CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 216 & Codon = ttT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6216F216FF3785FsynttCttT95579557111618-11620

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6216F216FttCttT95579557All0.001828
ORF1ab/nsp6216F216FttCttT26332633AY.40.004098
ORF1ab/nsp6216F216FttCttT25872587B.1.1.70.002316
ORF1ab/nsp6216F216FttCttT467467B.1.1600.014565
ORF1ab/nsp6216F216FttCttT409409B.1.20.003601
ORF1ab/nsp6216F216FttCttT302302B.1.617.20.001137
ORF1ab/nsp6216F216FttCttT185185AY.680.050643
ORF1ab/nsp6216F216FttCttT182182AY.440.001108
ORF1ab/nsp6216F216FttCttT119119AY.1020.003155
ORF1ab/nsp6216F216FttCttT118118B.10.001081
ORF1ab/nsp6216F216FttCttT112112AY.430.000496
ORF1ab/nsp6216F216FttCttT9898AY.390.002422
ORF1ab/nsp6216F216FttCttT9292AY.1030.000571
ORF1ab/nsp6216F216FttCttT9191P.10.001434
ORF1ab/nsp6216F216FttCttT9090AY.250.000541
ORF1ab/nsp6216F216FttCttT8888B.1.360.012839
ORF1ab/nsp6216F216FttCttT8787AY.470.002706
ORF1ab/nsp6216F216FttCttT8484B.1.10.001524
ORF1ab/nsp6216F216FttCttT8181AY.200.003148
ORF1ab/nsp6216F216FttCttT6060C.350.04644
ORF1ab/nsp6216F216FttCttT5656B.1.1.5190.002224
ORF1ab/nsp6216F216FttCttT5555AY.39.10.002179
ORF1ab/nsp6216F216FttCttT5454B.1.1.4860.085174
ORF1ab/nsp6216F216FttCttT5454B.1.36.290.027936
ORF1ab/nsp6216F216FttCttT4747B.1.177.820.022434
ORF1ab/nsp6216F216FttCttT4646B.1.2210.003268
ORF1ab/nsp6216F216FttCttT4343AY.30.000428
ORF1ab/nsp6216F216FttCttT3939AY.1190.001377
ORF1ab/nsp6216F216FttCttT3636B.1.3510.00107
ORF1ab/nsp6216F216FttCttT3636P.1.160.013468
ORF1ab/nsp6216F216FttCttT3434AY.320.018104
ORF1ab/nsp6216F216FttCttT3434B.1.4290.0008
ORF1ab/nsp6216F216FttCttT3131AY.50.00064
ORF1ab/nsp6216F216FttCttT3131B.1.1.2391
ORF1ab/nsp6216F216FttCttT2929AY.1200.001078
ORF1ab/nsp6216F216FttCttT2929B.1.5260.000682
ORF1ab/nsp6216F216FttCttT2626AY.1000.001196
ORF1ab/nsp6216F216FttCttT2626B.1.1.2140.001442
ORF1ab/nsp6216F216FttCttT2424P.20.004479
ORF1ab/nsp6216F216FttCttT2323AY.690.004293
ORF1ab/nsp6216F216FttCttT2121B.1.1770.000277
ORF1ab/nsp6216F216FttCttT2121B.1.4270.00106
ORF1ab/nsp6216F216FttCttT1919B.1.1.4640.027982
ORF1ab/nsp6216F216FttCttT1818AY.420.000724
ORF1ab/nsp6216F216FttCttT1818B.1.1.280.005602
ORF1ab/nsp6216F216FttCttT1717B.1.36.240.104938
ORF1ab/nsp6216F216FttCttT1717P.1.140.000813
ORF1ab/nsp6216F216FttCttT1717Q.80.002803
ORF1ab/nsp6216F216FttCttT1616AY.1170.001352
ORF1ab/nsp6216F216FttCttT1616B.1.258.140.015686
