CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 207

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6207L207FL3776FnonsynCttTtt33673367111591-11593
ORF1ab/nsp6207L207LL3776LsynctTctA4762490.52310911591-11593
ORF1ab/nsp6207L207LL3776LsynctTctC4761890.39705911591-11593
ORF1ab/nsp6207L207LL3776LsynctTctG476380.079831911591-11593
ORF1ab/nsp6207L207IL3776InonsynCttAtt135135111591-11593
ORF1ab/nsp6207L207delL3776deldelCTT---4444111591-11593
ORF1ab/nsp6207L207PL3776PnonsyncTtcCt24230.95833311591-11593
ORF1ab/nsp6207L207PL3776PnonsyncTTcCC2410.041666711591-11593
ORF1ab/nsp6207L207RL3776RnonsyncTtcGt14130.92857111591-11593
ORF1ab/nsp6207L207RL3776RnonsynCTTAGA1410.071428611591-11593
ORF1ab/nsp6207L207HL3776HnonsyncTtcAt11100.90909111591-11593
ORF1ab/nsp6207L207HL3776HnonsyncTTcAC1110.090909111591-11593
ORF1ab/nsp6207L207VL3776VnonsynCttGtt320.66666711591-11593
ORF1ab/nsp6207L207VL3776VnonsynCtTGtA310.33333311591-11593
ORF1ab/nsp6207L207del2L3776del2delcTTc--11111591-11593
ORF1ab/nsp6207L207KL3776KnonsynCTTAAA11111591-11593
ORF1ab/nsp6207L207del1L3776del1delcTtc-t11111591-11593
ORF1ab/nsp6207L207TL3776TnonsynCTtACt11111591-11593

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6207L207FCttTtt33673367All0.000644
ORF1ab/nsp6207L207FCttTtt28372837B.1.1.4340.988846
ORF1ab/nsp6207L207LctTctA249476All0.000048
ORF1ab/nsp6207L207LctTctC189476All0.000036
ORF1ab/nsp6207L207LctTctG38476All0.000007
ORF1ab/nsp6207L207ICttAtt135135All0.000026
ORF1ab/nsp6207L207LctTctA125125AY.330.008347
ORF1ab/nsp6207L207LctTctA104104P.1.100.028025
ORF1ab/nsp6207L207FCttTtt9898B.1.20.000863
ORF1ab/nsp6207L207FCttTtt8585B.1.5430.85
ORF1ab/nsp6207L207LctTctC5970B.1.1.70.000053
ORF1ab/nsp6207L207LctTctG670B.1.1.70.000005
ORF1ab/nsp6207L207LctTctA570B.1.1.70.000004
ORF1ab/nsp6207L207ICttAtt5151B.1.1.70.000046
ORF1ab/nsp6207L207delCTT---4444All0.000008
ORF1ab/nsp6207L207FCttTtt4444B.1.258.30.073702
ORF1ab/nsp6207L207FCttTtt3636AY.40.000056
ORF1ab/nsp6207L207FCttTtt3535B.10.000321
ORF1ab/nsp6207L207LctTctC3535B.1.1770.000461
ORF1ab/nsp6207L207FCttTtt2929B.1.1.70.000026
ORF1ab/nsp6207L207PcTtcCt2324All0.000004
ORF1ab/nsp6207L207PcTTcCC124All0
ORF1ab/nsp6207L207FCttTtt2424B.1.10.000435
ORF1ab/nsp6207L207FCttTtt2424B.1.177.730.01359
