CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp62A2VA3571VnonsyngCagTa37696376850.99970810976-10978
ORF1ab/nsp62A2VA3571VnonsyngCAgTG3769680.00021222410976-10978
ORF1ab/nsp62A2VA3571VnonsyngCAgTC3769620.00005305610976-10978
ORF1ab/nsp62A2VA3571VnonsyngCAgTT3769610.00002652810976-10978
ORF1ab/nsp62A2AA3571AsyngcAgcT200614680.73180510976-10978
ORF1ab/nsp62A2AA3571AsyngcAgcG20065050.25174510976-10978
ORF1ab/nsp62A2AA3571AsyngcAgcC2006330.016450610976-10978
ORF1ab/nsp62A2TA3571TnonsynGcaAca129129110976-10978
ORF1ab/nsp62A2SA3571SnonsynGcaTca94920.97872310976-10978
ORF1ab/nsp62A2SA3571SnonsynGcATcC9420.021276610976-10978
ORF1ab/nsp62A2delA3571deldelGCA---5353110976-10978
ORF1ab/nsp62A2EA3571EnonsyngCagAa4141110976-10978
ORF1ab/nsp62A2GA3571GnonsyngCagGa1313110976-10978
ORF1ab/nsp62A2del1A3571del1delGca-ca940.44444410976-10978
ORF1ab/nsp62A2del1A3571del1delgcAgc-940.44444410976-10978
ORF1ab/nsp62A2del1A3571del1delGCA-NN910.11111110976-10978
ORF1ab/nsp62A2PA3571PnonsynGcaCca66110976-10978
ORF1ab/nsp62A2FA3571FnonsynGCATTC22110976-10978
ORF1ab/nsp62A2LA3571LnonsynGCaTTa22110976-10978
ORF1ab/nsp62A2del2A3571del2delGCa--a210.510976-10978
ORF1ab/nsp62A2del2A3571del2delgCAg--210.510976-10978
ORF1ab/nsp62A2RA3571RnonsynGCACGT11110976-10978
ORF1ab/nsp62A2CA3571CnonsynGCATGT11110976-10978
ORF1ab/nsp62A2MA3571MnonsynGCAATG11110976-10978

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp62A2VgCagTa3768537696All0.007208
ORF1ab/nsp62A2VgCAgTG837696All0.000002
ORF1ab/nsp62A2VgCAgTC237696All0
ORF1ab/nsp62A2VgCAgTT137696All0
ORF1ab/nsp62A2VgCagTa1305213052AY.46.60.942451
ORF1ab/nsp62A2VgCagTa67696770AY.460.704517
ORF1ab/nsp62A2VgCAgTG16770AY.460.000104
ORF1ab/nsp62A2VgCagTa50405040AY.46.51
ORF1ab/nsp62A2VgCagTa41104110AY.46.40.676098
ORF1ab/nsp62A2VgCagTa30393039B.1.617.20.011443
ORF1ab/nsp62A2AgcAgcT14682006All0.000281
ORF1ab/nsp62A2AgcAgcG5052006All0.000097
ORF1ab/nsp62A2AgcAgcC332006All0.000006
ORF1ab/nsp62A2VgCagTa10651065AY.46.30.994398
ORF1ab/nsp62A2VgCagTa969969AY.46.20.615629
ORF1ab/nsp62A2VgCagTa835835B.1.1.2070.986998
ORF1ab/nsp62A2VgCagTa684684AY.46.10.702259
ORF1ab/nsp62A2AgcAgcT566566B.1.258.30.948074
ORF1ab/nsp62A2AgcAgcT525526B.1.2580.034937
