CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 208

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp6	208	Q208R	Q3777R	nonsyn	cAg	cGg	10041	10029	0.998805	11594-11596
ORF1ab/nsp6	208	Q208R	Q3777R	nonsyn	cAG	cGT	10041	12	0.0011951	11594-11596
ORF1ab/nsp6	208	Q208H	Q3777H	nonsyn	caG	caT	4726	4704	0.995345	11594-11596
ORF1ab/nsp6	208	Q208H	Q3777H	nonsyn	caG	caC	4726	22	0.0046551	11594-11596
ORF1ab/nsp6	208	Q208Q	Q3777Q	syn	caG	caA	53	53	1	11594-11596
ORF1ab/nsp6	208	Q208del	Q3777del	del	CAG	---	46	46	1	11594-11596
ORF1ab/nsp6	208	Q208X	Q3777X	nonsyn	Cag	Tag	30	29	0.966667	11594-11596
ORF1ab/nsp6	208	Q208X	Q3777X	nonsyn	CAG	TGA	30	1	0.0333333	11594-11596
ORF1ab/nsp6	208	Q208K	Q3777K	nonsyn	Cag	Aag	22	19	0.863636	11594-11596
ORF1ab/nsp6	208	Q208K	Q3777K	nonsyn	CaG	AaA	22	3	0.136364	11594-11596
ORF1ab/nsp6	208	Q208E	Q3777E	nonsyn	Cag	Gag	21	21	1	11594-11596
ORF1ab/nsp6	208	Q208P	Q3777P	nonsyn	cAg	cCg	20	20	1	11594-11596
ORF1ab/nsp6	208	Q208del1	Q3777del1	del	Cag	-ag	7	3	0.428571	11594-11596
ORF1ab/nsp6	208	Q208del1	Q3777del1	del	cAg	c-g	7	2	0.285714	11594-11596
ORF1ab/nsp6	208	Q208del1	Q3777del1	del	caG	ca-	7	2	0.285714	11594-11596
ORF1ab/nsp6	208	Q208L	Q3777L	nonsyn	cAg	cTg	5	5	1	11594-11596
ORF1ab/nsp6	208	Q208del2	Q3777del2	del	cAG	c--	1	1	1	11594-11596
ORF1ab/nsp6	208	Q208Y	Q3777Y	nonsyn	CaG	TaT	1	1	1	11594-11596
ORF1ab/nsp6	208	Q208T	Q3777T	nonsyn	CAG	ACA	1	1	1	11594-11596
ORF1ab/nsp6	208	Q208N	Q3777N	nonsyn	CaG	AaT	1	1	1	11594-11596
ORF1ab/nsp6	208	Q208D	Q3777D	nonsyn	CaG	GaT	1	1	1	11594-11596

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp6	208	Q208R	cAg	cGg	10029	10041	All	0.001918
ORF1ab/nsp6	208	Q208R	cAG	cGT	12	10041	All	0.000002
ORF1ab/nsp6	208	Q208H	caG	caT	4704	4726	All	0.0009
ORF1ab/nsp6	208	Q208H	caG	caC	22	4726	All	0.000004
ORF1ab/nsp6	208	Q208R	cAg	cGg	3163	3163	B.1.177.21	0.241875
ORF1ab/nsp6	208	Q208R	cAg	cGg	1310	1310	AY.109	0.968935
ORF1ab/nsp6	208	Q208R	cAg	cGg	1297	1297	AY.3	0.0129
ORF1ab/nsp6	208	Q208H	caG	caT	1287	1287	AY.29	0.020301
ORF1ab/nsp6	208	Q208R	cAg	cGg	1035	1035	AY.4	0.001611
ORF1ab/nsp6	208	Q208H	caG	caT	855	855	B.1.36	0.124745
ORF1ab/nsp6	208	Q208R	cAg	cGg	401	413	AY.44	0.002441
ORF1ab/nsp6	208	Q208R	cAG	cGT	12	413	AY.44	0.000073
ORF1ab/nsp6	208	Q208R	cAg	cGg	352	352	AY.25	0.002117
ORF1ab/nsp6	208	Q208R	cAg	cGg	244	244	AY.102	0.006469
ORF1ab/nsp6	208	Q208R	cAg	cGg	240	240	B.1.617.2	0.000904
ORF1ab/nsp6	208	Q208H	caG	caT	209	209	P.7	0.912664
ORF1ab/nsp6	208	Q208H	caG	caT	191	196	AY.4	0.000297
ORF1ab/nsp6	208	Q208H	caG	caC	5	196	AY.4	0.000008
ORF1ab/nsp6	208	Q208H	caG	caT	183	184	B.1.1.7	0.000164
ORF1ab/nsp6	208	Q208H	caG	caC	1	184	B.1.1.7	0.000001
ORF1ab/nsp6	208	Q208H	caG	caT	163	165	AY.25	0.00098
ORF1ab/nsp6	208	Q208H	caG	caC	2	165	AY.25	0.000012
ORF1ab/nsp6	208	Q208H	caG	caT	165	165	B.1.1.376	0.982143
ORF1ab/nsp6	208	Q208R	cAg	cGg	152	152	AY.5	0.003139
ORF1ab/nsp6	208	Q208H	caG	caT	145	145	B.1.617.2	0.000546
ORF1ab/nsp6	208	Q208R	cAg	cGg	135	135	B.1.1.7	0.000121
ORF1ab/nsp6	208	Q208H	caG	caT	133	133	AY.7	0.026068
ORF1ab/nsp6	208	Q208R	cAg	cGg	132	132	B.1.36.29	0.068288
ORF1ab/nsp6	208	Q208R	cAg	cGg	124	124	B.1.2	0.001092
ORF1ab/nsp6	208	Q208R	cAg	cGg	112	112	AY.118	0.007017
ORF1ab/nsp6	208	Q208H	caG	caT	105	105	AY.103	0.000652
ORF1ab/nsp6	208	Q208H	caG	caT	103	103	AY.100	0.004739
ORF1ab/nsp6	208	Q208R	cAg	cGg	100	100	B.1.438.1	0.010726
ORF1ab/nsp6	208	Q208R	cAg	cGg	83	83	B.1.36	0.01211
ORF1ab/nsp6	208	Q208H	caG	caT	82	82	B.1.456	0.267974
ORF1ab/nsp6	208	Q208R	cAg	cGg	80	80	AY.39	0.001977
ORF1ab/nsp6	208	Q208H	caG	caT	79	79	AY.44	0.000481
ORF1ab/nsp6	208	Q208R	cAg	cGg	78	78	B.1	0.000714
ORF1ab/nsp6	208	Q208H	caG	caT	72	72	B.1	0.000659
ORF1ab/nsp6	208	Q208R	cAg	cGg	69	69	B.1.243.2	1
ORF1ab/nsp6	208	Q208H	caG	caT	65	65	R.1	0.005851
ORF1ab/nsp6	208	Q208R	cAg	cGg	57	57	AY.43	0.000253
ORF1ab/nsp6	208	Q208Q	caG	caA	53	53	All	0.00001