ORF1ab/nsp6216F216FttCttT1515B.1.2430.001044
ORF1ab/nsp6216F216FttCttT1515Q.40.006821
ORF1ab/nsp6216F216FttCttT1414B.1.1.3520.4375
ORF1ab/nsp6216F216FttCttT1414B.1.177.770.010167
ORF1ab/nsp6216F216FttCttT1414B.1.36.370.038889
ORF1ab/nsp6216F216FttCttT1212B.1.177.860.002201
ORF1ab/nsp6216F216FttCttT1111AY.460.001145
ORF1ab/nsp6216F216FttCttT1111B.1.258.170.001144
ORF1ab/nsp6216F216FttCttT1111B.1.5960.000959
ORF1ab/nsp6216F216FttCttT1010AY.3.10.000853
ORF1ab/nsp6216F216FttCttT1010AY.99.20.000922
ORF1ab/nsp6216F216FttCttT1010B.1.1.4160.00905
ORF1ab/nsp6216F216FttCttT1010B.1.428.20.333333
ORF1ab/nsp6216F216FttCttT99A.210.024931
ORF1ab/nsp6216F216FttCttT99AY.1210.001218
ORF1ab/nsp6216F216FttCttT99AY.260.000255
ORF1ab/nsp6216F216FttCttT99AY.330.000601
ORF1ab/nsp6216F216FttCttT99AY.4.20.000195
ORF1ab/nsp6216F216FttCttT99B.1.1.2940.011392
ORF1ab/nsp6216F216FttCttT99B.1.2580.000599
ORF1ab/nsp6216F216FttCttT99C.360.008197
ORF1ab/nsp6216F216FttCttT88AY.230.000558
ORF1ab/nsp6216F216FttCttT88AY.610.000838
ORF1ab/nsp6216F216FttCttT88AY.7.10.000902
ORF1ab/nsp6216F216FttCttT88AY.75.10.001442
ORF1ab/nsp6216F216FttCttT88B.1.1.330.003367
ORF1ab/nsp6216F216FttCttT88B.1.6230.004292
ORF1ab/nsp6216F216FttCttT88Q.30.00116
ORF1ab/nsp6216F216FttCttT77AY.450.000852
ORF1ab/nsp6216F216FttCttT77AY.540.000667
ORF1ab/nsp6216F216FttCttT77AY.670.00325
ORF1ab/nsp6216F216FttCttT77AY.90.000473
ORF1ab/nsp6216F216FttCttT77AY.950.005327
ORF1ab/nsp6216F216FttCttT77AY.980.000553
ORF1ab/nsp6216F216FttCttT77B.1.177.40.001477
ORF1ab/nsp6216F216FttCttT77B.1.2340.000924
ORF1ab/nsp6216F216FttCttT66AY.410.001764
ORF1ab/nsp6216F216FttCttT66AY.60.000247
ORF1ab/nsp6216F216FttCttT66B.1.1.2840.000644
ORF1ab/nsp6216F216FttCttT66B.1.351.20.001815
ORF1ab/nsp6216F216FttCttT66B.1.466.20.002347
ORF1ab/nsp6216F216FttCttT66B.1.5640.002555
ORF1ab/nsp6216F216FttCttT66C.370.000696
ORF1ab/nsp6216F216FttCttT66P.1.170.000971
ORF1ab/nsp6216F216FttCttT66P.1.20.006936
ORF1ab/nsp6216F216FttCttT55A.23.10.003521
ORF1ab/nsp6216F216FttCttT55AY.290.000079
ORF1ab/nsp6216F216FttCttT55AY.350.001165
ORF1ab/nsp6216F216FttCttT55B0.000639
ORF1ab/nsp6216F216FttCttT55B.1.1.10.001633
ORF1ab/nsp6216F216FttCttT55B.1.1.2550.015152
ORF1ab/nsp6216F216FttCttT55B.1.1.3480.003981
ORF1ab/nsp6216F216FttCttT55B.1.1.5280.024038
ORF1ab/nsp6216F216FttCttT55B.1.160.300.014881
ORF1ab/nsp6216F216FttCttT55B.1.177.440.002595
ORF1ab/nsp6216F216FttCttT55B.1.177.620.005959