ORF1ab/nsp62A2AgcAgcG1526B.1.2580.000067
ORF1ab/nsp62A2VgCagTa482482B.1.177.110.818336
ORF1ab/nsp62A2VgCagTa375375AY.960.778008
ORF1ab/nsp62A2AgcAgcG293306AY.550.268807
ORF1ab/nsp62A2AgcAgcT11306AY.550.010092
ORF1ab/nsp62A2AgcAgcC2306AY.550.001835
ORF1ab/nsp62A2AgcAgcT212212B.1.258.20.954955
ORF1ab/nsp62A2VgCagTa148148B.1.1.70.000132
ORF1ab/nsp62A2TGcaAca129129All0.000025
ORF1ab/nsp62A2VgCagTa128128B.1.20.001127
ORF1ab/nsp62A2AgcAgcG108121AY.40.000168
ORF1ab/nsp62A2AgcAgcT12121AY.40.000019
ORF1ab/nsp62A2AgcAgcC1121AY.40.000002
ORF1ab/nsp62A2VgCagTa110110AY.40.000171
ORF1ab/nsp62A2SGcaTca9294All0.000018
ORF1ab/nsp62A2SGcATcC294All0
ORF1ab/nsp62A2VgCagTa9191AY.1030.000565
ORF1ab/nsp62A2VgCagTa8687AY.390.002125
ORF1ab/nsp62A2VgCAgTT187AY.390.000025
ORF1ab/nsp62A2VgCagTa6363AY.1170.005325
ORF1ab/nsp62A2AgcAgcT6161B.1.258.240.655914
ORF1ab/nsp62A2delGCA---5353All0.00001
ORF1ab/nsp62A2VgCagTa4747AY.430.000208
ORF1ab/nsp62A2TGcaAca4646B.1.1.70.000041
ORF1ab/nsp62A2VgCagTa4545AY.420.00181
ORF1ab/nsp62A2VgCagTa4444B.1.1.4110.647059
ORF1ab/nsp62A2VgCagTa4242B.10.000385
ORF1ab/nsp62A2EgCagAa4141All0.000008
ORF1ab/nsp62A2VgCagTa3939B.1.1.1890.059002
ORF1ab/nsp62A2VgCagTa3838AY.250.000229
ORF1ab/nsp62A2SGcaTca3737B.1.1.70.000033
ORF1ab/nsp62A2VgCagTa2929AY.4.20.000629
ORF1ab/nsp62A2AgcAgcT1529B.1.1.70.000013
ORF1ab/nsp62A2AgcAgcG1129B.1.1.70.00001
ORF1ab/nsp62A2AgcAgcC329B.1.1.70.000003
ORF1ab/nsp62A2AgcAgcT2424G.11
ORF1ab/nsp62A2AgcAgcG2323AY.200.000894
ORF1ab/nsp62A2VgCagTa1721P.10.000268
ORF1ab/nsp62A2AgcAgcC1421P.10.000221
ORF1ab/nsp62A2AgcAgcG721P.10.00011
ORF1ab/nsp62A2VgCAgTG421P.10.000063
ORF1ab/nsp62A2VgCagTa1919AY.440.000116
ORF1ab/nsp62A2VgCagTa1818AY.200.0007
ORF1ab/nsp62A2VgCagTa1818AY.450.00219
ORF1ab/nsp62A2VgCagTa1818B.1.10.000327
ORF1ab/nsp62A2VgCagTa1616AY.920.004596
ORF1ab/nsp62A2delGCA---1616B.1.1.70.000014
ORF1ab/nsp62A2TGcaAca1414AY.40.000022
ORF1ab/nsp62A2VgCagTa1414AY.650.007463
ORF1ab/nsp62A2GgCagGa1313All0.000002
ORF1ab/nsp62A2VgCagTa1212B.1.3510.000357
ORF1ab/nsp62A2SGcaTca1212B.1.3510.000357
ORF1ab/nsp62A2EgCagAa1111AY.46.60.000794
ORF1ab/nsp62A2TGcaAca1111AY.470.000342
ORF1ab/nsp62A2AgcAgcG1011B.1.617.20.000038
