CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 192 | M192V | M3761V | nonsyn | Atg | Gtg | 1137 | 1137 | 1 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192I | M3761I | nonsyn | atG | atT | 599 | 429 | 0.716194 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192I | M3761I | nonsyn | atG | atA | 599 | 166 | 0.277129 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192I | M3761I | nonsyn | atG | atC | 599 | 4 | 0.0066778 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192T | M3761T | nonsyn | aTg | aCg | 461 | 459 | 0.995662 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192T | M3761T | nonsyn | aTG | aCC | 461 | 1 | 0.0021692 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192T | M3761T | nonsyn | aTG | aCA | 461 | 1 | 0.0021692 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192L | M3761L | nonsyn | Atg | Ttg | 152 | 141 | 0.927632 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192L | M3761L | nonsyn | AtG | TtA | 152 | 10 | 0.0657895 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192L | M3761L | nonsyn | Atg | Ctg | 152 | 1 | 0.00657895 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192del | M3761del | del | ATG | --- | 85 | 85 | 1 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192R | M3761R | nonsyn | aTg | aGg | 22 | 20 | 0.909091 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192R | M3761R | nonsyn | aTG | aGA | 22 | 2 | 0.0909091 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192K | M3761K | nonsyn | aTg | aAg | 15 | 15 | 1 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192del2 | M3761del2 | del | aTG | a-- | 6 | 4 | 0.666667 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192del2 | M3761del2 | del | ATg | --g | 6 | 2 | 0.333333 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192F | M3761F | nonsyn | AtG | TtT | 5 | 5 | 1 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192S | M3761S | nonsyn | aTG | aGC | 3 | 2 | 0.666667 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192Y | M3761Y | nonsyn | ATG | TAC | 3 | 2 | 0.666667 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192S | M3761S | nonsyn | aTG | aGT | 3 | 1 | 0.333333 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192Y | M3761Y | nonsyn | ATG | TAT | 3 | 1 | 0.333333 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192del1 | M3761del1 | del | Atg | -tg | 2 | 2 | 1 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192G | M3761G | nonsyn | ATG | GGA | 2 | 2 | 1 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192A | M3761A | nonsyn | ATG | GCA | 2 | 1 | 0.5 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192A | M3761A | nonsyn | ATg | GCg | 2 | 1 | 0.5 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192X | M3761X | nonsyn | ATg | TAg | 1 | 1 | 1 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192C | M3761C | nonsyn | ATG | TGT | 1 | 1 | 1 | 11546-11548 |
ORF1ab/nsp6 | 192 | M192N | M3761N | nonsyn | aTG | aAT | 1 | 1 | 1 | 11546-11548 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1137 | 1137 | All | 0.000217 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 429 | 599 | All | 0.000082 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 166 | 599 | All | 0.000032 |
ORF1ab/nsp6 | 192 | M192I | atG | atC | 4 | 599 | All | 0.000001 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 459 | 461 | All | 0.000088 |
ORF1ab/nsp6 | 192 | M192T | aTG | aCA | 1 | 461 | All | 0 |
ORF1ab/nsp6 | 192 | M192T | aTG | aCC | 1 | 461 | All | 0 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 446 | 446 | B.1.1.7 | 0.000399 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 234 | 234 | AD.1 | 0.962963 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 220 | 220 | AY.47 | 0.006843 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 212 | 212 | AY.46 | 0.022065 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 141 | 152 | All | 0.000027 |
ORF1ab/nsp6 | 192 | M192L | AtG | TtA | 10 | 152 | All | 0.000002 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ctg | 1 | 152 | All | 0 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 111 | 111 | B.1.1.7 | 0.000099 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 109 | 109 | B.1.617.2 | 0.00041 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 95 | 95 | B.1.351.2 | 0.028744 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 86 | 86 | B.1.427 | 0.004343 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 85 | 85 | All | 0.000016 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 30 | 52 | B.1.1.7 | 0.000027 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 22 | 52 | B.1.1.7 | 0.00002 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 52 | 52 | P.1.10 | 0.014012 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 32 | 43 | AY.4.2 | 0.000694 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 11 | 43 | AY.4.2 | 0.000239 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 42 | 42 | AY.4 | 0.000065 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 38 | 38 | B.1.1.219 | 0.19 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 37 | 37 | B.1.177.43 | 0.054653 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 33 | 33 | AY.44 | 0.000201 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 23 | 23 | AY.43 | 0.000102 |
ORF1ab/nsp6 | 192 | M192R | aTg | aGg | 20 | 22 | All | 0.000004 |
ORF1ab/nsp6 | 192 | M192R | aTG | aGA | 2 | 22 | All | 0 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 11 | 19 | AY.4 | 0.000017 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 8 | 19 | AY.4 | 0.000012 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 19 | 19 | B.1.110.3 | 0.013649 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 17 | 18 | AY.43 | 0.000075 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 18 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 15 | 16 | AY.103 | 0.000093 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 16 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp6 | 192 | M192K | aTg | aAg | 15 | 15 | All | 0.000003 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 15 | 15 | AY.3.1 | 0.001279 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp6 | 192 | M192R | aTg | aGg | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 8 | 11 | B.1.617.2 | 0.00003 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 2 | 11 | B.1.617.2 | 0.000008 |
ORF1ab/nsp6 | 192 | M192I | atG | atC | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 9 | 10 | B.1 | 0.000082 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 10 | B.1 | 0.000009 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 8 | 9 | B.1 | 0.000073 |
ORF1ab/nsp6 | 192 | M192T | aTG | aCA | 1 | 9 | B.1 | 0.000009 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp6 | 192 | M192L | AtG | TtA | 9 | 9 | B.1.36.29 | 0.004656 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 8 | 8 | AY.8 | 0.004848 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 8 | 8 | B.1.1.284 | 0.000859 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 8 | 8 | B.1.628 | 0.002819 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 7 | 7 | B.1.1.191 | 0.033333 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp6 | 192 | M192del2 | aTG | a-- | 4 | 6 | All | 0.000001 |