ORF1ab/nsp6216F216FttCttT55B.1.6190.004355
ORF1ab/nsp6216F216FttCttT44AY.1130.00057
ORF1ab/nsp6216F216FttCttT44AY.270.000259
ORF1ab/nsp6216F216FttCttT44AY.360.000593
ORF1ab/nsp6216F216FttCttT44AY.850.001709
ORF1ab/nsp6216F216FttCttT44AY.98.10.000194
ORF1ab/nsp6216F216FttCttT44B.1.1.2220.000816
ORF1ab/nsp6216F216FttCttT44B.1.1.250.002274
ORF1ab/nsp6216F216FttCttT44B.1.160.150.019802
ORF1ab/nsp6216F216FttCttT44B.1.2400.000862
ORF1ab/nsp6216F216FttCttT44B.1.36.100.019139
ORF1ab/nsp6216F216FttCttT44B.1.5430.04
ORF1ab/nsp6216F216FttCttT44B.1.5760.003626
ORF1ab/nsp6216F216FttCttT44B.1.6210.000354
ORF1ab/nsp6216F216FttCttT33AY.1160.00086
ORF1ab/nsp6216F216FttCttT33AY.16.10.00141
ORF1ab/nsp6216F216FttCttT33AY.340.000291
ORF1ab/nsp6216F216FttCttT33AY.46.30.002801
ORF1ab/nsp6216F216FttCttT33AY.46.40.000494
ORF1ab/nsp6216F216FttCttT33AY.710.001425
ORF1ab/nsp6216F216FttCttT33AY.920.000862
ORF1ab/nsp6216F216FttCttT33B.1.1.3060.001315
ORF1ab/nsp6216F216FttCttT33B.1.1.390.001529
ORF1ab/nsp6216F216FttCttT33B.1.177.500.014085
ORF1ab/nsp6216F216FttCttT33B.1.2600.010033
ORF1ab/nsp6216F216FttCttT33B.1.3960.002117
ORF1ab/nsp6216F216FttCttT33B.1.617.10.000387
ORF1ab/nsp6216F216FttCttT33B.1.6370.000219
ORF1ab/nsp6216F216FttCttT220.111111
ORF1ab/nsp6216F216FttCttT22A0.000774
ORF1ab/nsp6216F216FttCttT22A.280.005291
ORF1ab/nsp6216F216FttCttT22A.50.003846
ORF1ab/nsp6216F216FttCttT22AY.1060.00067
ORF1ab/nsp6216F216FttCttT22AY.116.10.000623
ORF1ab/nsp6216F216FttCttT22AY.1180.000125
ORF1ab/nsp6216F216FttCttT22AY.150.004444
ORF1ab/nsp6216F216FttCttT22AY.20.000712
ORF1ab/nsp6216F216FttCttT22AY.29.10.000441
ORF1ab/nsp6216F216FttCttT22AY.34.10.00102
ORF1ab/nsp6216F216FttCttT22AY.380.000999
ORF1ab/nsp6216F216FttCttT22AY.4.50.000215
ORF1ab/nsp6216F216FttCttT22AY.400.001929
ORF1ab/nsp6216F216FttCttT22AY.46.20.001271
ORF1ab/nsp6216F216FttCttT22AY.480.00093
ORF1ab/nsp6216F216FttCttT22AY.5.30.000675
ORF1ab/nsp6216F216FttCttT22AY.550.001835
ORF1ab/nsp6216F216FttCttT22AY.560.00321
ORF1ab/nsp6216F216FttCttT22AY.570.001312
ORF1ab/nsp6216F216FttCttT22AY.640.00119
ORF1ab/nsp6216F216FttCttT22AY.740.000231
ORF1ab/nsp6216F216FttCttT22AY.750.000112
ORF1ab/nsp6216F216FttCttT22AY.9.10.000167
ORF1ab/nsp6216F216FttCttT22AY.910.001461
ORF1ab/nsp6216F216FttCttT22AZ.20.001642
ORF1ab/nsp6216F216FttCttT22B.1.1.2770.001517
ORF1ab/nsp6216F216FttCttT22B.1.1.3120.003824
ORF1ab/nsp6216F216FttCttT22B.1.1.3660.031746
