CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 207

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6207L207FL3776FnonsynCttTtt33673367111591-11593
ORF1ab/nsp6207L207LL3776LsynctTctA4762490.52310911591-11593
ORF1ab/nsp6207L207LL3776LsynctTctC4761890.39705911591-11593
ORF1ab/nsp6207L207LL3776LsynctTctG476380.079831911591-11593
ORF1ab/nsp6207L207IL3776InonsynCttAtt135135111591-11593
ORF1ab/nsp6207L207delL3776deldelCTT---4444111591-11593
ORF1ab/nsp6207L207PL3776PnonsyncTtcCt24230.95833311591-11593
ORF1ab/nsp6207L207PL3776PnonsyncTTcCC2410.041666711591-11593
ORF1ab/nsp6207L207RL3776RnonsyncTtcGt14130.92857111591-11593
ORF1ab/nsp6207L207RL3776RnonsynCTTAGA1410.071428611591-11593
ORF1ab/nsp6207L207HL3776HnonsyncTtcAt11100.90909111591-11593
ORF1ab/nsp6207L207HL3776HnonsyncTTcAC1110.090909111591-11593
ORF1ab/nsp6207L207VL3776VnonsynCttGtt320.66666711591-11593
ORF1ab/nsp6207L207VL3776VnonsynCtTGtA310.33333311591-11593
ORF1ab/nsp6207L207del2L3776del2delcTTc--11111591-11593
ORF1ab/nsp6207L207KL3776KnonsynCTTAAA11111591-11593
ORF1ab/nsp6207L207del1L3776del1delcTtc-t11111591-11593
ORF1ab/nsp6207L207TL3776TnonsynCTtACt11111591-11593

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6207L207FCttTtt33673367All0.000644
ORF1ab/nsp6207L207FCttTtt28372837B.1.1.4340.988846
ORF1ab/nsp6207L207LctTctA249476All0.000048
ORF1ab/nsp6207L207LctTctC189476All0.000036
ORF1ab/nsp6207L207LctTctG38476All0.000007
ORF1ab/nsp6207L207ICttAtt135135All0.000026
ORF1ab/nsp6207L207LctTctA125125AY.330.008347
ORF1ab/nsp6207L207LctTctA104104P.1.100.028025
ORF1ab/nsp6207L207FCttTtt9898B.1.20.000863
ORF1ab/nsp6207L207FCttTtt8585B.1.5430.85
ORF1ab/nsp6207L207LctTctC5970B.1.1.70.000053
ORF1ab/nsp6207L207LctTctG670B.1.1.70.000005
ORF1ab/nsp6207L207LctTctA570B.1.1.70.000004
ORF1ab/nsp6207L207ICttAtt5151B.1.1.70.000046
ORF1ab/nsp6207L207delCTT---4444All0.000008
ORF1ab/nsp6207L207FCttTtt4444B.1.258.30.073702
ORF1ab/nsp6207L207FCttTtt3636AY.40.000056
ORF1ab/nsp6207L207FCttTtt3535B.10.000321
ORF1ab/nsp6207L207LctTctC3535B.1.1770.000461
ORF1ab/nsp6207L207FCttTtt2929B.1.1.70.000026
ORF1ab/nsp6207L207PcTtcCt2324All0.000004
ORF1ab/nsp6207L207PcTTcCC124All0
ORF1ab/nsp6207L207FCttTtt2424B.1.10.000435
ORF1ab/nsp6207L207FCttTtt2424B.1.177.730.01359
