CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 2 & Codon = gcG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp62A2AA3571AsyngcAgcG20065050.25174510976-10978

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp62A2AgcAgcG5052006All0.000097
ORF1ab/nsp62A2AgcAgcG1526B.1.2580.000067
ORF1ab/nsp62A2AgcAgcG293306AY.550.268807
ORF1ab/nsp62A2AgcAgcG108121AY.40.000168
ORF1ab/nsp62A2AgcAgcG1129B.1.1.70.00001
ORF1ab/nsp62A2AgcAgcG2323AY.200.000894
ORF1ab/nsp62A2AgcAgcG721P.10.00011
ORF1ab/nsp62A2AgcAgcG1011B.1.617.20.000038
ORF1ab/nsp62A2AgcAgcG210B.10.000018
ORF1ab/nsp62A2AgcAgcG88AY.750.000448
ORF1ab/nsp62A2AgcAgcG25AY.1030.000012
ORF1ab/nsp62A2AgcAgcG44AY.30.00004
ORF1ab/nsp62A2AgcAgcG23AY.430.000009
ORF1ab/nsp62A2AgcAgcG33AY.490.009585
ORF1ab/nsp62A2AgcAgcG33AY.670.001393
ORF1ab/nsp62A2AgcAgcG13B.1.3510.00003
ORF1ab/nsp62A2AgcAgcG12AY.250.000006
ORF1ab/nsp62A2AgcAgcG22AY.9.20.000073
ORF1ab/nsp62A2AgcAgcG22B.1.1.4200.002012
ORF1ab/nsp62A2AgcAgcG12B.1.20.000009
ORF1ab/nsp62A2AgcAgcG22B.1.2210.000142
ORF1ab/nsp62A2AgcAgcG22B.1.4290.000047
ORF1ab/nsp62A2AgcAgcG22P.1.120.000968
ORF1ab/nsp62A2AgcAgcG11AY.1000.000046
ORF1ab/nsp62A2AgcAgcG11AY.130.000161
ORF1ab/nsp62A2AgcAgcG11AY.440.000006
ORF1ab/nsp62A2AgcAgcG11AY.590.00053
ORF1ab/nsp62A2AgcAgcG11AY.680.000274
ORF1ab/nsp62A2AgcAgcG11AY.850.000427
ORF1ab/nsp62A2AgcAgcG11AY.920.000287
ORF1ab/nsp62A2AgcAgcG11AY.99.20.000092
ORF1ab/nsp62A2AgcAgcG11B.1.1.5190.00004
ORF1ab/nsp62A2AgcAgcG11B.1.177.160.000664
ORF1ab/nsp62A2AgcAgcG11B.1.177.650.000665
ORF1ab/nsp62A2AgcAgcG11B.60.00091
ORF1ab/nsp62A2AgcAgcG11P.20.000187
ORF1ab/nsp62A2AgcAgcG11Q.30.000145
ORF1ab/nsp62A2AgcAgcG11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.