ORF1ab/nsp62A2AgcAgcT111B.1.617.20.000004
ORF1ab/nsp62A2TGcaAca1010AY.1030.000062
ORF1ab/nsp62A2GgCagGa1010AY.46.60.000722
ORF1ab/nsp62A2VgCagTa1010AY.690.001867
ORF1ab/nsp62A2AgcAgcT810B.10.000073
ORF1ab/nsp62A2AgcAgcG210B.10.000018
ORF1ab/nsp62A2del1Gca-ca49All0.000001
ORF1ab/nsp62A2del1gcAgc-49All0.000001
ORF1ab/nsp62A2del1GCA-NN19All0
ORF1ab/nsp62A2VgCagTa99B.1.5310.75
ORF1ab/nsp62A2VgCagTa99P.1.140.00043
ORF1ab/nsp62A2VgCagTa99P.1.20.010405
ORF1ab/nsp62A2AgcAgcG88AY.750.000448
ORF1ab/nsp62A2AgcAgcC88B.1.438.10.000858
ORF1ab/nsp62A2SGcaTca88B.1.617.20.00003
ORF1ab/nsp62A2VgCagTa77AY.260.000198
ORF1ab/nsp62A2TGcaAca77B.1.2580.000466
ORF1ab/nsp62A2PGcaCca66All0.000001
ORF1ab/nsp62A2VgCagTa66AY.1010.002943
ORF1ab/nsp62A2TGcaAca66AY.1210.000812
ORF1ab/nsp62A2delGCA---66AY.40.000009
ORF1ab/nsp62A2AgcAgcT35AY.1030.000019
ORF1ab/nsp62A2AgcAgcG25AY.1030.000012
ORF1ab/nsp62A2EgCagAa55AY.40.000008
ORF1ab/nsp62A2VgCagTa55AY.4.50.000537
ORF1ab/nsp62A2SGcaTca55AY.430.000022
ORF1ab/nsp62A2TGcaAca55AY.50.000103
ORF1ab/nsp62A2VgCagTa55B.1.1.5190.000199
ORF1ab/nsp62A2VgCagTa55B.1.1600.000156
ORF1ab/nsp62A2VgCagTa55B.1.1770.000066
ORF1ab/nsp62A2VgCagTa55B.1.4270.000252
ORF1ab/nsp62A2VgCagTa55C.370.00058
ORF1ab/nsp62A2delGCA---440.222222
ORF1ab/nsp62A2SGcATcC240.111111
ORF1ab/nsp62A2SGcaTca240.111111
ORF1ab/nsp62A2VgCagTa240.111111
ORF1ab/nsp62A2VgCAgTC240.111111
ORF1ab/nsp62A2AgcAgcG44AY.30.00004
ORF1ab/nsp62A2VgCagTa44AY.320.00213
ORF1ab/nsp62A2VgCagTa44AY.330.000267
ORF1ab/nsp62A2VgCagTa44AY.98.10.000194
ORF1ab/nsp62A2VgCagTa44B.1.1.2530.010025
ORF1ab/nsp62A2EgCagAa44B.1.1.70.000004
ORF1ab/nsp62A2AgcAgcT44B.1.258.170.000416
ORF1ab/nsp62A2AgcAgcT44B.1.575.10.009756
ORF1ab/nsp62A2TGcaAca44B.1.617.20.000015
ORF1ab/nsp62A2VgCagTa24P.1.120.000968
ORF1ab/nsp62A2VgCAgTG24P.1.120.000968
ORF1ab/nsp62A2VgCagTa33AY.1020.00008
ORF1ab/nsp62A2VgCagTa33AY.1130.000427
ORF1ab/nsp62A2VgCagTa33AY.1190.000106
ORF1ab/nsp62A2VgCagTa33AY.230.000209
ORF1ab/nsp62A2SGcaTca33AY.40.000005
ORF1ab/nsp62A2AgcAgcG23AY.430.000009
ORF1ab/nsp62A2AgcAgcC13AY.430.000004
ORF1ab/nsp62A2AgcAgcG33AY.490.009585
ORF1ab/nsp62A2VgCagTa33AY.580.002722
ORF1ab/nsp62A2AgcAgcG33AY.670.001393