ORF1ab/nsp6	208	Q208H	caG	caT	53	53	B.1.96	1
ORF1ab/nsp6	208	Q208R	cAg	cGg	50	50	AY.33	0.003339
ORF1ab/nsp6	208	Q208H	caG	caT	49	49	B.1.110.3	0.035201
ORF1ab/nsp6	208	Q208H	caG	caT	48	48	AY.43	0.000213
ORF1ab/nsp6	208	Q208del	CAG	---	46	46	All	0.000009
ORF1ab/nsp6	208	Q208H	caG	caT	44	44	B.1.36.29	0.022763
ORF1ab/nsp6	208	Q208H	caG	caT	42	43	B.1.2	0.00037
ORF1ab/nsp6	208	Q208H	caG	caC	1	43	B.1.2	0.000009
ORF1ab/nsp6	208	Q208R	cAg	cGg	42	42	AY.103	0.000261
ORF1ab/nsp6	208	Q208R	cAg	cGg	39	39	AY.9.2	0.001432
ORF1ab/nsp6	208	Q208H	caG	caT	37	37	AY.39	0.000914
ORF1ab/nsp6	208	Q208R	cAg	cGg	37	37	B.1.1	0.000671
ORF1ab/nsp6	208	Q208H	caG	caT	35	35	AY.98.1	0.001695
ORF1ab/nsp6	208	Q208R	cAg	cGg	32	32	B.1.334	0.581818
ORF1ab/nsp6	208	Q208H	caG	caT	31	31	P.1	0.000488
ORF1ab/nsp6	208	Q208X	Cag	Tag	29	30	All	0.000006
ORF1ab/nsp6	208	Q208X	CAG	TGA	1	30	All	0
ORF1ab/nsp6	208	Q208R	cAg	cGg	30	30	B.1.177	0.000395
ORF1ab/nsp6	208	Q208R	cAg	cGg	28	28	AY.119	0.000989
ORF1ab/nsp6	208	Q208H	caG	caT	28	28	B.1.526	0.000658
ORF1ab/nsp6	208	Q208H	caG	caT	26	26	AY.84	0.011374
ORF1ab/nsp6	208	Q208H	caG	caT	26	26	B.1.177	0.000342
ORF1ab/nsp6	208	Q208R	cAg	cGg	24	24	AY.4.2	0.000521
ORF1ab/nsp6	208	Q208K	Cag	Aag	19	22	All	0.000004
ORF1ab/nsp6	208	Q208K	CaG	AaA	3	22	All	0.000001
ORF1ab/nsp6	208	Q208E	Cag	Gag	21	21	All	0.000004
ORF1ab/nsp6	208	Q208P	cAg	cCg	20	20	All	0.000004
ORF1ab/nsp6	208	Q208Q	caG	caA	19	19	AY.4	0.00003
ORF1ab/nsp6	208	Q208H	caG	caT	19	19	B.1.1.33	0.007997
ORF1ab/nsp6	208	Q208H	caG	caT	19	19	B.1.466.1	0.136691
ORF1ab/nsp6	208	Q208H	caG	caT	18	18	AY.23	0.001255
ORF1ab/nsp6	208	Q208H	caG	caT	18	18	AY.3	0.000179
ORF1ab/nsp6	208	Q208R	cAg	cGg	18	18	AY.46	0.001873
ORF1ab/nsp6	208	Q208R	cAg	cGg	18	18	B.1.221	0.001279
ORF1ab/nsp6	208	Q208H	caG	caT	17	17	B.1.1.519	0.000675
ORF1ab/nsp6	208	Q208R	cAg	cGg	16	16	AY.121	0.002165
ORF1ab/nsp6	208	Q208R	cAg	cGg	15	15	AY.4.4	0.006137
ORF1ab/nsp6	208	Q208R	cAg	cGg	15	15	B.1.240	0.003233
ORF1ab/nsp6	208	Q208H	caG	caT	15	15	B.1.36.17	0.007411
ORF1ab/nsp6	208	Q208E	Cag	Gag	14	14	AY.4	0.000022
ORF1ab/nsp6	208	Q208del	CAG	---	14	14	B.1.1.7	0.000013
ORF1ab/nsp6	208	Q208H	caG	caT	12	12	AY.102	0.000318
ORF1ab/nsp6	208	Q208R	cAg	cGg	12	12	AY.88	0.01061
ORF1ab/nsp6	208	Q208H	caG	caT	12	12	AY.92	0.003447
ORF1ab/nsp6	208	Q208R	cAg	cGg	12	12	AY.99.2	0.001106
ORF1ab/nsp6	208	Q208R	cAg	cGg	12	12	B.1.429	0.000282
ORF1ab/nsp6	208	Q208R	cAg	cGg	11	11	AY.29	0.000174
ORF1ab/nsp6	208	Q208H	caG	caT	11	11	B.1.1	0.0002
ORF1ab/nsp6	208	Q208H	caG	caT	11	11	B.1.1.28	0.003424
ORF1ab/nsp6	208	Q208R	cAg	cGg	11	11	B.1.177.54	0.006671
ORF1ab/nsp6	208	Q208R	cAg	cGg	10	10	AY.3.1	0.000853
ORF1ab/nsp6	208	Q208H	caG	caT	6	10	AY.46.6	0.000433
ORF1ab/nsp6	208	Q208H	caG	caC	4	10	AY.46.6	0.000289
ORF1ab/nsp6	208	Q208R	cAg	cGg	10	10	AY.92	0.002873
ORF1ab/nsp6	208	Q208R	cAg	cGg	10	10	AY.95	0.00761
ORF1ab/nsp6	208	Q208R	cAg	cGg	10	10	B	0.001278
ORF1ab/nsp6	208	Q208R	cAg	cGg	10	10	B.1.1.222	0.00204
ORF1ab/nsp6	208	Q208H	caG	caT	10	10	B.1.429	0.000235
ORF1ab/nsp6	208	Q208H	caG	caT	8	9	AY.26	0.000226
ORF1ab/nsp6	208	Q208H	caG	caC	1	9	AY.26	0.000028
ORF1ab/nsp6	208	Q208Q	caG	caA	9	9	AY.3.1	0.000767
ORF1ab/nsp6	208	Q208H	caG	caT	9	9	AY.4.2	0.000195
ORF1ab/nsp6	208	Q208R	cAg	cGg	9	9	B.1.177.5	0.01118
ORF1ab/nsp6	208	Q208H	caG	caT	9	9	B.1.438.1	0.000965
ORF1ab/nsp6	208	Q208R	cAg	cGg	8	8	AY.111	0.001465
ORF1ab/nsp6	208	Q208H	caG	caT	8	8	AY.29.1	0.001764
ORF1ab/nsp6	208	Q208R	cAg	cGg	8	8	AY.46.6	0.000578
ORF1ab/nsp6	208	Q208H	caG	caT	8	8	B.1.1.70	0.002729
ORF1ab/nsp6	208	Q208del1	Cag	-ag	3	7	All	0.000001
ORF1ab/nsp6	208	Q208del1	caG	ca-	2	7	All	0
ORF1ab/nsp6	208	Q208del1	cAg	c-g	2	7	All	0
ORF1ab/nsp6	208	Q208R	cAg	cGg	7	7	AY.100	0.000322
ORF1ab/nsp6	208	Q208R	cAg	cGg	7	7	AY.120	0.00026
ORF1ab/nsp6	208	Q208R	cAg	cGg	7	7	AY.45	0.000852
ORF1ab/nsp6	208	Q208R	cAg	cGg	7	7	AY.7.1	0.000789
ORF1ab/nsp6	208	Q208H	caG	caT	7	7	AY.9.2	0.000257
