CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 208 & Codon = caT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6208Q208HQ3777HnonsyncaGcaT472647040.99534511594-11596

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6208Q208HcaGcaT47044726All0.0009
ORF1ab/nsp6208Q208HcaGcaT12871287AY.290.020301
ORF1ab/nsp6208Q208HcaGcaT855855B.1.360.124745
ORF1ab/nsp6208Q208HcaGcaT209209P.70.912664
ORF1ab/nsp6208Q208HcaGcaT191196AY.40.000297
ORF1ab/nsp6208Q208HcaGcaT183184B.1.1.70.000164
ORF1ab/nsp6208Q208HcaGcaT163165AY.250.00098
ORF1ab/nsp6208Q208HcaGcaT165165B.1.1.3760.982143
ORF1ab/nsp6208Q208HcaGcaT145145B.1.617.20.000546
ORF1ab/nsp6208Q208HcaGcaT133133AY.70.026068
ORF1ab/nsp6208Q208HcaGcaT105105AY.1030.000652
ORF1ab/nsp6208Q208HcaGcaT103103AY.1000.004739
ORF1ab/nsp6208Q208HcaGcaT8282B.1.4560.267974
ORF1ab/nsp6208Q208HcaGcaT7979AY.440.000481
ORF1ab/nsp6208Q208HcaGcaT7272B.10.000659
ORF1ab/nsp6208Q208HcaGcaT6565R.10.005851
ORF1ab/nsp6208Q208HcaGcaT5353B.1.961
ORF1ab/nsp6208Q208HcaGcaT4949B.1.110.30.035201
ORF1ab/nsp6208Q208HcaGcaT4848AY.430.000213
ORF1ab/nsp6208Q208HcaGcaT4444B.1.36.290.022763
ORF1ab/nsp6208Q208HcaGcaT4243B.1.20.00037
ORF1ab/nsp6208Q208HcaGcaT3737AY.390.000914
ORF1ab/nsp6208Q208HcaGcaT3535AY.98.10.001695
ORF1ab/nsp6208Q208HcaGcaT3131P.10.000488
ORF1ab/nsp6208Q208HcaGcaT2828B.1.5260.000658
ORF1ab/nsp6208Q208HcaGcaT2626AY.840.011374
ORF1ab/nsp6208Q208HcaGcaT2626B.1.1770.000342
ORF1ab/nsp6208Q208HcaGcaT1919B.1.1.330.007997
ORF1ab/nsp6208Q208HcaGcaT1919B.1.466.10.136691
ORF1ab/nsp6208Q208HcaGcaT1818AY.230.001255
ORF1ab/nsp6208Q208HcaGcaT1818AY.30.000179
ORF1ab/nsp6208Q208HcaGcaT1717B.1.1.5190.000675
ORF1ab/nsp6208Q208HcaGcaT1515B.1.36.170.007411
ORF1ab/nsp6208Q208HcaGcaT1212AY.1020.000318
ORF1ab/nsp6208Q208HcaGcaT1212AY.920.003447
ORF1ab/nsp6208Q208HcaGcaT1111B.1.10.0002
ORF1ab/nsp6208Q208HcaGcaT1111B.1.1.280.003424
ORF1ab/nsp6208Q208HcaGcaT610AY.46.60.000433
ORF1ab/nsp6208Q208HcaGcaT1010B.1.4290.000235
ORF1ab/nsp6208Q208HcaGcaT89AY.260.000226
ORF1ab/nsp6208Q208HcaGcaT99AY.4.20.000195
ORF1ab/nsp6208Q208HcaGcaT99B.1.438.10.000965
ORF1ab/nsp6208Q208HcaGcaT88AY.29.10.001764
ORF1ab/nsp6208Q208HcaGcaT88B.1.1.700.002729
ORF1ab/nsp6208Q208HcaGcaT77AY.9.20.000257
ORF1ab/nsp6208Q208HcaGcaT77B.1.2800.05
ORF1ab/nsp6208Q208HcaGcaT66AY.1210.000812