ORF1ab/nsp6207L207ICttAtt2121AY.690.00392
ORF1ab/nsp6207L207ICttAtt1616B.1.1770.000211
ORF1ab/nsp6207L207ICttAtt1515AY.40.000023
ORF1ab/nsp6207L207LctTctC915AY.40.000014
ORF1ab/nsp6207L207LctTctG515AY.40.000008
ORF1ab/nsp6207L207LctTctA115AY.40.000002
ORF1ab/nsp6207L207RcTtcGt1314All0.000002
ORF1ab/nsp6207L207RCTTAGA114All0
ORF1ab/nsp6207L207LctTctC1314B.1.20.000114
ORF1ab/nsp6207L207LctTctG114B.1.20.000009
ORF1ab/nsp6207L207delCTT---1313B.1.1.70.000012
ORF1ab/nsp6207L207LctTctC1113B.1.2580.000732
ORF1ab/nsp6207L207LctTctG213B.1.2580.000133
ORF1ab/nsp6207L207FCttTtt1313B.1.4000.005577
ORF1ab/nsp6207L207HcTtcAt1011All0.000002
ORF1ab/nsp6207L207HcTTcAC111All0
ORF1ab/nsp6207L207LctTctC910AY.440.000055
ORF1ab/nsp6207L207LctTctG110AY.440.000006
ORF1ab/nsp6207L207FCttTtt1010B.1.617.20.000038
ORF1ab/nsp6207L207LctTctC69AY.1030.000037
ORF1ab/nsp6207L207LctTctG39AY.1030.000019
ORF1ab/nsp6207L207FCttTtt99AY.250.000054
ORF1ab/nsp6207L207LctTctG58AY.850.002136
ORF1ab/nsp6207L207LctTctC38AY.850.001282
ORF1ab/nsp6207L207LctTctG58P.10.000079
ORF1ab/nsp6207L207LctTctA28P.10.000032
ORF1ab/nsp6207L207LctTctC18P.10.000016
ORF1ab/nsp6207L207ICttAtt77B.1.1.370.00135
ORF1ab/nsp6207L207LctTctC56B.1.617.20.000019
ORF1ab/nsp6207L207LctTctG16B.1.617.20.000004
ORF1ab/nsp6207L207FCttTtt550.277778
ORF1ab/nsp6207L207FCttTtt55AY.290.000079
ORF1ab/nsp6207L207FCttTtt55AY.30.00005
ORF1ab/nsp6207L207HcTtcAt55B.1.1.70.000004
ORF1ab/nsp6207L207PcTtcCt55B.1.1.70.000004
ORF1ab/nsp6207L207FCttTtt55B.1.1770.000066
ORF1ab/nsp6207L207LctTctC45B.1.4290.000094
ORF1ab/nsp6207L207LctTctG15B.1.4290.000024
ORF1ab/nsp6207L207FCttTtt55C.360.004554
ORF1ab/nsp6207L207PcTtcCt55P.1.70.001596
ORF1ab/nsp6207L207LctTctC44A.210.01108
ORF1ab/nsp6207L207FCttTtt44AY.1030.000025
ORF1ab/nsp6207L207ICttAtt44AY.260.000113
ORF1ab/nsp6207L207LctTctG24AY.430.000009
ORF1ab/nsp6207L207LctTctC24AY.430.000009
ORF1ab/nsp6207L207RcTtcGt44AY.440.000024
ORF1ab/nsp6207L207LctTctC44B.10.000037
ORF1ab/nsp6207L207delCTT---44B.10.000037
ORF1ab/nsp6207L207FCttTtt44B.1.2210.000284
ORF1ab/nsp6207L207FCttTtt44B.1.4970.001259
ORF1ab/nsp6207L207delCTT---44B.1.617.20.000015
ORF1ab/nsp6207L207VCttGtt23All0
ORF1ab/nsp6207L207VCtTGtA13All0
ORF1ab/nsp6207L207FCttTtt33AU.30.006329