ORF1ab/nsp6	208	Q208R	cAg	cGg	7	7	AY.91	0.005113
ORF1ab/nsp6	208	Q208R	cAg	cGg	7	7	AY.98.1	0.000339
ORF1ab/nsp6	208	Q208R	cAg	cGg	7	7	B.1.160	0.000218
ORF1ab/nsp6	208	Q208R	cAg	cGg	7	7	B.1.177.87	0.005095
ORF1ab/nsp6	208	Q208R	cAg	cGg	7	7	B.1.258	0.000466
ORF1ab/nsp6	208	Q208H	caG	caT	7	7	B.1.280	0.05
ORF1ab/nsp6	208	Q208R	cAg	cGg	7	7	B.1.526	0.000165
ORF1ab/nsp6	208	Q208H	caG	caT	6	6	AY.121	0.000812
ORF1ab/nsp6	208	Q208R	cAg	cGg	6	6	AY.23	0.000418
ORF1ab/nsp6	208	Q208P	cAg	cCg	6	6	AY.3.1	0.000512
ORF1ab/nsp6	208	Q208R	cAg	cGg	6	6	AY.36	0.000889
ORF1ab/nsp6	208	Q208R	cAg	cGg	6	6	AY.69	0.00112
ORF1ab/nsp6	208	Q208H	caG	caT	6	6	B.1.1.50	0.004073
ORF1ab/nsp6	208	Q208H	caG	caT	6	6	B.1.177.81	0.001136
ORF1ab/nsp6	208	Q208H	caG	caT	6	6	B.1.351	0.000178
ORF1ab/nsp6	208	Q208H	caG	caT	6	6	B.1.499	0.006303
ORF1ab/nsp6	208	Q208R	cAg	cGg	6	6	B.1.582	0.002944
ORF1ab/nsp6	208	Q208L	cAg	cTg	5	5	All	0.000001
ORF1ab/nsp6	208	Q208H	caG	caT	5	5	AY.106	0.001674
ORF1ab/nsp6	208	Q208H	caG	caT	5	5	AY.118	0.000313
ORF1ab/nsp6	208	Q208R	cAg	cGg	5	5	AY.26	0.000142
ORF1ab/nsp6	208	Q208R	cAg	cGg	5	5	AY.41	0.00147
ORF1ab/nsp6	208	Q208H	caG	caT	5	5	AY.5.4	0.001384
ORF1ab/nsp6	208	Q208R	cAg	cGg	5	5	AY.64	0.002976
ORF1ab/nsp6	208	Q208R	cAg	cGg	5	5	AY.84	0.002187
ORF1ab/nsp6	208	Q208R	cAg	cGg	5	5	AY.98	0.000395
ORF1ab/nsp6	208	Q208X	Cag	Tag	5	5	B.1	0.000046
ORF1ab/nsp6	208	Q208del	CAG	---	5	5	B.1	0.000046
ORF1ab/nsp6	208	Q208R	cAg	cGg	5	5	B.1.177.86	0.000917
ORF1ab/nsp6	208	Q208H	caG	caT	5	5	B.1.243	0.000348
ORF1ab/nsp6	208	Q208H	caG	caT	5	5	B.1.396	0.003529
ORF1ab/nsp6	208	Q208K	Cag	Aag	4	5	B.1.525	0.000453
ORF1ab/nsp6	208	Q208K	CaG	AaA	1	5	B.1.525	0.000113
ORF1ab/nsp6	208	Q208H	caG	caT	5	5	B.1.609	0.002397
ORF1ab/nsp6	208	Q208del	CAG	---	5	5	B.1.617.2	0.000019
ORF1ab/nsp6	208	Q208H	caG	caT	5	5	P.5	0.068493
ORF1ab/nsp6	208	Q208R	cAg	cGg	5	5	R.1	0.00045
ORF1ab/nsp6	208	Q208H	caG	caT	4	4	A.2.4	0.013468
ORF1ab/nsp6	208	Q208R	cAg	cGg	4	4	AY.105	0.002572
ORF1ab/nsp6	208	Q208H	caG	caT	4	4	AY.116	0.001147
ORF1ab/nsp6	208	Q208P	cAg	cCg	4	4	AY.20	0.000155
ORF1ab/nsp6	208	Q208R	cAg	cGg	4	4	AY.4.5	0.00043
ORF1ab/nsp6	208	Q208R	cAg	cGg	4	4	AY.42	0.000161
ORF1ab/nsp6	208	Q208R	cAg	cGg	4	4	AY.5.3	0.00135
ORF1ab/nsp6	208	Q208R	cAg	cGg	4	4	AY.6	0.000165
ORF1ab/nsp6	208	Q208H	caG	caT	4	4	B.1.1.216	0.003562
ORF1ab/nsp6	208	Q208H	caG	caC	4	4	B.1.1.280	0.012346
ORF1ab/nsp6	208	Q208R	cAg	cGg	4	4	B.1.1.41	0.025316
ORF1ab/nsp6	208	Q208R	cAg	cGg	4	4	B.1.1.519	0.000159
ORF1ab/nsp6	208	Q208R	cAg	cGg	4	4	B.1.1.63	0.001543
ORF1ab/nsp6	208	Q208R	cAg	cGg	4	4	B.1.177.81	0.000757
ORF1ab/nsp6	208	Q208R	cAg	cGg	4	4	B.1.371	0.004489
ORF1ab/nsp6	208	Q208H	caG	caT	4	4	B.1.395	0.028169
ORF1ab/nsp6	208	Q208R	cAg	cGg	4	4	B.1.400	0.001716
ORF1ab/nsp6	208	Q208H	caG	caC	3	4	B.1.596	0.000261
ORF1ab/nsp6	208	Q208H	caG	caT	1	4	B.1.596	0.000087
ORF1ab/nsp6	208	Q208R	cAg	cGg	4	4	B.1.617.1	0.000516
ORF1ab/nsp6	208	Q208H	caG	caT	4	4	D.2	0.0003
ORF1ab/nsp6	208	Q208H	caG	caT	4	4	P.1.1	0.001271
ORF1ab/nsp6	208	Q208H	caG	caT	3	3	AY.105	0.001929
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	AY.110	0.000338
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	AY.117	0.000254
ORF1ab/nsp6	208	Q208H	caG	caT	3	3	AY.119	0.000106
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	AY.16	0.001139
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	AY.34.1	0.00153
ORF1ab/nsp6	208	Q208H	caG	caT	3	3	AY.39.1	0.000119
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	AY.50	0.002398
ORF1ab/nsp6	208	Q208H	caG	caT	3	3	AY.54	0.000286
ORF1ab/nsp6	208	Q208H	caG	caT	3	3	AY.6	0.000123
ORF1ab/nsp6	208	Q208H	caG	caT	3	3	AY.61	0.000314
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	AY.61	0.000314
ORF1ab/nsp6	208	Q208H	caG	caT	3	3	AY.75	0.000168
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	AY.78	0.004622
