CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 197 | C197F | C3766F | nonsyn | tGc | tTc | 77989 | 77973 | 0.999795 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197F | C3766F | nonsyn | tGC | tTT | 77989 | 16 | 0.000205157 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197C | C3766C | syn | tgC | tgT | 4542 | 4542 | 1 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197S | C3766S | nonsyn | Tgc | Agc | 197 | 142 | 0.720812 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197S | C3766S | nonsyn | tGC | tCA | 197 | 30 | 0.152284 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197S | C3766S | nonsyn | tGc | tCc | 197 | 23 | 0.116751 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197S | C3766S | nonsyn | TgC | AgT | 197 | 2 | 0.0101523 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197Y | C3766Y | nonsyn | tGc | tAc | 176 | 176 | 1 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197R | C3766R | nonsyn | Tgc | Cgc | 96 | 95 | 0.989583 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197R | C3766R | nonsyn | TgC | AgA | 96 | 1 | 0.0104167 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197G | C3766G | nonsyn | Tgc | Ggc | 67 | 65 | 0.970149 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197G | C3766G | nonsyn | TgC | GgG | 67 | 1 | 0.0149254 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197G | C3766G | nonsyn | TgC | GgT | 67 | 1 | 0.0149254 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197del | C3766del | del | TGC | --- | 57 | 57 | 1 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197W | C3766W | nonsyn | tgC | tgG | 14 | 14 | 1 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197X | C3766X | nonsyn | tgC | tgA | 9 | 6 | 0.666667 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197X | C3766X | nonsyn | tGC | tAA | 9 | 2 | 0.222222 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197X | C3766X | nonsyn | tGC | tAG | 9 | 1 | 0.111111 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197L | C3766L | nonsyn | tGC | tTG | 7 | 4 | 0.571429 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197L | C3766L | nonsyn | tGC | tTA | 7 | 3 | 0.428571 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197I | C3766I | nonsyn | TGc | ATc | 5 | 3 | 0.6 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197I | C3766I | nonsyn | TGC | ATT | 5 | 2 | 0.4 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197V | C3766V | nonsyn | TGc | GTc | 5 | 2 | 0.4 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197V | C3766V | nonsyn | TGC | GTG | 5 | 1 | 0.2 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197V | C3766V | nonsyn | TGC | GTA | 5 | 1 | 0.2 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197V | C3766V | nonsyn | TGC | GTT | 5 | 1 | 0.2 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197del1 | C3766del1 | del | tgC | tg- | 4 | 2 | 0.5 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197del1 | C3766del1 | del | TgC | -gM | 4 | 2 | 0.5 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197P | C3766P | nonsyn | TGc | CCc | 2 | 2 | 1 | 11561-11563 |
ORF1ab/nsp6 | 197 | C197del2 | C3766del2 | del | tGC | t-- | 1 | 1 | 1 | 11561-11563 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 77973 | 77989 | All | 0.014913 |
ORF1ab/nsp6 | 197 | C197F | tGC | tTT | 16 | 77989 | All | 0.000003 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 70760 | 70771 | AY.25 | 0.425609 |
ORF1ab/nsp6 | 197 | C197F | tGC | tTT | 11 | 70771 | AY.25 | 0.000066 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 4961 | 4961 | AY.4 | 0.007721 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4542 | 4542 | All | 0.000869 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1096 | 1096 | AY.39 | 0.027084 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1021 | 1021 | B.1.617.2 | 0.003844 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 579 | 579 | B.1.617.2 | 0.00218 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 398 | 398 | AY.3.1 | 0.033933 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 355 | 355 | B.1.1.7 | 0.000318 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 224 | 224 | AY.113 | 0.031895 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 222 | 222 | B.1.160.24 | 0.982301 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 142 | 197 | All | 0.000027 |
ORF1ab/nsp6 | 197 | C197S | tGC | tCA | 30 | 197 | All | 0.000006 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 23 | 197 | All | 0.000004 |
ORF1ab/nsp6 | 197 | C197S | TgC | AgT | 2 | 197 | All | 0 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 182 | 182 | AY.39 | 0.004497 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 177 | 177 | AY.4 | 0.000275 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 176 | 176 | All | 0.000034 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 98 | 98 | AY.4 | 0.000153 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 95 | 96 | All | 0.000018 |
ORF1ab/nsp6 | 197 | C197R | TgC | AgA | 1 | 96 | All | 0 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 94 | 94 | AY.54 | 0.008963 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 91 | 91 | B.1.2 | 0.000801 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 86 | 86 | AY.103 | 0.000534 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 86 | 86 | AY.43 | 0.000381 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 82 | 82 | AY.44 | 0.000499 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 82 | 82 | B.1.36 | 0.011964 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 78 | 78 | AY.120 | 0.0029 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 72 | 72 | B.1.526 | 0.001692 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 65 | 67 | All | 0.000012 |
ORF1ab/nsp6 | 197 | C197G | TgC | GgG | 1 | 67 | All | 0 |
ORF1ab/nsp6 | 197 | C197G | TgC | GgT | 1 | 67 | All | 0 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 64 | 64 | B.1.1 | 0.001161 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 57 | 57 | All | 0.000011 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 57 | 57 | B.1.161 | 0.982759 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 52 | 52 | AY.44 | 0.000317 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 51 | 51 | B.1.427 | 0.002575 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 44 | 44 | R.1 | 0.00396 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 43 | 43 | B.1 | 0.000394 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 42 | 42 | AY.51 | 0.038182 |