ORF1ab/nsp6207L207FCttTtt33AY.230.000209
ORF1ab/nsp6207L207LctTctC23AY.230.000139
ORF1ab/nsp6207L207LctTctG13AY.230.00007
ORF1ab/nsp6207L207FCttTtt33AY.4.50.000322
ORF1ab/nsp6207L207LctTctC33AY.410.000882
ORF1ab/nsp6207L207ICttAtt33AY.430.000013
ORF1ab/nsp6207L207LctTctC33B.1.10.000054
ORF1ab/nsp6207L207FCttTtt33B.1.1.2160.002671
ORF1ab/nsp6207L207FCttTtt33B.1.1.2770.002276
ORF1ab/nsp6207L207LctTctC33B.1.1.3060.001315
ORF1ab/nsp6207L207FCttTtt33B.1.177.690.004451
ORF1ab/nsp6207L207FCttTtt33B.1.4290.000071
ORF1ab/nsp6207L207FCttTtt33B.1.4590.012245
ORF1ab/nsp6207L207PcTtcCt23B.1.617.20.000008
ORF1ab/nsp6207L207PcTTcCC13B.1.617.20.000004
ORF1ab/nsp6207L207LctTctC22AY.1020.000053
ORF1ab/nsp6207L207ICttAtt22AY.1030.000012
ORF1ab/nsp6207L207LctTctC22AY.250.000012
ORF1ab/nsp6207L207LctTctG22AY.30.00002
ORF1ab/nsp6207L207FCttTtt22AY.3.10.000171
ORF1ab/nsp6207L207PcTtcCt22AY.40.000003
ORF1ab/nsp6207L207delCTT---22AY.4.50.000215
ORF1ab/nsp6207L207FCttTtt22AY.430.000009
ORF1ab/nsp6207L207delCTT---22AY.440.000012
ORF1ab/nsp6207L207FCttTtt22AY.470.000062
ORF1ab/nsp6207L207delCTT---22AY.650.001066
ORF1ab/nsp6207L207FCttTtt22AY.75.10.000361
ORF1ab/nsp6207L207ICttAtt22B0.000256
ORF1ab/nsp6207L207FCttTtt22B.1.1.2190.01
ORF1ab/nsp6207L207LctTctA22B.1.1.3720.001377
ORF1ab/nsp6207L207FCttTtt22B.1.1.3980.006452
ORF1ab/nsp6207L207FCttTtt22B.1.1.4110.029412
ORF1ab/nsp6207L207FCttTtt22B.1.1600.000062
ORF1ab/nsp6207L207LctTctA22B.1.177.570.000562
ORF1ab/nsp6207L207FCttTtt22B.1.177.810.000379
ORF1ab/nsp6207L207FCttTtt22B.1.2580.000133
ORF1ab/nsp6207L207LctTctA22B.1.4270.000101
ORF1ab/nsp6207L207FCttTtt22B.1.466.20.000782
ORF1ab/nsp6207L207LctTctA22B.1.5250.000226
ORF1ab/nsp6207L207LctTctC12B.1.5770.000687
ORF1ab/nsp6207L207LctTctA12B.1.5770.000687
ORF1ab/nsp6207L207LctTctA22B.1.617.10.000258
ORF1ab/nsp6207L207RcTtcGt22B.1.617.20.000008
ORF1ab/nsp6207L207ICttAtt22P.10.000032
ORF1ab/nsp6207L207TCTtACt110.055556
ORF1ab/nsp6207L207PcTtcCt110.055556
ORF1ab/nsp6207L207ICttAtt110.055556
ORF1ab/nsp6207L207FCttTtt11A0.000387
ORF1ab/nsp6207L207delCTT---11A0.000387
ORF1ab/nsp6207L207del2cTTc--11All0
ORF1ab/nsp6207L207del1cTtc-t11All0
ORF1ab/nsp6207L207KCTTAAA11All0
ORF1ab/nsp6207L207TCTtACt11All0
ORF1ab/nsp6207L207FCttTtt11AY.1000.000046