ORF1ab/nsp62A2SGcaTca33AY.840.001312
ORF1ab/nsp62A2VgCagTa33AY.9.20.00011
ORF1ab/nsp62A2VgCagTa33AY.950.002283
ORF1ab/nsp62A2EgCagAa33B.1.10.000054
ORF1ab/nsp62A2AgcAgcT33B.1.1.2800.009259
ORF1ab/nsp62A2VgCagTa33B.1.2340.000396
ORF1ab/nsp62A2VgCagTa33B.1.2400.000647
ORF1ab/nsp62A2VgCagTa33B.1.2430.000209
ORF1ab/nsp62A2AgcAgcT23B.1.3510.000059
ORF1ab/nsp62A2AgcAgcG13B.1.3510.00003
ORF1ab/nsp62A2VgCagTa33B.1.4060.018182
ORF1ab/nsp62A2VgCagTa33B.1.4290.000071
ORF1ab/nsp62A2VgCagTa33B.1.5960.000261
ORF1ab/nsp62A2delGCA---33B.1.617.20.000011
ORF1ab/nsp62A2VgCagTa23P.20.000373
ORF1ab/nsp62A2VgCAgTG13P.20.000187
ORF1ab/nsp62A2LGCaTTa220.111111
ORF1ab/nsp62A2FGCATTC220.111111
ORF1ab/nsp62A2AgcAgcC220.111111
ORF1ab/nsp62A2TGcaAca22A.210.00554
ORF1ab/nsp62A2FGCATTC22All0
ORF1ab/nsp62A2LGCaTTa22All0
ORF1ab/nsp62A2del2gCAg--12All0
ORF1ab/nsp62A2del2GCa--a12All0
ORF1ab/nsp62A2SGcaTca22AY.1000.000092
ORF1ab/nsp62A2VgCagTa22AY.1160.000574
ORF1ab/nsp62A2VgCagTa22AY.1200.000074
ORF1ab/nsp62A2SGcaTca22AY.200.000078
ORF1ab/nsp62A2delGCA---22AY.250.000012
ORF1ab/nsp62A2TGcaAca22AY.250.000012
ORF1ab/nsp62A2AgcAgcG12AY.250.000006
ORF1ab/nsp62A2AgcAgcT12AY.250.000006
ORF1ab/nsp62A2delGCA---22AY.290.000032
ORF1ab/nsp62A2VgCagTa22AY.340.000194
ORF1ab/nsp62A2AgcAgcT22AY.390.000049
ORF1ab/nsp62A2VgCagTa22AY.39.10.000079
ORF1ab/nsp62A2GgCagGa22AY.40.000003
ORF1ab/nsp62A2PGcaCca22AY.40.000003
ORF1ab/nsp62A2AgcAgcT22AY.46.10.002053
ORF1ab/nsp62A2VgCagTa22AY.750.000112
ORF1ab/nsp62A2AgcAgcG22AY.9.20.000073
ORF1ab/nsp62A2TGcaAca22AY.980.000158
ORF1ab/nsp62A2VgCagTa22AY.980.000158
ORF1ab/nsp62A2VgCagTa22B0.000256
ORF1ab/nsp62A2PGcaCca22B.10.000018
ORF1ab/nsp62A2EgCagAa22B.10.000018
ORF1ab/nsp62A2del1gcAgc-12B.10.000009
ORF1ab/nsp62A2del1Gca-ca12B.10.000009
ORF1ab/nsp62A2AgcAgcT22B.1.10.000036
ORF1ab/nsp62A2VgCagTa22B.1.1.1860.006873
ORF1ab/nsp62A2VgCagTa22B.1.1.2220.000408
ORF1ab/nsp62A2AgcAgcG22B.1.1.4200.002012
ORF1ab/nsp62A2VgCagTa22B.1.1.5180.012658
ORF1ab/nsp62A2AgcAgcT22B.1.1.5260.007092
ORF1ab/nsp62A2VgCagTa22B.1.1.530.027397
ORF1ab/nsp62A2del1Gca-ca12B.1.1.70.000001
ORF1ab/nsp62A2del1gcAgc-12B.1.1.70.000001
ORF1ab/nsp62A2SGcaTca22B.1.20.000018
