222T222del2aCTa--11AY.380.000499
ORF1ab/nsp6222T222NaCtaAt11AY.4.20.000022
ORF1ab/nsp6222T222AActGct11AY.4.20.000022
ORF1ab/nsp6222T222delACT---11AY.4.50.000107
ORF1ab/nsp6222T222del2aCTa--11AY.430.000004
ORF1ab/nsp6222T222TacTacC11AY.430.000004
ORF1ab/nsp6222T222AActGct11AY.440.000006
ORF1ab/nsp6222T222KaCTaAA11AY.440.000006
ORF1ab/nsp6222T222NaCtaAt11AY.440.000006
ORF1ab/nsp6222T222PActCct11AY.470.000031
ORF1ab/nsp6222T222NaCtaAt11AY.470.000031
ORF1ab/nsp6222T222delACT---11AY.470.000031
ORF1ab/nsp6222T222TacTacG11AY.50.000021
ORF1ab/nsp6222T222VACTGTG11AY.550.000917
ORF1ab/nsp6222T222delACT---11AY.620.000436
ORF1ab/nsp6222T222TacTacC11AY.670.000464
ORF1ab/nsp6222T222TacTacC11AY.70.000196
ORF1ab/nsp6222T222delACT---11AY.750.000056
ORF1ab/nsp6222T222TacTacC11AY.750.000056
ORF1ab/nsp6222T222delACT---11AY.780.001541
ORF1ab/nsp6222T222NaCtaAt11AY.90.000068
ORF1ab/nsp6222T222delACT---11AY.90.000068
ORF1ab/nsp6222T222delACT---11AY.9.10.000084
ORF1ab/nsp6222T222del2aCTa--11AY.9.10.000084
ORF1ab/nsp6222T222YACtTAt11AY.9.20.000037
ORF1ab/nsp6222T222AActGct11AY.9.20.000037
ORF1ab/nsp6222T222TacTacC11AY.980.000079
ORF1ab/nsp6222T222delACT---11AY.98.10.000048
ORF1ab/nsp6222T222IaCtaTt11B0.000128
ORF1ab/nsp6222T222delACT---11B0.000128
ORF1ab/nsp6222T222TacTacC11B0.000128
ORF1ab/nsp6222T222del1Act-ct11B.10.000009
ORF1ab/nsp6222T222delACT---11B.1.1.10.000327
ORF1ab/nsp6222T222IaCtaTt11B.1.1.150.013514
ORF1ab/nsp6222T222SActTct11B.1.1.2070.001182
ORF1ab/nsp6222T222TacTacG11B.1.1.2630.001558
ORF1ab/nsp6222T222IaCtaTt11B.1.1.2840.000107
ORF1ab/nsp6222T222IaCtaTt11B.1.1.390.00051
ORF1ab/nsp6222T222IaCtaTt11B.1.1.4170.002703
ORF1ab/nsp6222T222delACT---11B.1.1.4320.001266
ORF1ab/nsp6222T222IaCtaTt11B.1.1.5190.00004
ORF1ab/nsp6222T222SActTct11B.1.1.70.000001
ORF1ab/nsp6222T222SActTct11B.1.1.700.000341
ORF1ab/nsp6222T222delACT---11B.1.1.710.006061
ORF1ab/nsp6222T222IaCtaTt11B.1.1600.000031
ORF1ab/nsp6222T222TacTacC11B.1.160.260.002421
ORF1ab/nsp6222T222delACT---11B.1.1610.017241
ORF1ab/nsp6222T222SActTct11B.1.177.150.000631
ORF1ab/nsp6222T222TacTacC11B.1.177.210.000076
ORF1ab/nsp6222T222delACT---11B.1.177.830.001481
ORF1ab/nsp6222T222SActTct11B.1.20.000009
ORF1ab/nsp6222T222del2ACt--t11B.1.20.000009
ORF1ab/nsp6222T222IaCtaTt11B.1.230.006061
ORF1ab/nsp6222T222NaCtaAt11B.1.2430.00007
ORF1ab/nsp6222T222IaCtaTt11B.1.3380.008621
ORF1ab/nsp6222T222TacTacG11B.1.360.000146
ORF1ab/nsp6222T222IaCtaTt11B.1.3750.00082
ORF1ab/nsp6222T222TacTacC11B.1.4000.000429
ORF1ab/nsp6222T222del1ACtG-t11B.1.4280.00102
ORF1ab/nsp6222T222NaCtaAt11B.1.4290.000024
ORF1ab/nsp6222T222TacTacC11B.1.5250.000113
ORF1ab/nsp6222T222IaCtaTt11B.1.5250.000113
ORF1ab/nsp6222T222TacTacA11B.1.5280.047619
ORF1ab/nsp6222T222IaCtaTt11B.1.5850.027778
ORF1ab/nsp6222T222del2aCTa--11B.1.5960.000087
ORF1ab/nsp6222T222NaCtaAt11B.1.5960.000087
ORF1ab/nsp6222T222IaCtaTt11B.1.6060.006024
ORF1ab/nsp6222T222del1Act-ct11B.1.617.20.000004
ORF1ab/nsp6222T222SActTct11B.1.617.20.000004
ORF1ab/nsp6222T222AActGct11B.1.617.20.000004
ORF1ab/nsp6222T222KaCTaAG11B.1.6190.000871
ORF1ab/nsp6222T222IaCtaTt11B.1.6370.000073
ORF1ab/nsp6222T222TacTacA11B.400.000364
ORF1ab/nsp6222T222AActGct11B.6.60.000889
ORF1ab/nsp6222T222delACT---11C.360.000911
ORF1ab/nsp6222T222delACT---11N.40.004255
ORF1ab/nsp6222T222del2ACt--t11P.10.000016
ORF1ab/nsp6222T222delACT---11P.1.10.000318
ORF1ab/nsp6222T222delACT---11Q.20.000613