ORF1ab/nsp6208Q208HcaGcaT66B.1.1.500.004073
ORF1ab/nsp6208Q208HcaGcaT66B.1.177.810.001136
ORF1ab/nsp6208Q208HcaGcaT66B.1.3510.000178
ORF1ab/nsp6208Q208HcaGcaT66B.1.4990.006303
ORF1ab/nsp6208Q208HcaGcaT55AY.1060.001674
ORF1ab/nsp6208Q208HcaGcaT55AY.1180.000313
ORF1ab/nsp6208Q208HcaGcaT55AY.5.40.001384
ORF1ab/nsp6208Q208HcaGcaT55B.1.2430.000348
ORF1ab/nsp6208Q208HcaGcaT55B.1.3960.003529
ORF1ab/nsp6208Q208HcaGcaT55B.1.6090.002397
ORF1ab/nsp6208Q208HcaGcaT55P.50.068493
ORF1ab/nsp6208Q208HcaGcaT44A.2.40.013468
ORF1ab/nsp6208Q208HcaGcaT44AY.1160.001147
ORF1ab/nsp6208Q208HcaGcaT44B.1.1.2160.003562
ORF1ab/nsp6208Q208HcaGcaT44B.1.3950.028169
ORF1ab/nsp6208Q208HcaGcaT14B.1.5960.000087
ORF1ab/nsp6208Q208HcaGcaT44D.20.0003
ORF1ab/nsp6208Q208HcaGcaT44P.1.10.001271
ORF1ab/nsp6208Q208HcaGcaT33AY.1050.001929
ORF1ab/nsp6208Q208HcaGcaT33AY.1190.000106
ORF1ab/nsp6208Q208HcaGcaT33AY.39.10.000119
ORF1ab/nsp6208Q208HcaGcaT33AY.540.000286
ORF1ab/nsp6208Q208HcaGcaT33AY.60.000123
ORF1ab/nsp6208Q208HcaGcaT33AY.610.000314
ORF1ab/nsp6208Q208HcaGcaT33AY.750.000168
ORF1ab/nsp6208Q208HcaGcaT33B.1.1.460.0131
ORF1ab/nsp6208Q208HcaGcaT33B.1.3110.000824
ORF1ab/nsp6208Q208HcaGcaT33B.1.36.80.003
ORF1ab/nsp6208Q208HcaGcaT22AY.1110.000366
ORF1ab/nsp6208Q208HcaGcaT22AY.1170.000169
ORF1ab/nsp6208Q208HcaGcaT22AY.200.000078
ORF1ab/nsp6208Q208HcaGcaT22AY.270.000129
ORF1ab/nsp6208Q208HcaGcaT22AY.330.000134
ORF1ab/nsp6208Q208HcaGcaT22AY.340.000194
ORF1ab/nsp6208Q208HcaGcaT22AY.360.000296
ORF1ab/nsp6208Q208HcaGcaT22AY.420.00008
ORF1ab/nsp6208Q208HcaGcaT12AY.460.000104
ORF1ab/nsp6208Q208HcaGcaT22AY.470.000062
ORF1ab/nsp6208Q208HcaGcaT22AY.50.000041
ORF1ab/nsp6208Q208HcaGcaT22AY.9.10.000167
ORF1ab/nsp6208Q208HcaGcaT22AY.980.000158
ORF1ab/nsp6208Q208HcaGcaT22B.1.1.10.000653
ORF1ab/nsp6208Q208HcaGcaT22B.1.1.2280.006098
ORF1ab/nsp6208Q208HcaGcaT22B.1.1.3110.000716
ORF1ab/nsp6208Q208HcaGcaT22B.1.1.3180.000604
ORF1ab/nsp6208Q208HcaGcaT22B.1.1.610.017544
ORF1ab/nsp6208Q208HcaGcaT22B.1.177.860.000367
ORF1ab/nsp6208Q208HcaGcaT22B.1.2390.002442
ORF1ab/nsp6208Q208HcaGcaT22B.1.3690.00057
ORF1ab/nsp6208Q208HcaGcaT22B.1.4270.000101
ORF1ab/nsp6208Q208HcaGcaT22B.1.466.20.000782
ORF1ab/nsp6208Q208HcaGcaT22B.1.5950.000522
ORF1ab/nsp6208Q208HcaGcaT22P.40.007605
ORF1ab/nsp6208Q208HcaGcaT110.055556
ORF1ab/nsp6208Q208HcaGcaT11AE.80.000489