ORF1ab/nsp6 | 192 | M192del2 | ATg | --g | 2 | 6 | All | 0 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 6 | 6 | B.1.1.306 | 0.00263 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 3 | 6 | B.1.2 | 0.000026 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 3 | 6 | B.1.2 | 0.000026 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 3 | 5 | 0.166667 | |
ORF1ab/nsp6 | 192 | M192I | atG | atC | 2 | 5 | 0.111111 | |
ORF1ab/nsp6 | 192 | M192F | AtG | TtT | 5 | 5 | All | 0.000001 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 3 | 5 | AY.44 | 0.000018 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 2 | 5 | AY.44 | 0.000012 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 5 | 5 | B.1.1.297 | 0.011186 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 3 | 5 | B.1.177 | 0.00004 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 2 | 5 | B.1.177 | 0.000026 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 3 | 4 | AY.100 | 0.000138 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 4 | AY.100 | 0.000046 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 3 | 4 | AY.4 | 0.000005 |
ORF1ab/nsp6 | 192 | M192L | AtG | TtA | 1 | 4 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 2 | 4 | AY.9.2 | 0.000073 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 2 | 4 | AY.9.2 | 0.000073 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 3 | 4 | B.1.427 | 0.000151 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 4 | B.1.427 | 0.00005 |
ORF1ab/nsp6 | 192 | M192Y | ATG | TAC | 2 | 3 | 0.111111 | |
ORF1ab/nsp6 | 192 | M192Y | ATG | TAT | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 192 | M192S | aTG | aGC | 2 | 3 | All | 0 |
ORF1ab/nsp6 | 192 | M192Y | ATG | TAC | 2 | 3 | All | 0 |
ORF1ab/nsp6 | 192 | M192S | aTG | aGT | 1 | 3 | All | 0 |
ORF1ab/nsp6 | 192 | M192Y | ATG | TAT | 1 | 3 | All | 0 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 2 | 3 | AY.102 | 0.000053 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 3 | AY.102 | 0.000027 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 3 | 3 | AY.40 | 0.002893 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp6 | 192 | M192T | aTG | aCC | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 3 | 3 | B.1.1.371 | 0.03125 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp6 | 192 | M192K | aTg | aAg | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp6 | 192 | M192F | AtG | TtT | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 192 | M192S | aTG | aGC | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 192 | M192R | aTg | aGg | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 192 | M192G | ATG | GGA | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 192 | M192del1 | Atg | -tg | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 192 | M192A | ATg | GCg | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 192 | M192A | ATG | GCA | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp6 | 192 | M192K | aTg | aAg | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp6 | 192 | M192R | aTg | aGg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp6 | 192 | M192del2 | aTG | a-- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp6 | 192 | M192R | aTG | aGA | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 192 | M192R | aTg | aGg | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 2 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 2 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 2 | Q.1 | 0.000126 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 2 | Q.1 | 0.000126 |
ORF1ab/nsp6 | 192 | M192X | ATg | TAg | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 192 | M192K | aTg | aAg | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 192 | M192N | aTG | aAT | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp6 | 192 | M192X | ATg | TAg | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 192 | M192N | aTG | aAT | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 192 | M192C | ATG | TGT | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 192 | M192K | aTg | aAg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 192 | M192K | aTg | aAg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ctg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 192 | M192K | aTg | aAg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 192 | M192R | aTg | aGg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 192 | M192C | ATG | TGT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp6 | 192 | M192del2 | aTG | a-- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp6 | 192 | M192K | aTg | aAg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 192 | M192R | aTg | aGg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 192 | M192K | aTg | aAg | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 192 | M192S | aTG | aGT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 192 | M192del2 | aTG | a-- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 192 | M192A | ATG | GCA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 192 | M192K | aTg | aAg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 192 | M192G | ATG | GGA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 192 | M192R | aTG | aGA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 192 | M192F | AtG | TtT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp6 | 192 | M192del2 | ATg | --g | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp6 | 192 | M192F | AtG | TtT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 192 | M192R | aTg | aGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 192 | M192del1 | Atg | -tg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp6 | 192 | M192del1 | Atg | -tg | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp6 | 192 | M192del2 | ATg | --g | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp6 | 192 | M192A | ATg | GCg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 192 | M192F | AtG | TtT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp6 | 192 | M192I | atG | atC | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp6 | 192 | M192K | aTg | aAg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 192 | M192G | ATG | GGA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp6 | 192 | M192K | aTg | aAg | 1 | 1 | B.6.3 | 0.026316 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp6 | 192 | M192L | Atg | Ttg | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 192 | M192T | aTg | aCg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 192 | M192del | ATG | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 192 | M192K | aTg | aAg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp6 | 192 | M192I | atG | atA | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp6 | 192 | M192I | atG | atT | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp6 | 192 | M192V | Atg | Gtg | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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