ORF1ab/nsp6207L207ICttAtt2121AY.690.00392
ORF1ab/nsp6207L207ICttAtt1616B.1.1770.000211
ORF1ab/nsp6207L207ICttAtt1515AY.40.000023
ORF1ab/nsp6207L207LctTctC915AY.40.000014
ORF1ab/nsp6207L207LctTctG515AY.40.000008
ORF1ab/nsp6207L207LctTctA115AY.40.000002
ORF1ab/nsp6207L207RcTtcGt1314All0.000002
ORF1ab/nsp6207L207RCTTAGA114All0
ORF1ab/nsp6207L207LctTctC1314B.1.20.000114
ORF1ab/nsp6207L207LctTctG114B.1.20.000009
ORF1ab/nsp6207L207delCTT---1313B.1.1.70.000012
ORF1ab/nsp6207L207LctTctC1113B.1.2580.000732
ORF1ab/nsp6207L207LctTctG213B.1.2580.000133
ORF1ab/nsp6207L207FCttTtt1313B.1.4000.005577
ORF1ab/nsp6207L207HcTtcAt1011All0.000002
ORF1ab/nsp6207L207HcTTcAC111All0
ORF1ab/nsp6207L207LctTctC910AY.440.000055
ORF1ab/nsp6207L207LctTctG110AY.440.000006
ORF1ab/nsp6207L207FCttTtt1010B.1.617.20.000038
ORF1ab/nsp6207L207LctTctC69AY.1030.000037
ORF1ab/nsp6207L207LctTctG39AY.1030.000019
ORF1ab/nsp6207L207FCttTtt99AY.250.000054
ORF1ab/nsp6207L207LctTctG58AY.850.002136
ORF1ab/nsp6207L207LctTctC38AY.850.001282
ORF1ab/nsp6207L207LctTctG58P.10.000079
ORF1ab/nsp6207L207LctTctA28P.10.000032
ORF1ab/nsp6207L207LctTctC18P.10.000016
ORF1ab/nsp6207L207ICttAtt77B.1.1.370.00135
ORF1ab/nsp6207L207LctTctC56B.1.617.20.000019
ORF1ab/nsp6207L207LctTctG16B.1.617.20.000004
ORF1ab/nsp6207L207FCttTtt550.277778
ORF1ab/nsp6207L207FCttTtt55AY.290.000079
ORF1ab/nsp6207L207FCttTtt55AY.30.00005
ORF1ab/nsp6207L207HcTtcAt55B.1.1.70.000004
ORF1ab/nsp6207L207PcTtcCt55B.1.1.70.000004
ORF1ab/nsp6207L207FCttTtt55B.1.1770.000066
ORF1ab/nsp6207L207LctTctC45B.1.4290.000094
ORF1ab/nsp6207L207LctTctG15B.1.4290.000024
ORF1ab/nsp6207L207FCttTtt55C.360.004554
ORF1ab/nsp6207L207PcTtcCt55P.1.70.001596
ORF1ab/nsp6207L207LctTctC44A.210.01108
ORF1ab/nsp6207L207FCttTtt44AY.1030.000025
ORF1ab/nsp6207L207ICttAtt44AY.260.000113
ORF1ab/nsp6207L207LctTctG24AY.430.000009
ORF1ab/nsp6207L207LctTctC24AY.430.000009
ORF1ab/nsp6207L207RcTtcGt44AY.440.000024
ORF1ab/nsp6207L207LctTctC44B.10.000037
ORF1ab/nsp6207L207delCTT---44B.10.000037
ORF1ab/nsp6207L207FCttTtt44B.1.2210.000284
ORF1ab/nsp6207L207FCttTtt44B.1.4970.001259
ORF1ab/nsp6207L207delCTT---44B.1.617.20.000015
ORF1ab/nsp6207L207VCttGtt23All0
ORF1ab/nsp6207L207VCtTGtA13All0
ORF1ab/nsp6207L207FCttTtt33AU.30.006329