ORF1ab/nsp6207L207PcTtcCt11AY.1030.000006
ORF1ab/nsp6207L207ICttAtt11AY.1060.000335
ORF1ab/nsp6207L207RcTtcGt11AY.1160.000287
ORF1ab/nsp6207L207PcTtcCt11AY.1190.000035
ORF1ab/nsp6207L207delCTT---11AY.1190.000035
ORF1ab/nsp6207L207FCttTtt11AY.1210.000135
ORF1ab/nsp6207L207FCttTtt11AY.130.000161
ORF1ab/nsp6207L207LctTctC11AY.130.000161
ORF1ab/nsp6207L207FCttTtt11AY.16.10.00047
ORF1ab/nsp6207L207RcTtcGt11AY.200.000039
ORF1ab/nsp6207L207FCttTtt11AY.260.000028
ORF1ab/nsp6207L207ICttAtt11AY.290.000016
ORF1ab/nsp6207L207FCttTtt11AY.340.000097
ORF1ab/nsp6207L207PcTtcCt11AY.380.000499
ORF1ab/nsp6207L207LctTctC11AY.390.000025
ORF1ab/nsp6207L207FCttTtt11AY.390.000025
ORF1ab/nsp6207L207ICttAtt11AY.390.000025
ORF1ab/nsp6207L207FCttTtt11AY.39.10.00004
ORF1ab/nsp6207L207KCTTAAA11AY.40.000002
ORF1ab/nsp6207L207delCTT---11AY.40.000002
ORF1ab/nsp6207L207FCttTtt11AY.4.20.000022
ORF1ab/nsp6207L207ICttAtt11AY.4.20.000022
ORF1ab/nsp6207L207LctTctC11AY.4.50.000107
ORF1ab/nsp6207L207delCTT---11AY.420.00004
ORF1ab/nsp6207L207PcTtcCt11AY.430.000004
ORF1ab/nsp6207L207delCTT---11AY.430.000004
ORF1ab/nsp6207L207HcTtcAt11AY.440.000006
ORF1ab/nsp6207L207FCttTtt11AY.46.60.000072
ORF1ab/nsp6207L207FCttTtt11AY.50.000021
ORF1ab/nsp6207L207RcTtcGt11AY.5.40.000277
ORF1ab/nsp6207L207RCTTAGA11AY.550.000917
ORF1ab/nsp6207L207FCttTtt11AY.610.000105
ORF1ab/nsp6207L207delCTT---11AY.620.000436
ORF1ab/nsp6207L207FCttTtt11AY.680.000274
ORF1ab/nsp6207L207RcTtcGt11AY.750.000056
ORF1ab/nsp6207L207HcTTcAC11AY.750.000056
ORF1ab/nsp6207L207ICttAtt11AY.750.000056
ORF1ab/nsp6207L207delCTT---11AY.750.000056
ORF1ab/nsp6207L207delCTT---11AY.780.001541
ORF1ab/nsp6207L207VCtTGtA11AY.9.20.000037
ORF1ab/nsp6207L207RcTtcGt11AY.970.001701
ORF1ab/nsp6207L207FCttTtt11AY.98.10.000048
ORF1ab/nsp6207L207LctTctC11AY.99.20.000092
ORF1ab/nsp6207L207FCttTtt11B0.000128
ORF1ab/nsp6207L207LctTctC11B0.000128
ORF1ab/nsp6207L207PcTtcCt11B0.000128
ORF1ab/nsp6207L207VCttGtt11B.10.000009
ORF1ab/nsp6207L207del1cTtc-t11B.10.000009
ORF1ab/nsp6207L207del2cTTc--11B.10.000009
ORF1ab/nsp6207L207RcTtcGt11B.1.10.000018
ORF1ab/nsp6207L207FCttTtt11B.1.1.2070.001182
ORF1ab/nsp6207L207FCttTtt11B.1.1.2220.000204
ORF1ab/nsp6207L207FCttTtt11B.1.1.2840.000107