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	AY.79	0.003632
ORF1ab/nsp6	208	Q208Q	caG	caA	3	3	B.1.1.222	0.000612
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	B.1.1.348	0.002389
ORF1ab/nsp6	208	Q208H	caG	caT	3	3	B.1.1.46	0.0131
ORF1ab/nsp6	208	Q208X	Cag	Tag	3	3	B.1.1.7	0.000003
ORF1ab/nsp6	208	Q208L	cAg	cTg	3	3	B.1.1.7	0.000003
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	B.1.142	0.008696
ORF1ab/nsp6	208	Q208Q	caG	caA	3	3	B.1.177	0.00004
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	B.1.177.82	0.001432
ORF1ab/nsp6	208	Q208X	Cag	Tag	3	3	B.1.2	0.000026
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	B.1.243	0.000209
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	B.1.260	0.010033
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	B.1.289	0.007979
ORF1ab/nsp6	208	Q208H	caG	caT	3	3	B.1.311	0.000824
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	B.1.351	0.000089
ORF1ab/nsp6	208	Q208H	caG	caT	3	3	B.1.36.8	0.003
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	B.1.456	0.009804
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	B.1.466.2	0.001174
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	B.1.596	0.000261
ORF1ab/nsp6	208	Q208P	cAg	cCg	3	3	B.1.617.2	0.000011
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	B.55	0.00885
ORF1ab/nsp6	208	Q208R	cAg	cGg	3	3	D.2	0.000225
ORF1ab/nsp6	208	Q208Q	caG	caA	2	2		0.111111
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	AA.7	0.018349
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	AY.107	0.000932
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	AY.111	0.000366
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	AY.113	0.000285
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	AY.116	0.000574
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	AY.117	0.000169
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	AY.120.2.1	0.000997
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	AY.20	0.000078
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	AY.20	0.000078
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	AY.27	0.000129
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	AY.27	0.000129
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	AY.33	0.000134
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	AY.34	0.000194
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	AY.36	0.000296
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	AY.39.1	0.000079
ORF1ab/nsp6	208	Q208del	CAG	---	2	2	AY.4.5	0.000215
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	AY.42	0.00008
ORF1ab/nsp6	208	Q208del	CAG	---	2	2	AY.43	0.000009
ORF1ab/nsp6	208	Q208K	Cag	Aag	2	2	AY.44	0.000012
ORF1ab/nsp6	208	Q208X	Cag	Tag	2	2	AY.44	0.000012
ORF1ab/nsp6	208	Q208H	caG	caT	1	2	AY.46	0.000104
ORF1ab/nsp6	208	Q208H	caG	caC	1	2	AY.46	0.000104
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	AY.47	0.000062
ORF1ab/nsp6	208	Q208Q	caG	caA	2	2	AY.5	0.000041
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	AY.5	0.000041
ORF1ab/nsp6	208	Q208del	CAG	---	2	2	AY.65	0.001066
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	AY.77	0.002255
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	AY.9.1	0.000167
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	AY.96	0.004149
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	AY.98	0.000158
ORF1ab/nsp6	208	Q208K	Cag	Aag	2	2	B.1	0.000018
ORF1ab/nsp6	208	Q208del1	Cag	-ag	1	2	B.1	0.000009
ORF1ab/nsp6	208	Q208del1	caG	ca-	1	2	B.1	0.000009
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	B.1.1.1	0.000653
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	B.1.1.216	0.001781
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	B.1.1.228	0.006098
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	B.1.1.294	0.002532
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	B.1.1.311	0.000716
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	B.1.1.318	0.000604