ORF1ab/nsp6 | 197 | C197S | tGC | tCA | 22 | 41 | B.1.1.7 | 0.00002 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 18 | 41 | B.1.1.7 | 0.000016 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 41 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 40 | 40 | AY.3 | 0.000398 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 37 | 37 | AY.47 | 0.001151 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 37 | 37 | AY.92 | 0.010629 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 35 | 35 | AY.43 | 0.000155 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 33 | 33 | AY.29 | 0.000521 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 30 | 30 | C.37 | 0.003482 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 29 | 29 | AY.100 | 0.001334 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 29 | 29 | AY.103 | 0.00018 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 29 | 29 | P.1 | 0.000457 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 28 | 28 | AY.102 | 0.000742 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 28 | 28 | AY.117 | 0.002366 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 27 | 27 | AY.23 | 0.001883 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 26 | 26 | AY.47 | 0.000809 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 26 | 26 | B.1.177.81 | 0.004922 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 25 | 26 | B.1.617.2 | 0.000094 |
ORF1ab/nsp6 | 197 | C197R | TgC | AgA | 1 | 26 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 25 | 25 | AY.119 | 0.000883 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 25 | 25 | B.1.1.519 | 0.000993 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 25 | 25 | B.1.177.73 | 0.014156 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 21 | 21 | AY.46.6 | 0.001516 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 20 | 20 | AY.39.1 | 0.000792 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 20 | 20 | AY.46 | 0.002082 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 20 | 20 | B.1.1.415 | 1 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 19 | 19 | AY.42 | 0.000764 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 19 | 19 | AY.5 | 0.000392 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 19 | 19 | B.1 | 0.000174 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 18 | 18 | AY.117 | 0.001521 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 17 | 17 | AY.98 | 0.001343 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 17 | 17 | B.1.232 | 0.009135 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 17 | 17 | B.1.258.17 | 0.001768 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 17 | 17 | B.1.575 | 0.005158 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 16 | 16 | AY.41 | 0.004703 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 15 | 15 | B.1.400 | 0.006435 |
ORF1ab/nsp6 | 197 | C197W | tgC | tgG | 14 | 14 | All | 0.000003 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 14 | 14 | AY.117 | 0.001183 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 14 | 14 | AY.98 | 0.001106 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 14 | 14 | AY.99 | 0.01469 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 14 | 14 | B | 0.001789 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 14 | 14 | B.1.427 | 0.000707 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 13 | 13 | AY.102 | 0.000345 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 13 | 13 | B.1.456 | 0.042484 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 8 | 12 | AY.4 | 0.000012 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 3 | 12 | AY.4 | 0.000005 |
ORF1ab/nsp6 | 197 | C197S | tGC | tCA | 1 | 12 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 12 | 12 | B.1.391 | 0.013529 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 11 | 11 | AY.26 | 0.000311 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 11 | 11 | AY.45 | 0.001339 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 11 | 11 | AY.79 | 0.013317 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 10 | 10 | AY.94 | 0.004427 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 5 | 9 | 0.277778 | |
ORF1ab/nsp6 | 197 | C197F | tGC | tTT | 4 | 9 | 0.222222 | |
ORF1ab/nsp6 | 197 | C197X | tgC | tgA | 6 | 9 | All | 0.000001 |
ORF1ab/nsp6 | 197 | C197X | tGC | tAA | 2 | 9 | All | 0 |
ORF1ab/nsp6 | 197 | C197X | tGC | tAG | 1 | 9 | All | 0 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp6 | 197 | C197W | tgC | tgG | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 9 | 9 | AY.4.2 | 0.000195 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 8 | 8 | AY.116 | 0.002294 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 8 | 8 | AY.16 | 0.003037 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 6 | 8 | AY.43 | 0.000027 |
ORF1ab/nsp6 | 197 | C197S | tGC | tCA | 1 | 8 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 8 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 8 | 8 | AY.46.4 | 0.001316 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 8 | 8 | B.1.177.7 | 0.001319 |
ORF1ab/nsp6 | 197 | C197L | tGC | tTG | 4 | 7 | All | 0.000001 |
ORF1ab/nsp6 | 197 | C197L | tGC | tTA | 3 | 7 | All | 0.000001 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 7 | 7 | AY.12 | 0.002212 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 7 | 7 | B.1.177.60 | 0.001529 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 6 | 6 | AY.109 | 0.004438 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 6 | 6 | AY.51 | 0.005455 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 6 | 6 | AY.68 | 0.001642 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 6 | 6 | AY.82 | 0.008141 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 5 | 5 | A.2.5 | 0.002495 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 5 | 5 | A.27 | 0.008278 |
ORF1ab/nsp6 | 197 | C197I | TGc | ATc | 3 | 5 | All | 0.000001 |
ORF1ab/nsp6 | 197 | C197I | TGC | ATT | 2 | 5 | All | 0 |
ORF1ab/nsp6 | 197 | C197V | TGc | GTc | 2 | 5 | All | 0 |
ORF1ab/nsp6 | 197 | C197V | TGC | GTA | 1 | 5 | All | 0 |
ORF1ab/nsp6 | 197 | C197V | TGC | GTG | 1 | 5 | All | 0 |
ORF1ab/nsp6 | 197 | C197V | TGC | GTT | 1 | 5 | All | 0 |