ORF1ab/nsp6207L207FCttTtt11B.1.1.3040.002809
ORF1ab/nsp6207L207delCTT---11B.1.1.3240.052632
ORF1ab/nsp6207L207FCttTtt11B.1.1.3260.001761
ORF1ab/nsp6207L207FCttTtt11B.1.1.330.000421
ORF1ab/nsp6207L207LctTctC11B.1.1.3680.003086
ORF1ab/nsp6207L207FCttTtt11B.1.1.4850.016667
ORF1ab/nsp6207L207FCttTtt11B.1.1.5190.00004
ORF1ab/nsp6207L207PcTtcCt11B.1.1.5190.00004
ORF1ab/nsp6207L207LctTctG11B.1.1.5190.00004
ORF1ab/nsp6207L207LctTctC11B.1.1.5260.003546
ORF1ab/nsp6207L207FCttTtt11B.1.1.700.000341
ORF1ab/nsp6207L207LctTctG11B.1.1600.000031
ORF1ab/nsp6207L207ICttAtt11B.1.1600.000031
ORF1ab/nsp6207L207delCTT---11B.1.1610.017241
ORF1ab/nsp6207L207PcTtcCt11B.1.1770.000013
ORF1ab/nsp6207L207delCTT---11B.1.177.180.00116
ORF1ab/nsp6207L207ICttAtt11B.1.177.400.005155
ORF1ab/nsp6207L207delCTT---11B.1.177.570.000281
ORF1ab/nsp6207L207delCTT---11B.1.177.830.001481
ORF1ab/nsp6207L207delCTT---11B.1.177.90.001332
ORF1ab/nsp6207L207RcTtcGt11B.1.20.000009
ORF1ab/nsp6207L207HcTtcAt11B.1.20.000009
ORF1ab/nsp6207L207FCttTtt11B.1.2060.000816
ORF1ab/nsp6207L207FCttTtt11B.1.214.20.0006
ORF1ab/nsp6207L207LctTctC11B.1.2400.000216
ORF1ab/nsp6207L207FCttTtt11B.1.2430.00007
ORF1ab/nsp6207L207FCttTtt11B.1.258.170.000104
ORF1ab/nsp6207L207FCttTtt11B.1.36.180.00042
ORF1ab/nsp6207L207FCttTtt11B.1.3620.001541
ORF1ab/nsp6207L207HcTtcAt11B.1.5250.000113
ORF1ab/nsp6207L207ICttAtt11B.1.5260.000024
ORF1ab/nsp6207L207LctTctG11B.1.5260.000024
ORF1ab/nsp6207L207FCttTtt11B.1.5260.000024
ORF1ab/nsp6207L207FCttTtt11B.1.5270.003704
ORF1ab/nsp6207L207ICttAtt11B.1.5870.001898
ORF1ab/nsp6207L207FCttTtt11B.1.5900.004545
ORF1ab/nsp6207L207FCttTtt11B.1.5960.000087
ORF1ab/nsp6207L207FCttTtt11B.1.6050.005952
ORF1ab/nsp6207L207VCttGtt11B.1.617.20.000004
ORF1ab/nsp6207L207ICttAtt11B.1.6370.000073
ORF1ab/nsp6207L207PcTtcCt11B.1.930.000934
ORF1ab/nsp6207L207delCTT---11C.360.000911
ORF1ab/nsp6207L207FCttTtt11C.36.30.000567
ORF1ab/nsp6207L207FCttTtt11D.20.000075
ORF1ab/nsp6207L207delCTT---11N.40.004255
ORF1ab/nsp6207L207HcTtcAt11P.10.000016
ORF1ab/nsp6207L207HcTtcAt11P.1.10.000318
ORF1ab/nsp6207L207FCttTtt11P.1.120.000484
ORF1ab/nsp6207L207LctTctA11P.1.120.000484
ORF1ab/nsp6207L207ICttAtt11P.1.20.001156
ORF1ab/nsp6207L207delCTT---11Q.20.000613
ORF1ab/nsp6207L207FCttTtt11R.10.00009