ORF1ab/nsp6208Q208HcaGcaT11AY.1130.000142
ORF1ab/nsp6208Q208HcaGcaT11AY.120.000316
ORF1ab/nsp6208Q208HcaGcaT11AY.120.2.10.000498
ORF1ab/nsp6208Q208HcaGcaT11AY.130.000161
ORF1ab/nsp6208Q208HcaGcaT11AY.3.10.000085
ORF1ab/nsp6208Q208HcaGcaT11AY.34.10.00051
ORF1ab/nsp6208Q208HcaGcaT11AY.400.000964
ORF1ab/nsp6208Q208HcaGcaT11AY.46.40.000165
ORF1ab/nsp6208Q208HcaGcaT11AY.5.30.000337
ORF1ab/nsp6208Q208HcaGcaT11AY.670.000464
ORF1ab/nsp6208Q208HcaGcaT11AY.680.000274
ORF1ab/nsp6208Q208HcaGcaT11AY.690.000187
ORF1ab/nsp6208Q208HcaGcaT11AY.7.10.000113
ORF1ab/nsp6208Q208HcaGcaT11AY.75.10.00018
ORF1ab/nsp6208Q208HcaGcaT11AY.90.000068
ORF1ab/nsp6208Q208HcaGcaT11AY.99.20.000092
ORF1ab/nsp6208Q208HcaGcaT11AZ.30.00152
ORF1ab/nsp6208Q208HcaGcaT11B0.000128
ORF1ab/nsp6208Q208HcaGcaT11B.1.1.1940.00495
ORF1ab/nsp6208Q208HcaGcaT11B.1.1.2200.001859
ORF1ab/nsp6208Q208HcaGcaT11B.1.1.2220.000204
ORF1ab/nsp6208Q208HcaGcaT11B.1.1.2960.018182
ORF1ab/nsp6208Q208HcaGcaT11B.1.1.3720.000689
ORF1ab/nsp6208Q208HcaGcaT11B.1.1.4320.001266
ORF1ab/nsp6208Q208HcaGcaT11B.1.1.590.006494
ORF1ab/nsp6208Q208HcaGcaT11B.1.1.630.000386
ORF1ab/nsp6208Q208HcaGcaT11B.1.1.830.00271
ORF1ab/nsp6208Q208HcaGcaT11B.1.1120.005181
ORF1ab/nsp6208Q208HcaGcaT11B.1.1390.000733
ORF1ab/nsp6208Q208HcaGcaT11B.1.1470.000756
ORF1ab/nsp6208Q208HcaGcaT11B.1.1600.000031
ORF1ab/nsp6208Q208HcaGcaT11B.1.1690.014925
ORF1ab/nsp6208Q208HcaGcaT11B.1.177.40.000211
ORF1ab/nsp6208Q208HcaGcaT11B.1.177.580.001332
ORF1ab/nsp6208Q208HcaGcaT11B.1.177.600.000218
ORF1ab/nsp6208Q208HcaGcaT11B.1.177.70.000165
ORF1ab/nsp6208Q208HcaGcaT11B.1.177.820.000477
ORF1ab/nsp6208Q208HcaGcaT11B.1.1900.01
ORF1ab/nsp6208Q208HcaGcaT11B.1.2360.002053
ORF1ab/nsp6208Q208HcaGcaT11B.1.3290.000608
ORF1ab/nsp6208Q208HcaGcaT11B.1.3360.002439
ORF1ab/nsp6208Q208HcaGcaT11B.1.36.180.00042
ORF1ab/nsp6208Q208HcaGcaT11B.1.3820.008929
ORF1ab/nsp6208Q208HcaGcaT11B.1.4000.000429
ORF1ab/nsp6208Q208HcaGcaT11B.1.4680.005714
ORF1ab/nsp6208Q208HcaGcaT11B.1.5640.000426
ORF1ab/nsp6208Q208HcaGcaT11B.1.575.10.002439
ORF1ab/nsp6208Q208HcaGcaT11B.1.5760.000907
ORF1ab/nsp6208Q208HcaGcaT11B.1.5820.000491
ORF1ab/nsp6208Q208HcaGcaT11B.1.619.10.000641
ORF1ab/nsp6208Q208HcaGcaT11B.1.6210.000089
ORF1ab/nsp6208Q208HcaGcaT11C.370.000116
ORF1ab/nsp6208Q208HcaGcaT11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.