ORF1ab/nsp6207L207FCttTtt33AY.230.000209
ORF1ab/nsp6207L207LctTctC23AY.230.000139
ORF1ab/nsp6207L207LctTctG13AY.230.00007
ORF1ab/nsp6207L207FCttTtt33AY.4.50.000322
ORF1ab/nsp6207L207LctTctC33AY.410.000882
ORF1ab/nsp6207L207ICttAtt33AY.430.000013
ORF1ab/nsp6207L207LctTctC33B.1.10.000054
ORF1ab/nsp6207L207FCttTtt33B.1.1.2160.002671
ORF1ab/nsp6207L207FCttTtt33B.1.1.2770.002276
ORF1ab/nsp6207L207LctTctC33B.1.1.3060.001315
ORF1ab/nsp6207L207FCttTtt33B.1.177.690.004451
ORF1ab/nsp6207L207FCttTtt33B.1.4290.000071
ORF1ab/nsp6207L207FCttTtt33B.1.4590.012245
ORF1ab/nsp6207L207PcTtcCt23B.1.617.20.000008
ORF1ab/nsp6207L207PcTTcCC13B.1.617.20.000004
ORF1ab/nsp6207L207LctTctC22AY.1020.000053
ORF1ab/nsp6207L207ICttAtt22AY.1030.000012
ORF1ab/nsp6207L207LctTctC22AY.250.000012
ORF1ab/nsp6207L207LctTctG22AY.30.00002
ORF1ab/nsp6207L207FCttTtt22AY.3.10.000171
ORF1ab/nsp6207L207PcTtcCt22AY.40.000003
ORF1ab/nsp6207L207delCTT---22AY.4.50.000215
ORF1ab/nsp6207L207FCttTtt22AY.430.000009
ORF1ab/nsp6207L207delCTT---22AY.440.000012
ORF1ab/nsp6207L207FCttTtt22AY.470.000062
ORF1ab/nsp6207L207delCTT---22AY.650.001066
ORF1ab/nsp6207L207FCttTtt22AY.75.10.000361
ORF1ab/nsp6207L207ICttAtt22B0.000256
ORF1ab/nsp6207L207FCttTtt22B.1.1.2190.01
ORF1ab/nsp6207L207LctTctA22B.1.1.3720.001377
ORF1ab/nsp6207L207FCttTtt22B.1.1.3980.006452
ORF1ab/nsp6207L207FCttTtt22B.1.1.4110.029412
ORF1ab/nsp6207L207FCttTtt22B.1.1600.000062
ORF1ab/nsp6207L207LctTctA22B.1.177.570.000562
ORF1ab/nsp6207L207FCttTtt22B.1.177.810.000379
ORF1ab/nsp6207L207FCttTtt22B.1.2580.000133
ORF1ab/nsp6207L207LctTctA22B.1.4270.000101
ORF1ab/nsp6207L207FCttTtt22B.1.466.20.000782
ORF1ab/nsp6207L207LctTctA22B.1.5250.000226
ORF1ab/nsp6207L207LctTctC12B.1.5770.000687
ORF1ab/nsp6207L207LctTctA12B.1.5770.000687
ORF1ab/nsp6207L207LctTctA22B.1.617.10.000258
ORF1ab/nsp6207L207RcTtcGt22B.1.617.20.000008
ORF1ab/nsp6207L207ICttAtt22P.10.000032
ORF1ab/nsp6207L207TCTtACt110.055556
ORF1ab/nsp6207L207PcTtcCt110.055556
ORF1ab/nsp6207L207ICttAtt110.055556
ORF1ab/nsp6207L207FCttTtt11A0.000387
ORF1ab/nsp6207L207delCTT---11A0.000387
ORF1ab/nsp6207L207del2cTTc--11All0
ORF1ab/nsp6207L207del1cTtc-t11All0
ORF1ab/nsp6207L207KCTTAAA11All0
ORF1ab/nsp6207L207TCTtACt11All0
ORF1ab/nsp6207L207FCttTtt11AY.1000.000046