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	B.1.1.432	0.002532
ORF1ab/nsp6	208	Q208Q	caG	caA	2	2	B.1.1.5	0.016667
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	B.1.1.61	0.017544
ORF1ab/nsp6	208	Q208Q	caG	caA	2	2	B.1.1.7	0.000002
ORF1ab/nsp6	208	Q208K	Cag	Aag	1	2	B.1.1.7	0.000001
ORF1ab/nsp6	208	Q208K	CaG	AaA	1	2	B.1.1.7	0.000001
ORF1ab/nsp6	208	Q208del1	Cag	-ag	1	2	B.1.177	0.000013
ORF1ab/nsp6	208	Q208del1	cAg	c-g	1	2	B.1.177	0.000013
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	B.1.177.44	0.001038
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	B.1.177.57	0.000562
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	B.1.177.86	0.000367
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	B.1.239	0.002442
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	B.1.349	0.00143
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	B.1.36.10	0.009569
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	B.1.36.19	0.018519
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	B.1.36.8	0.002
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	B.1.369	0.00057
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	B.1.427	0.000101
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	B.1.466.2	0.000782
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	B.1.551	0.002581
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	B.1.567	0.006667
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	B.1.595	0.000522
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	B.1.595	0.000522
ORF1ab/nsp6	208	Q208Q	caG	caA	2	2	B.1.617.2	0.000008
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	B.3	0.001661
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	C.31	0.035714
ORF1ab/nsp6	208	Q208R	cAg	cGg	2	2	C.32	0.046512
ORF1ab/nsp6	208	Q208H	caG	caT	2	2	P.4	0.007605
ORF1ab/nsp6	208	Q208P	cAg	cCg	1	1		0.055556
ORF1ab/nsp6	208	Q208K	Cag	Aag	1	1		0.055556
ORF1ab/nsp6	208	Q208N	CaG	AaT	1	1		0.055556
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1		0.055556
ORF1ab/nsp6	208	Q208H	caG	caT	1	1		0.055556
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	A	0.000387
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	A.1	0.000282
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	A.2.5	0.000499
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AE.8	0.000489
ORF1ab/nsp6	208	Q208Y	CaG	TaT	1	1	All	0
ORF1ab/nsp6	208	Q208T	CAG	ACA	1	1	All	0
ORF1ab/nsp6	208	Q208D	CaG	GaT	1	1	All	0
ORF1ab/nsp6	208	Q208del2	cAG	c--	1	1	All	0
ORF1ab/nsp6	208	Q208N	CaG	AaT	1	1	All	0
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AU.2	0.002421
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AU.3	0.00211
ORF1ab/nsp6	208	Q208Q	caG	caA	1	1	AY.103	0.000006
ORF1ab/nsp6	208	Q208E	Cag	Gag	1	1	AY.105	0.000643
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.113	0.000142
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.116.1	0.000311
ORF1ab/nsp6	208	Q208P	cAg	cCg	1	1	AY.119	0.000035
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	AY.119	0.000035
ORF1ab/nsp6	208	Q208E	Cag	Gag	1	1	AY.119	0.000035
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.12	0.000316
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.120.2.1	0.000498
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.13	0.000161
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.13	0.000161
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.16.1	0.00047
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.19	0.00114
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	AY.23	0.00007
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.24	0.000431
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	AY.25	0.000006
ORF1ab/nsp6	208	Q208P	cAg	cCg	1	1	AY.25	0.000006
ORF1ab/nsp6	208	Q208L	cAg	cTg	1	1	AY.26	0.000028
ORF1ab/nsp6	208	Q208P	cAg	cCg	1	1	AY.28	0.00189