ORF1ab/nsp62A2AgcAgcT12B.1.20.000009
ORF1ab/nsp62A2AgcAgcG12B.1.20.000009
ORF1ab/nsp62A2AgcAgcG22B.1.2210.000142
ORF1ab/nsp62A2VgCagTa22B.1.258.170.000208
ORF1ab/nsp62A2VgCagTa22B.1.2680.020833
ORF1ab/nsp62A2VgCagTa22B.1.360.000292
ORF1ab/nsp62A2AgcAgcG22B.1.4290.000047
ORF1ab/nsp62A2VgCagTa22B.1.4700.002809
ORF1ab/nsp62A2TGcaAca22B.1.5090.001732
ORF1ab/nsp62A2VgCagTa22B.1.6090.000959
ORF1ab/nsp62A2VgCagTa22B.1.617.10.000258
ORF1ab/nsp62A2AgcAgcG22P.1.120.000968
ORF1ab/nsp62A2VgCagTa22Q.80.00033
ORF1ab/nsp62A2TGcaAca22Q.80.00033
ORF1ab/nsp62A2VgCagTa11A0.000387
ORF1ab/nsp62A2VgCagTa11A.10.000282
ORF1ab/nsp62A2MGCAATG11All0
ORF1ab/nsp62A2CGCATGT11All0
ORF1ab/nsp62A2RGCACGT11All0
ORF1ab/nsp62A2AgcAgcG11AY.1000.000046
ORF1ab/nsp62A2VgCagTa11AY.1060.000335
ORF1ab/nsp62A2TGcaAca11AY.1110.000183
ORF1ab/nsp62A2TGcaAca11AY.1130.000142
ORF1ab/nsp62A2EgCagAa11AY.1170.000085
ORF1ab/nsp62A2VgCagTa11AY.1180.000063
ORF1ab/nsp62A2PGcaCca11AY.1200.000037
ORF1ab/nsp62A2SGcaTca11AY.130.000161
ORF1ab/nsp62A2AgcAgcG11AY.130.000161
ORF1ab/nsp62A2VgCagTa11AY.160.00038
ORF1ab/nsp62A2VgCagTa11AY.220.002092
ORF1ab/nsp62A2EgCagAa11AY.230.00007
ORF1ab/nsp62A2delGCA---11AY.30.00001
ORF1ab/nsp62A2EgCagAa11AY.330.000067
ORF1ab/nsp62A2TGcaAca11AY.360.000148
ORF1ab/nsp62A2EgCagAa11AY.390.000025
ORF1ab/nsp62A2del1Gca-ca11AY.40.000002
ORF1ab/nsp62A2TGcaAca11AY.4.20.000022
ORF1ab/nsp62A2del2GCa--a11AY.4.50.000107
ORF1ab/nsp62A2delGCA---11AY.4.50.000107
ORF1ab/nsp62A2RGCACGT11AY.430.000004
ORF1ab/nsp62A2delGCA---11AY.430.000004
ORF1ab/nsp62A2EgCagAa11AY.430.000004
ORF1ab/nsp62A2GgCagGa11AY.430.000004
ORF1ab/nsp62A2delGCA---11AY.440.000006
ORF1ab/nsp62A2AgcAgcG11AY.440.000006
ORF1ab/nsp62A2del1GCA-NN11AY.460.000104
ORF1ab/nsp62A2SGcaTca11AY.470.000031
ORF1ab/nsp62A2VgCagTa11AY.470.000031
ORF1ab/nsp62A2VgCagTa11AY.50.000021
ORF1ab/nsp62A2VgCagTa11AY.530.000288
ORF1ab/nsp62A2delGCA---11AY.540.000095
ORF1ab/nsp62A2AgcAgcG11AY.590.00053
ORF1ab/nsp62A2VgCagTa11AY.620.000436
ORF1ab/nsp62A2delGCA---11AY.660.00107
ORF1ab/nsp62A2AgcAgcG11AY.680.000274
ORF1ab/nsp62A2SGcaTca11AY.70.000196
ORF1ab/nsp62A2delGCA---11AY.720.001361
ORF1ab/nsp62A2TGcaAca11AY.750.000056