ORF1ab/nsp6207L207PcTtcCt11AY.1030.000006
ORF1ab/nsp6207L207ICttAtt11AY.1060.000335
ORF1ab/nsp6207L207RcTtcGt11AY.1160.000287
ORF1ab/nsp6207L207PcTtcCt11AY.1190.000035
ORF1ab/nsp6207L207delCTT---11AY.1190.000035
ORF1ab/nsp6207L207FCttTtt11AY.1210.000135
ORF1ab/nsp6207L207FCttTtt11AY.130.000161
ORF1ab/nsp6207L207LctTctC11AY.130.000161
ORF1ab/nsp6207L207FCttTtt11AY.16.10.00047
ORF1ab/nsp6207L207RcTtcGt11AY.200.000039
ORF1ab/nsp6207L207FCttTtt11AY.260.000028
ORF1ab/nsp6207L207ICttAtt11AY.290.000016
ORF1ab/nsp6207L207FCttTtt11AY.340.000097
ORF1ab/nsp6207L207PcTtcCt11AY.380.000499
ORF1ab/nsp6207L207LctTctC11AY.390.000025
ORF1ab/nsp6207L207FCttTtt11AY.390.000025
ORF1ab/nsp6207L207ICttAtt11AY.390.000025
ORF1ab/nsp6207L207FCttTtt11AY.39.10.00004
ORF1ab/nsp6207L207KCTTAAA11AY.40.000002
ORF1ab/nsp6207L207delCTT---11AY.40.000002
ORF1ab/nsp6207L207FCttTtt11AY.4.20.000022
ORF1ab/nsp6207L207ICttAtt11AY.4.20.000022
ORF1ab/nsp6207L207LctTctC11AY.4.50.000107
ORF1ab/nsp6207L207delCTT---11AY.420.00004
ORF1ab/nsp6207L207PcTtcCt11AY.430.000004
ORF1ab/nsp6207L207delCTT---11AY.430.000004
ORF1ab/nsp6207L207HcTtcAt11AY.440.000006
ORF1ab/nsp6207L207FCttTtt11AY.46.60.000072
ORF1ab/nsp6207L207FCttTtt11AY.50.000021
ORF1ab/nsp6207L207RcTtcGt11AY.5.40.000277
ORF1ab/nsp6207L207RCTTAGA11AY.550.000917
ORF1ab/nsp6207L207FCttTtt11AY.610.000105
ORF1ab/nsp6207L207delCTT---11AY.620.000436
ORF1ab/nsp6207L207FCttTtt11AY.680.000274
ORF1ab/nsp6207L207RcTtcGt11AY.750.000056
ORF1ab/nsp6207L207HcTTcAC11AY.750.000056
ORF1ab/nsp6207L207ICttAtt11AY.750.000056
ORF1ab/nsp6207L207delCTT---11AY.750.000056
ORF1ab/nsp6207L207delCTT---11AY.780.001541
ORF1ab/nsp6207L207VCtTGtA11AY.9.20.000037
ORF1ab/nsp6207L207RcTtcGt11AY.970.001701
ORF1ab/nsp6207L207FCttTtt11AY.98.10.000048
ORF1ab/nsp6207L207LctTctC11AY.99.20.000092
ORF1ab/nsp6207L207FCttTtt11B0.000128
ORF1ab/nsp6207L207LctTctC11B0.000128
ORF1ab/nsp6207L207PcTtcCt11B0.000128
ORF1ab/nsp6207L207VCttGtt11B.10.000009
ORF1ab/nsp6207L207del1cTtc-t11B.10.000009
ORF1ab/nsp6207L207del2cTTc--11B.10.000009
ORF1ab/nsp6207L207RcTtcGt11B.1.10.000018
ORF1ab/nsp6207L207FCttTtt11B.1.1.2070.001182
ORF1ab/nsp6207L207FCttTtt11B.1.1.2220.000204
ORF1ab/nsp6207L207FCttTtt11B.1.1.2840.000107
ORF1ab/nsp6207L207FCttTtt11B.1.1.3040.002809