ORF1ab/nsp6	208	Q208Q	caG	caA	1	1	AY.3	0.00001
ORF1ab/nsp6	208	Q208P	cAg	cCg	1	1	AY.3	0.00001
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.3.1	0.000085
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.32	0.000532
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.34.1	0.00051
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	AY.4	0.000002
ORF1ab/nsp6	208	Q208P	cAg	cCg	1	1	AY.4	0.000002
ORF1ab/nsp6	208	Q208K	CaG	AaA	1	1	AY.4	0.000002
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.40	0.000964
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	AY.42	0.00004
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	AY.43	0.000004
ORF1ab/nsp6	208	Q208K	Cag	Aag	1	1	AY.43	0.000004
ORF1ab/nsp6	208	Q208del2	cAG	c--	1	1	AY.43	0.000004
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.46.2	0.000635
ORF1ab/nsp6	208	Q208Q	caG	caA	1	1	AY.46.3	0.000934
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.46.4	0.000165
ORF1ab/nsp6	208	Q208L	cAg	cTg	1	1	AY.5	0.000021
ORF1ab/nsp6	208	Q208E	Cag	Gag	1	1	AY.5	0.000021
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.5.3	0.000337
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	AY.5.4	0.000277
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.5.4	0.000277
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.52	0.000814
ORF1ab/nsp6	208	Q208D	CaG	GaT	1	1	AY.55	0.000917
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	AY.62	0.000436
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	AY.62	0.000436
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.67	0.000464
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.67	0.000464
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.68	0.000274
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.69	0.000187
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.7.1	0.000113
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.72	0.001361
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.74	0.000116
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	AY.75	0.000056
ORF1ab/nsp6	208	Q208Q	caG	caA	1	1	AY.75	0.000056
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.75	0.000056
ORF1ab/nsp6	208	Q208X	CAG	TGA	1	1	AY.75	0.000056
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.75.1	0.00018
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	AY.78	0.001541
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.82	0.001357
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.87	0.000833
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.89	0.004902
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.9	0.000068
ORF1ab/nsp6	208	Q208T	CAG	ACA	1	1	AY.9.2	0.000037
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	AY.90	0.000684
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AY.99.2	0.000092
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	AZ.3	0.00152
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B	0.000128
ORF1ab/nsp6	208	Q208K	Cag	Aag	1	1	B	0.000128
ORF1ab/nsp6	208	Q208Y	CaG	TaT	1	1	B.1	0.000009
ORF1ab/nsp6	208	Q208E	Cag	Gag	1	1	B.1	0.000009
ORF1ab/nsp6	208	Q208Q	caG	caA	1	1	B.1	0.000009
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	B.1.1	0.000018
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.141	0.002012
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.142	0.017544
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.163	0.007634
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.1.194	0.00495
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.214	0.000055
ORF1ab/nsp6	208	Q208Q	caG	caA	1	1	B.1.1.217	0.003636
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.1.220	0.001859
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.1.222	0.000204
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.263	0.001558
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.28	0.000311