ORF1ab/nsp6216F216FttCttT22B.1.1.370.000386
ORF1ab/nsp6216F216FttCttT22B.1.1.3800.019608
ORF1ab/nsp6216F216FttCttT22B.1.130.004751
ORF1ab/nsp6216F216FttCttT22B.1.160.140.004237
ORF1ab/nsp6216F216FttCttT22B.1.160.250.022222
ORF1ab/nsp6216F216FttCttT22B.1.177.460.001837
ORF1ab/nsp6216F216FttCttT22B.1.177.70.00033
ORF1ab/nsp6216F216FttCttT22B.1.177.720.00678
ORF1ab/nsp6216F216FttCttT22B.1.177.810.000379
ORF1ab/nsp6216F216FttCttT22B.1.177.870.001456
ORF1ab/nsp6216F216FttCttT22B.1.214.20.001199
ORF1ab/nsp6216F216FttCttT22B.1.36.260.005714
ORF1ab/nsp6216F216FttCttT22B.1.4000.000858
ORF1ab/nsp6216F216FttCttT22B.1.4700.002809
ORF1ab/nsp6216F216FttCttT22B.1.5870.003795
ORF1ab/nsp6216F216FttCttT22B.1.6090.000959
ORF1ab/nsp6216F216FttCttT22B.1.621.10.001012
ORF1ab/nsp6216F216FttCttT22D.20.00015
ORF1ab/nsp6216F216FttCttT22P.1.150.000465
ORF1ab/nsp6216F216FttCttT22P.60.006289
ORF1ab/nsp6216F216FttCttT22R.10.00018
ORF1ab/nsp6216F216FttCttT11A.10.000282
ORF1ab/nsp6216F216FttCttT11A.2.5.20.001572
ORF1ab/nsp6216F216FttCttT11AY.10.000396
ORF1ab/nsp6216F216FttCttT11AY.1080.001103
ORF1ab/nsp6216F216FttCttT11AY.110.001339
ORF1ab/nsp6216F216FttCttT11AY.1140.000231
ORF1ab/nsp6216F216FttCttT11AY.130.000161
ORF1ab/nsp6216F216FttCttT11AY.140.000088
ORF1ab/nsp6216F216FttCttT11AY.160.00038
ORF1ab/nsp6216F216FttCttT11AY.23.10.000417
ORF1ab/nsp6216F216FttCttT11AY.300.000396
ORF1ab/nsp6216F216FttCttT11AY.4.40.000409
ORF1ab/nsp6216F216FttCttT11AY.46.60.000072
ORF1ab/nsp6216F216FttCttT11AY.600.000938
ORF1ab/nsp6216F216FttCttT11AY.70.000196
ORF1ab/nsp6216F216FttCttT11AY.770.001127
ORF1ab/nsp6216F216FttCttT11AY.780.001541
ORF1ab/nsp6216F216FttCttT11AY.840.000437
ORF1ab/nsp6216F216FttCttT11AY.9.20.000037
ORF1ab/nsp6216F216FttCttT11AY.940.000443
ORF1ab/nsp6216F216FttCttT11B.1.1.1150.008929
ORF1ab/nsp6216F216FttCttT11B.1.1.120.007463
ORF1ab/nsp6216F216FttCttT11B.1.1.1890.001513
ORF1ab/nsp6216F216FttCttT11B.1.1.2050.003717
ORF1ab/nsp6216F216FttCttT11B.1.1.2320.001815
ORF1ab/nsp6216F216FttCttT11B.1.1.2510.007937
ORF1ab/nsp6216F216FttCttT11B.1.1.2630.001558
ORF1ab/nsp6216F216FttCttT11B.1.1.2800.003086
ORF1ab/nsp6216F216FttCttT11B.1.1.2970.002237
ORF1ab/nsp6216F216FttCttT11B.1.1.3170.000412
ORF1ab/nsp6216F216FttCttT11B.1.1.3260.001761
ORF1ab/nsp6216F216FttCttT11B.1.1.4110.014706
ORF1ab/nsp6216F216FttCttT11B.1.1.4320.001266
ORF1ab/nsp6216F216FttCttT11B.1.1.500.000679
ORF1ab/nsp6216F216FttCttT11B.1.1.5230.001563