ORF1ab/nsp6 | 197 | C197S | tGC | tCA | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 5 | 5 | AY.7 | 0.00098 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 3 | 5 | B.1 | 0.000027 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 2 | 5 | B.1 | 0.000018 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 5 | 5 | B.1.1.416 | 0.004525 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 5 | 5 | B.1.561 | 0.001985 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 5 | 5 | B.40 | 0.001821 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | 0.222222 | |
ORF1ab/nsp6 | 197 | C197I | TGc | ATc | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 197 | C197I | TGC | ATT | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 197 | C197S | TgC | AgT | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | A.23.1 | 0.002817 |
ORF1ab/nsp6 | 197 | C197del1 | TgC | -gM | 2 | 4 | All | 0 |
ORF1ab/nsp6 | 197 | C197del1 | tgC | tg- | 2 | 4 | All | 0 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | AY.107 | 0.001864 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 4 | 4 | AY.108 | 0.00441 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | AY.120.1 | 0.001284 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 4 | 4 | AY.67 | 0.001857 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | B.1.1.311 | 0.001433 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | B.1.1.420 | 0.004024 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 4 | 4 | B.1.177.60 | 0.000874 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | B.1.433 | 0.01278 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 3 | 4 | D.2 | 0.000225 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 4 | D.2 | 0.000075 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 4 | 4 | Q.2 | 0.002454 |
ORF1ab/nsp6 | 197 | C197V | TGC | GTT | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 197 | C197V | TGc | GTc | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 197 | C197V | TGC | GTG | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 197 | C197G | TgC | GgG | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 197 | C197G | TgC | GgT | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 3 | 3 | AY.46.1 | 0.00308 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | AY.46.5 | 0.000595 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp6 | 197 | C197X | tgC | tgA | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 197 | C197X | tGC | tAA | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | B.1.14 | 0.052632 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 3 | B.1.221 | 0.000142 |
ORF1ab/nsp6 | 197 | C197F | tGC | tTT | 1 | 3 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp6 | 197 | C197W | tgC | tgG | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 197 | C197L | tGC | tTG | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp6 | 197 | C197P | TGc | CCc | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AY.17 | 0.016393 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp6 | 197 | C197L | tGC | tTA | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | AY.81 | 0.003984 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp6 | 197 | C197P | TGc | CCc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.169 | 0.029851 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.258.2 | 0.009009 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.403 | 0.006536 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 197 | C197S | tGC | tCA | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | B.1.523 | 0.004902 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | C.23 | 0.011628 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 197 | C197X | tGC | tAG | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp6 | 197 | C197del2 | tGC | t-- | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 197 | C197del1 | tgC | tg- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp6 | 197 | C197L | tGC | tTG | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 197 | C197X | tgC | tgA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 197 | C197V | TGc | GTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp6 | 197 | C197X | tgC | tgA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp6 | 197 | C197V | TGC | GTA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 197 | C197X | tgC | tgA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp6 | 197 | C197del1 | TgC | -gM | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 197 | C197del1 | TgC | -gM | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 197 | C197X | tGC | tAA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 197 | C197L | tGC | tTA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | B.1.1.3 | 0.008696 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.339 | 0.010526 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | B.1.1.359 | 0.027778 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp6 | 197 | C197W | tgC | tgG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 197 | C197del2 | tGC | t-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 197 | C197I | TGc | ATc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 197 | C197del1 | tgC | tg- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp6 | 197 | C197W | tgC | tgG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 197 | C197L | tGC | tTG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | B.1.258.2 | 0.004505 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | B.1.323 | 0.020833 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp6 | 197 | C197S | Tgc | Agc | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 197 | C197R | Tgc | Cgc | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | B.53 | 0.011765 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 197 | C197X | tgC | tgA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 197 | C197W | tgC | tgG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 197 | C197S | tGc | tCc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 197 | C197C | tgC | tgT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp6 | 197 | C197F | tGc | tTc | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp6 | 197 | C197del | TGC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp6 | 197 | C197Y | tGc | tAc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp6 | 197 | C197G | Tgc | Ggc | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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