ORF1ab/nsp62A2VgCagTa11AY.780.001541
ORF1ab/nsp62A2CGCATGT11AY.790.001211
ORF1ab/nsp62A2AgcAgcG11AY.850.000427
ORF1ab/nsp62A2AgcAgcG11AY.920.000287
ORF1ab/nsp62A2EgCagAa11AY.960.002075
ORF1ab/nsp62A2SGcaTca11AY.980.000079
ORF1ab/nsp62A2AgcAgcG11AY.99.20.000092
ORF1ab/nsp62A2TGcaAca11B0.000128
ORF1ab/nsp62A2EgCagAa11B0.000128
ORF1ab/nsp62A2SGcaTca11B.10.000009
ORF1ab/nsp62A2TGcaAca11B.1.10.000018
ORF1ab/nsp62A2del1gcAgc-11B.1.10.000018
ORF1ab/nsp62A2delGCA---11B.1.10.000018
ORF1ab/nsp62A2VgCagTa11B.1.1.1410.002012
ORF1ab/nsp62A2delGCA---11B.1.1.1590.004673
ORF1ab/nsp62A2VgCagTa11B.1.1.1610.003534
ORF1ab/nsp62A2TGcaAca11B.1.1.1710.003676
ORF1ab/nsp62A2VgCagTa11B.1.1.2160.00089
ORF1ab/nsp62A2AgcAgcT11B.1.1.2220.000204
ORF1ab/nsp62A2VgCagTa11B.1.1.2940.001266
ORF1ab/nsp62A2SGcaTca11B.1.1.3060.000438
ORF1ab/nsp62A2VgCagTa11B.1.1.3060.000438
ORF1ab/nsp62A2delGCA---11B.1.1.3060.000438
ORF1ab/nsp62A2VgCagTa11B.1.1.3110.000358
ORF1ab/nsp62A2VgCagTa11B.1.1.3260.001761
ORF1ab/nsp62A2EgCagAa11B.1.1.3690.000446
ORF1ab/nsp62A2EgCagAa11B.1.1.3720.000689
ORF1ab/nsp62A2SGcaTca11B.1.1.3760.005952
ORF1ab/nsp62A2SGcaTca11B.1.1.3980.003226
ORF1ab/nsp62A2VgCagTa11B.1.1.4090.002833
ORF1ab/nsp62A2delGCA---11B.1.1.4090.002833
ORF1ab/nsp62A2VgCagTa11B.1.1.4160.000905
ORF1ab/nsp62A2VgCagTa11B.1.1.4340.000349
ORF1ab/nsp62A2AgcAgcG11B.1.1.5190.00004
ORF1ab/nsp62A2TGcaAca11B.1.1.5190.00004
ORF1ab/nsp62A2PGcaCca11B.1.1.70.000001
ORF1ab/nsp62A2TGcaAca11B.1.1280.000635
ORF1ab/nsp62A2AgcAgcC11B.1.1600.000031
ORF1ab/nsp62A2EgCagAa11B.1.1600.000031
ORF1ab/nsp62A2TGcaAca11B.1.1600.000031
ORF1ab/nsp62A2VgCagTa11B.1.160.290.004219
ORF1ab/nsp62A2VgCagTa11B.1.1640.014925
ORF1ab/nsp62A2TGcaAca11B.1.1770.000013
ORF1ab/nsp62A2delGCA---11B.1.1770.000013
ORF1ab/nsp62A2EgCagAa11B.1.1770.000013
ORF1ab/nsp62A2delGCA---11B.1.177.150.000631
ORF1ab/nsp62A2AgcAgcG11B.1.177.160.000664
ORF1ab/nsp62A2VgCagTa11B.1.177.190.001431
ORF1ab/nsp62A2SGcaTca11B.1.177.260.006993
ORF1ab/nsp62A2VgCagTa11B.1.177.350.000691
ORF1ab/nsp62A2SGcaTca11B.1.177.40.000211
ORF1ab/nsp62A2delGCA---11B.1.177.40.000211
ORF1ab/nsp62A2VgCagTa11B.1.177.560.000668
ORF1ab/nsp62A2AgcAgcT11B.1.177.60.000977
ORF1ab/nsp62A2delGCA---11B.1.177.630.002703