ORF1ab/nsp6207L207delCTT---11B.1.1.3240.052632
ORF1ab/nsp6207L207FCttTtt11B.1.1.3260.001761
ORF1ab/nsp6207L207FCttTtt11B.1.1.330.000421
ORF1ab/nsp6207L207LctTctC11B.1.1.3680.003086
ORF1ab/nsp6207L207FCttTtt11B.1.1.4850.016667
ORF1ab/nsp6207L207FCttTtt11B.1.1.5190.00004
ORF1ab/nsp6207L207PcTtcCt11B.1.1.5190.00004
ORF1ab/nsp6207L207LctTctG11B.1.1.5190.00004
ORF1ab/nsp6207L207LctTctC11B.1.1.5260.003546
ORF1ab/nsp6207L207FCttTtt11B.1.1.700.000341
ORF1ab/nsp6207L207LctTctG11B.1.1600.000031
ORF1ab/nsp6207L207ICttAtt11B.1.1600.000031
ORF1ab/nsp6207L207delCTT---11B.1.1610.017241
ORF1ab/nsp6207L207PcTtcCt11B.1.1770.000013
ORF1ab/nsp6207L207delCTT---11B.1.177.180.00116
ORF1ab/nsp6207L207ICttAtt11B.1.177.400.005155
ORF1ab/nsp6207L207delCTT---11B.1.177.570.000281
ORF1ab/nsp6207L207delCTT---11B.1.177.830.001481
ORF1ab/nsp6207L207delCTT---11B.1.177.90.001332
ORF1ab/nsp6207L207RcTtcGt11B.1.20.000009
ORF1ab/nsp6207L207HcTtcAt11B.1.20.000009
ORF1ab/nsp6207L207FCttTtt11B.1.2060.000816
ORF1ab/nsp6207L207FCttTtt11B.1.214.20.0006
ORF1ab/nsp6207L207LctTctC11B.1.2400.000216
ORF1ab/nsp6207L207FCttTtt11B.1.2430.00007
ORF1ab/nsp6207L207FCttTtt11B.1.258.170.000104
ORF1ab/nsp6207L207FCttTtt11B.1.36.180.00042
ORF1ab/nsp6207L207FCttTtt11B.1.3620.001541
ORF1ab/nsp6207L207HcTtcAt11B.1.5250.000113
ORF1ab/nsp6207L207ICttAtt11B.1.5260.000024
ORF1ab/nsp6207L207LctTctG11B.1.5260.000024
ORF1ab/nsp6207L207FCttTtt11B.1.5260.000024
ORF1ab/nsp6207L207FCttTtt11B.1.5270.003704
ORF1ab/nsp6207L207ICttAtt11B.1.5870.001898
ORF1ab/nsp6207L207FCttTtt11B.1.5900.004545
ORF1ab/nsp6207L207FCttTtt11B.1.5960.000087
ORF1ab/nsp6207L207FCttTtt11B.1.6050.005952
ORF1ab/nsp6207L207VCttGtt11B.1.617.20.000004
ORF1ab/nsp6207L207ICttAtt11B.1.6370.000073
ORF1ab/nsp6207L207PcTtcCt11B.1.930.000934
ORF1ab/nsp6207L207delCTT---11C.360.000911
ORF1ab/nsp6207L207FCttTtt11C.36.30.000567
ORF1ab/nsp6207L207FCttTtt11D.20.000075
ORF1ab/nsp6207L207delCTT---11N.40.004255
ORF1ab/nsp6207L207HcTtcAt11P.10.000016
ORF1ab/nsp6207L207HcTtcAt11P.1.10.000318
ORF1ab/nsp6207L207FCttTtt11P.1.120.000484
ORF1ab/nsp6207L207LctTctA11P.1.120.000484
ORF1ab/nsp6207L207ICttAtt11P.1.20.001156
ORF1ab/nsp6207L207delCTT---11Q.20.000613
ORF1ab/nsp6207L207FCttTtt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.