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.284	0.000107
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.286	0.002899
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.1.296	0.018182
ORF1ab/nsp6	208	Q208Q	caG	caA	1	1	B.1.1.306	0.000438
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.311	0.000358
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.317	0.000412
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.318	0.000302
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	B.1.1.324	0.052632
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.33	0.000421
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.372	0.000689
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.1.372	0.000689
ORF1ab/nsp6	208	Q208K	Cag	Aag	1	1	B.1.1.372	0.000689
ORF1ab/nsp6	208	Q208del1	cAg	c-g	1	1	B.1.1.402	0.011111
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.409	0.002833
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.416	0.000905
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.1.432	0.001266
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.448	0.002033
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.482	0.023256
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.518	0.006329
ORF1ab/nsp6	208	Q208K	Cag	Aag	1	1	B.1.1.58	0.005376
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.1.59	0.006494
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.1.63	0.000386
ORF1ab/nsp6	208	Q208del1	caG	ca-	1	1	B.1.1.7	0.000001
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.1.70	0.000341
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.1.83	0.00271
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.110.3	0.000718
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.112	0.005181
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.126	0.001276
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.139	0.000733
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.147	0.000756
ORF1ab/nsp6	208	Q208K	Cag	Aag	1	1	B.1.157	0.002985
ORF1ab/nsp6	208	Q208K	Cag	Aag	1	1	B.1.160	0.000031
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.160	0.000031
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.160.16	0.000929
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	B.1.160.20	0.008929
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	B.1.161	0.017241
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.169	0.014925
ORF1ab/nsp6	208	Q208E	Cag	Gag	1	1	B.1.177	0.000013
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.177.12	0.000152
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.177.15	0.000631
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.177.17	0.000821
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.177.19	0.001431
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	B.1.177.21	0.000076
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.177.32	0.00135
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.177.4	0.000211
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.177.51	0.004566
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	B.1.177.57	0.000281
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.177.58	0.001332
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.177.60	0.000218
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.177.63	0.002703
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.177.7	0.000165
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.177.7	0.000165
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.177.73	0.000566
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.177.82	0.000477
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.190	0.01
ORF1ab/nsp6	208	Q208Q	caG	caA	1	1	B.1.2	0.000009
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.206	0.000816
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.210	0.002132
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	B.1.23	0.006061