ORF1ab/nsp62A2AgcAgcG11B.1.177.650.000665
ORF1ab/nsp62A2SGcaTca11B.1.177.730.000566
ORF1ab/nsp62A2delGCA---11B.1.177.830.001481
ORF1ab/nsp62A2EgCagAa11B.1.20.000009
ORF1ab/nsp62A2del1gcAgc-11B.1.20.000009
ORF1ab/nsp62A2delGCA---11B.1.2100.002132
ORF1ab/nsp62A2VgCagTa11B.1.2140.003663
ORF1ab/nsp62A2VgCagTa11B.1.214.20.0006
ORF1ab/nsp62A2SGcaTca11B.1.2210.000071
ORF1ab/nsp62A2AgcAgcC11B.1.2230.002778
ORF1ab/nsp62A2VgCagTa11B.1.2360.002053
ORF1ab/nsp62A2VgCagTa11B.1.2580.000067
ORF1ab/nsp62A2VgCagTa11B.1.2600.003344
ORF1ab/nsp62A2VgCagTa11B.1.2790.000514
ORF1ab/nsp62A2del2gCAg--11B.1.3110.000275
ORF1ab/nsp62A2MGCAATG11B.1.3510.00003
ORF1ab/nsp62A2TGcaAca11B.1.36.170.000494
ORF1ab/nsp62A2SGcaTca11B.1.36.180.00042
ORF1ab/nsp62A2VgCagTa11B.1.36.270.000763
ORF1ab/nsp62A2AgcAgcT11B.1.36.290.000517
ORF1ab/nsp62A2VgCagTa11B.1.3670.000792
ORF1ab/nsp62A2AgcAgcT11B.1.3800.006623
ORF1ab/nsp62A2EgCagAa11B.1.3960.000706
ORF1ab/nsp62A2VgCagTa11B.1.4970.000315
ORF1ab/nsp62A2SGcaTca11B.1.5260.000024
ORF1ab/nsp62A2EgCagAa11B.1.5300.007143
ORF1ab/nsp62A2VgCagTa11B.1.5330.009615
ORF1ab/nsp62A2SGcaTca11B.1.5640.000426
ORF1ab/nsp62A2VgCagTa11B.1.5760.000907
ORF1ab/nsp62A2VgCagTa11B.1.5770.000687
ORF1ab/nsp62A2TGcaAca11B.1.5950.000261
ORF1ab/nsp62A2VgCagTa11B.1.5950.000261
ORF1ab/nsp62A2EgCagAa11B.1.617.20.000004
ORF1ab/nsp62A2VgCagTa11B.1.6210.000089
ORF1ab/nsp62A2VgCagTa11B.1.6230.000536
ORF1ab/nsp62A2SGcaTca11B.1.6250.002353
ORF1ab/nsp62A2VgCagTa11B.1.6360.006711
ORF1ab/nsp62A2del1Gca-ca11B.1.80.001972
ORF1ab/nsp62A2VgCagTa11B.1.930.000934
ORF1ab/nsp62A2AgcAgcT11B.3.10.001658
ORF1ab/nsp62A2AgcAgcG11B.60.00091
ORF1ab/nsp62A2VgCagTa11C.160.00106
ORF1ab/nsp62A2VgCagTa11D.20.000075
ORF1ab/nsp62A2VgCagTa11N.30.005814
ORF1ab/nsp62A2delGCA---11N.40.004255
ORF1ab/nsp62A2EgCagAa11P.10.000016
ORF1ab/nsp62A2TGcaAca11P.10.000016
ORF1ab/nsp62A2AgcAgcT11P.1.70.000319
ORF1ab/nsp62A2AgcAgcG11P.20.000187
ORF1ab/nsp62A2AgcAgcT11P.30.001595
ORF1ab/nsp62A2delGCA---11Q.10.000126
ORF1ab/nsp62A2TGcaAca11Q.10.000126
ORF1ab/nsp62A2AgcAgcG11Q.30.000145
ORF1ab/nsp62A2delGCA---11Q.80.000165
ORF1ab/nsp62A2AgcAgcG11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.