ORF1ab/nsp6216F216FttCttT11B.1.1.610.008772
ORF1ab/nsp6216F216FttCttT11B.1.1.630.000386
ORF1ab/nsp6216F216FttCttT11B.1.1.700.000341
ORF1ab/nsp6216F216FttCttT11B.1.1110.001175
ORF1ab/nsp6216F216FttCttT11B.1.1130.015625
ORF1ab/nsp6216F216FttCttT11B.1.1570.002985
ORF1ab/nsp6216F216FttCttT11B.1.160.330.004425
ORF1ab/nsp6216F216FttCttT11B.1.160.80.001289
ORF1ab/nsp6216F216FttCttT11B.1.177.160.000664
ORF1ab/nsp6216F216FttCttT11B.1.177.210.000076
ORF1ab/nsp6216F216FttCttT11B.1.177.320.00135
ORF1ab/nsp6216F216FttCttT11B.1.177.330.001645
ORF1ab/nsp6216F216FttCttT11B.1.177.350.000691
ORF1ab/nsp6216F216FttCttT11B.1.177.430.001477
ORF1ab/nsp6216F216FttCttT11B.1.177.590.016129
ORF1ab/nsp6216F216FttCttT11B.1.177.600.000218
ORF1ab/nsp6216F216FttCttT11B.1.177.730.000566
ORF1ab/nsp6216F216FttCttT11B.1.177.750.001041
ORF1ab/nsp6216F216FttCttT11B.1.2410.000812
ORF1ab/nsp6216F216FttCttT11B.1.2470.014925
ORF1ab/nsp6216F216FttCttT11B.1.258.110.000396
ORF1ab/nsp6216F216FttCttT11B.1.2790.000514
ORF1ab/nsp6216F216FttCttT11B.1.3460.001311
ORF1ab/nsp6216F216FttCttT11B.1.36.220.001208
ORF1ab/nsp6216F216FttCttT11B.1.36.310.001751
ORF1ab/nsp6216F216FttCttT11B.1.36.70.004
ORF1ab/nsp6216F216FttCttT11B.1.3620.001541
ORF1ab/nsp6216F216FttCttT11B.1.3670.000792
ORF1ab/nsp6216F216FttCttT11B.1.3690.000285
ORF1ab/nsp6216F216FttCttT11B.1.3800.006623
ORF1ab/nsp6216F216FttCttT11B.1.3890.001002
ORF1ab/nsp6216F216FttCttT11B.1.3980.002976
ORF1ab/nsp6216F216FttCttT11B.1.4110.003704
ORF1ab/nsp6216F216FttCttT11B.1.4260.001009
ORF1ab/nsp6216F216FttCttT11B.1.4280.00102
ORF1ab/nsp6216F216FttCttT11B.1.4380.006536
ORF1ab/nsp6216F216FttCttT11B.1.4530.003236
ORF1ab/nsp6216F216FttCttT11B.1.4560.003268
ORF1ab/nsp6216F216FttCttT11B.1.4680.005714
ORF1ab/nsp6216F216FttCttT11B.1.4990.00105
ORF1ab/nsp6216F216FttCttT11B.1.5360.02381
ORF1ab/nsp6216F216FttCttT11B.1.5610.000397
ORF1ab/nsp6216F216FttCttT11B.1.5710.009709
ORF1ab/nsp6216F216FttCttT11B.1.5750.000303
ORF1ab/nsp6216F216FttCttT11B.1.5820.000491
ORF1ab/nsp6216F216FttCttT11B.1.6250.002353
ORF1ab/nsp6216F216FttCttT11B.1.6270.00202
ORF1ab/nsp6216F216FttCttT11B.1.6280.000352
ORF1ab/nsp6216F216FttCttT11B.400.000364
ORF1ab/nsp6216F216FttCttT11B.530.011765
ORF1ab/nsp6216F216FttCttT11C.1.20.004255
ORF1ab/nsp6216F216FttCttT11C.160.00106
ORF1ab/nsp6216F216FttCttT11C.290.0625
ORF1ab/nsp6216F216FttCttT11P.1.70.000319
ORF1ab/nsp6216F216FttCttT11P.40.003802

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.