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	B.1.234	0.000132
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.234	0.000132
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.236	0.002053
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	B.1.243	0.00007
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.247	0.014925
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.311	0.000275
ORF1ab/nsp6	208	Q208Q	caG	caA	1	1	B.1.311	0.000275
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.329	0.000608
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.336	0.002439
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	B.1.349	0.000715
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	B.1.351	0.00003
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.36.18	0.00042
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.36.24	0.006173
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.382	0.008929
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.400	0.000429
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.427	0.00005
ORF1ab/nsp6	208	Q208P	cAg	cCg	1	1	B.1.429	0.000024
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.459	0.004082
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.468	0.005714
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.468	0.005714
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.474	0.001901
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.525	0.000113
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.564	0.000426
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.564	0.000426
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.575	0.000303
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.575.1	0.002439
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.576	0.000907
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.582	0.000491
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.587	0.001898
ORF1ab/nsp6	208	Q208del1	Cag	-ag	1	1	B.1.596	0.000087
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.602	0.006536
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.606	0.006024
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.609	0.000479
ORF1ab/nsp6	208	Q208K	Cag	Aag	1	1	B.1.617.2	0.000004
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	B.1.617.2	0.000004
ORF1ab/nsp6	208	Q208E	Cag	Gag	1	1	B.1.617.2	0.000004
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.619.1	0.000641
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	B.1.621	0.000089
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.621	0.000089
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.1.621.1	0.000506
ORF1ab/nsp6	208	Q208K	Cag	Aag	1	1	B.1.628	0.000352
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.3.1	0.001658
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.40	0.000364
ORF1ab/nsp6	208	Q208X	Cag	Tag	1	1	B.40	0.000364
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.45	0.003831
ORF1ab/nsp6	208	Q208K	Cag	Aag	1	1	B.6	0.00091
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	B.6.6	0.000889
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	C.13	0.025641
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	C.35	0.000774
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	C.36	0.000911
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	C.37	0.000116
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	N.4	0.004255
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	P.1.14	0.000048
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	P.1.15	0.000232
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	P.1.8	0.004785
ORF1ab/nsp6	208	Q208H	caG	caT	1	1	P.2	0.000187
ORF1ab/nsp6	208	Q208R	cAg	cGg	1	1	P.2	0.000187
ORF1ab/nsp6	208	Q208del	CAG	---	1	1	Q.2	0.000613
ORF1ab/nsp6	208	Q208E	Cag	Gag	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.