CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 19 | L19F | L3588F | nonsyn | ttG | ttT | 1019 | 1009 | 0.990186 | 11027-11029 |
ORF1ab/nsp6 | 19 | L19F | L3588F | nonsyn | ttG | ttC | 1019 | 10 | 0.00981354 | 11027-11029 |
ORF1ab/nsp6 | 19 | L19L | L3588L | syn | ttG | ttA | 319 | 278 | 0.871473 | 11027-11029 |
ORF1ab/nsp6 | 19 | L19L | L3588L | syn | Ttg | Ctg | 319 | 39 | 0.122257 | 11027-11029 |
ORF1ab/nsp6 | 19 | L19L | L3588L | syn | TtG | CtT | 319 | 1 | 0.0031348 | 11027-11029 |
ORF1ab/nsp6 | 19 | L19L | L3588L | syn | TtG | CtC | 319 | 1 | 0.0031348 | 11027-11029 |
ORF1ab/nsp6 | 19 | L19S | L3588S | nonsyn | tTg | tCg | 65 | 65 | 1 | 11027-11029 |
ORF1ab/nsp6 | 19 | L19del | L3588del | del | TTG | --- | 23 | 23 | 1 | 11027-11029 |
ORF1ab/nsp6 | 19 | L19M | L3588M | nonsyn | Ttg | Atg | 3 | 3 | 1 | 11027-11029 |
ORF1ab/nsp6 | 19 | L19V | L3588V | nonsyn | Ttg | Gtg | 3 | 3 | 1 | 11027-11029 |
ORF1ab/nsp6 | 19 | L19P | L3588P | nonsyn | TTg | CCg | 1 | 1 | 1 | 11027-11029 |
ORF1ab/nsp6 | 19 | L19X | L3588X | nonsyn | tTG | tGA | 1 | 1 | 1 | 11027-11029 |
ORF1ab/nsp6 | 19 | L19Q | L3588Q | nonsyn | TTg | CAg | 1 | 1 | 1 | 11027-11029 |
ORF1ab/nsp6 | 19 | L19W | L3588W | nonsyn | tTg | tGg | 1 | 1 | 1 | 11027-11029 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1009 | 1019 | All | 0.000193 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttC | 10 | 1019 | All | 0.000002 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 278 | 319 | All | 0.000053 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 39 | 319 | All | 0.000007 |
ORF1ab/nsp6 | 19 | L19L | TtG | CtC | 1 | 319 | All | 0 |
ORF1ab/nsp6 | 19 | L19L | TtG | CtT | 1 | 319 | All | 0 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 142 | 144 | B.1.1.7 | 0.000127 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttC | 2 | 144 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 126 | 126 | B.1.1.163 | 0.961832 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 124 | 124 | AY.42 | 0.004989 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 115 | 115 | B.1.525 | 0.013013 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 79 | 79 | P.1 | 0.001245 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 65 | 65 | All | 0.000012 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 64 | 64 | AY.4 | 0.0001 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 40 | 42 | B.1.617.2 | 0.000151 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttC | 2 | 42 | B.1.617.2 | 0.000008 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 34 | 41 | B.1.1.7 | 0.00003 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 7 | 41 | B.1.1.7 | 0.000006 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 36 | 36 | AY.9 | 0.002433 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 31 | 31 | AY.44 | 0.000189 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 28 | 28 | AY.4.5 | 0.00301 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 27 | 27 | B.1.1.265 | 0.085174 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 24 | 25 | AY.103 | 0.000149 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttC | 1 | 25 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 25 | 25 | AY.43 | 0.000111 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 23 | 23 | All | 0.000004 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 21 | 21 | AY.27 | 0.001359 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 18 | 18 | B.1.351 | 0.000535 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 17 | 17 | B.1 | 0.000156 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 14 | 15 | AY.102 | 0.000371 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttC | 1 | 15 | AY.102 | 0.000027 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 12 | 12 | D.3 | 0.071006 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 11 | 11 | AY.121 | 0.001488 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 10 | 11 | AY.33 | 0.000668 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 11 | AY.33 | 0.000067 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 11 | 11 | B.1.36.36 | 0.006623 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 11 | 11 | P.1.12 | 0.005324 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 9 | 9 | AY.69 | 0.00168 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 9 | 9 | AY.98 | 0.000711 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 8 | 9 | B.1 | 0.000073 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 1 | 9 | B.1 | 0.000009 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 5 | 6 | AY.119 | 0.000177 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 1 | 6 | AY.119 | 0.000035 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 4 | 5 | AY.23 | 0.000279 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttC | 1 | 5 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 4 | 5 | B.1.1 | 0.000073 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 5 | 5 | B.1.146 | 0.021186 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 3 | 4 | D.2 | 0.000225 |
ORF1ab/nsp6 | 19 | L19L | TtG | CtT | 1 | 4 | D.2 | 0.000075 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 3 | 3 | 0.166667 | |
ORF1ab/nsp6 | 19 | L19M | Ttg | Atg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp6 | 19 | L19V | Ttg | Gtg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 3 | 3 | B.1.1.413 | 0.02069 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 19 | L19L | TtG | CtC | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttC | 1 | 2 | B.1.1.25 | 0.000569 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 2 | B.1.1.25 | 0.000569 |
ORF1ab/nsp6 | 19 | L19V | Ttg | Gtg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | B.1.1.71 | 0.012121 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 2 | B.1.13 | 0.002375 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 1 | 2 | B.1.13 | 0.002375 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp6 | 19 | L19M | Ttg | Atg | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 19 | L19P | TTg | CCg | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 19 | L19X | tTG | tGA | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 19 | L19Q | TTg | CAg | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 19 | L19W | tTg | tGg | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp6 | 19 | L19W | tTg | tGg | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 19 | L19V | Ttg | Gtg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 19 | L19M | Ttg | Atg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp6 | 19 | L19M | Ttg | Atg | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 19 | L19Q | TTg | CAg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 19 | L19P | TTg | CCg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | B.1.1.123 | 0.017857 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttC | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttC | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp6 | 19 | L19L | Ttg | Ctg | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp6 | 19 | L19S | tTg | tCg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 19 | L19X | tTG | tGA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp6 | 19 | L19L | ttG | ttA | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp6 | 19 | L19del | TTG | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp6 | 19 | L19F | ttG | ttT | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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