CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 19

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp619L19FL3588FnonsynttGttT101910090.99018611027-11029
ORF1ab/nsp619L19FL3588FnonsynttGttC1019100.0098135411027-11029
ORF1ab/nsp619L19LL3588LsynttGttA3192780.87147311027-11029
ORF1ab/nsp619L19LL3588LsynTtgCtg319390.12225711027-11029
ORF1ab/nsp619L19LL3588LsynTtGCtT31910.003134811027-11029
ORF1ab/nsp619L19LL3588LsynTtGCtC31910.003134811027-11029
ORF1ab/nsp619L19SL3588SnonsyntTgtCg6565111027-11029
ORF1ab/nsp619L19delL3588deldelTTG---2323111027-11029
ORF1ab/nsp619L19ML3588MnonsynTtgAtg33111027-11029
ORF1ab/nsp619L19VL3588VnonsynTtgGtg33111027-11029
ORF1ab/nsp619L19PL3588PnonsynTTgCCg11111027-11029
ORF1ab/nsp619L19XL3588XnonsyntTGtGA11111027-11029
ORF1ab/nsp619L19QL3588QnonsynTTgCAg11111027-11029
ORF1ab/nsp619L19WL3588WnonsyntTgtGg11111027-11029

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp619L19FttGttT10091019All0.000193
ORF1ab/nsp619L19FttGttC101019All0.000002
ORF1ab/nsp619L19LttGttA278319All0.000053
ORF1ab/nsp619L19LTtgCtg39319All0.000007
ORF1ab/nsp619L19LTtGCtC1319All0
ORF1ab/nsp619L19LTtGCtT1319All0
ORF1ab/nsp619L19FttGttT142144B.1.1.70.000127
ORF1ab/nsp619L19FttGttC2144B.1.1.70.000002
ORF1ab/nsp619L19LttGttA126126B.1.1.1630.961832
ORF1ab/nsp619L19FttGttT124124AY.420.004989
ORF1ab/nsp619L19FttGttT115115B.1.5250.013013
ORF1ab/nsp619L19FttGttT7979P.10.001245
ORF1ab/nsp619L19StTgtCg6565All0.000012
ORF1ab/nsp619L19FttGttT6464AY.40.0001
ORF1ab/nsp619L19FttGttT4042B.1.617.20.000151
ORF1ab/nsp619L19FttGttC242B.1.617.20.000008
ORF1ab/nsp619L19LttGttA3441B.1.1.70.00003
ORF1ab/nsp619L19LTtgCtg741B.1.1.70.000006
ORF1ab/nsp619L19FttGttT3636AY.90.002433
ORF1ab/nsp619L19FttGttT3131AY.440.000189
ORF1ab/nsp619L19FttGttT2828AY.4.50.00301
ORF1ab/nsp619L19StTgtCg2727B.1.1.2650.085174
ORF1ab/nsp619L19FttGttT2425AY.1030.000149
ORF1ab/nsp619L19FttGttC125AY.1030.000006
ORF1ab/nsp619L19FttGttT2525AY.430.000111
ORF1ab/nsp619L19delTTG---2323All0.000004
ORF1ab/nsp619L19FttGttT2121AY.270.001359
ORF1ab/nsp619L19LttGttA1818AY.40.000028
ORF1ab/nsp619L19LttGttA1818B.1.3510.000535
ORF1ab/nsp619L19FttGttT1717B.10.000156
ORF1ab/nsp619L19FttGttT1415AY.1020.000371
ORF1ab/nsp619L19FttGttC115AY.1020.000027
ORF1ab/nsp619L19FttGttT1212D.30.071006
ORF1ab/nsp619L19FttGttT1111AY.1210.001488
ORF1ab/nsp619L19FttGttT1111AY.250.000066
ORF1ab/nsp619L19LTtgCtg1011AY.330.000668
ORF1ab/nsp619L19LttGttA111AY.330.000067
ORF1ab/nsp619L19LttGttA1111B.1.36.360.006623
ORF1ab/nsp619L19FttGttT1111P.1.120.005324
ORF1ab/nsp619L19FttGttT99AY.690.00168
ORF1ab/nsp619L19FttGttT99AY.980.000711
ORF1ab/nsp619L19LttGttA89B.10.000073
ORF1ab/nsp619L19LTtgCtg19B.10.000009
ORF1ab/nsp619L19StTgtCg99B.1.1.70.000008
ORF1ab/nsp619L19FttGttT99B.1.1770.000119
ORF1ab/nsp619L19FttGttT99B.1.20.000079
ORF1ab/nsp619L19FttGttT88P.1.140.000382
ORF1ab/nsp619L19FttGttT77AY.200.000272
ORF1ab/nsp619L19LttGttA77AY.290.00011
ORF1ab/nsp619L19LttGttA56AY.1190.000177
ORF1ab/nsp619L19LTtgCtg16AY.1190.000035
ORF1ab/nsp619L19FttGttT66AY.4.20.00013
ORF1ab/nsp619L19FttGttT66AY.50.000124
ORF1ab/nsp619L19delTTG---66B.1.1.70.000005
ORF1ab/nsp619L19FttGttT55AY.1000.00023
ORF1ab/nsp619L19FttGttT45AY.230.000279
ORF1ab/nsp619L19FttGttC15AY.230.00007
ORF1ab/nsp619L19StTgtCg55AY.440.00003
ORF1ab/nsp619L19FttGttT55B.1.10.000091
ORF1ab/nsp619L19LttGttA45B.1.10.000073
ORF1ab/nsp619L19LTtgCtg15B.1.10.000018
ORF1ab/nsp619L19FttGttT55B.1.1.2140.000277
ORF1ab/nsp619L19LttGttA55B.1.1460.021186
ORF1ab/nsp619L19LttGttA55B.1.617.20.000019
ORF1ab/nsp619L19LTtgCtg44AY.1000.000184
ORF1ab/nsp619L19LttGttA44AY.4.50.00043
ORF1ab/nsp619L19StTgtCg44AY.430.000018
ORF1ab/nsp619L19FttGttT44B.1.3510.000119
ORF1ab/nsp619L19FttGttT44B.1.4290.000094
ORF1ab/nsp619L19LTtgCtg34D.20.000225
ORF1ab/nsp619L19LTtGCtT14D.20.000075
ORF1ab/nsp619L19FttGttT330.166667
ORF1ab/nsp619L19MTtgAtg33All0.000001
ORF1ab/nsp619L19VTtgGtg33All0.000001
ORF1ab/nsp619L19FttGttT33AY.1180.000188
ORF1ab/nsp619L19FttGttT33AY.39.10.000119
ORF1ab/nsp619L19delTTG---33AY.40.000005
ORF1ab/nsp619L19LttGttA33AY.440.000018
ORF1ab/nsp619L19FttGttT33AY.450.000365
ORF1ab/nsp619L19FttGttT33AY.60.000123
ORF1ab/nsp619L19StTgtCg33B.10.000027
ORF1ab/nsp619L19FttGttT33B.1.1.4130.02069
ORF1ab/nsp619L19FttGttT33B.1.4270.000151
ORF1ab/nsp619L19LTtgCtg220.111111
ORF1ab/nsp619L19FttGttT22AD.20.000438
ORF1ab/nsp619L19LttGttA12AY.1030.000006
ORF1ab/nsp619L19LTtGCtC12AY.1030.000006
ORF1ab/nsp619L19FttGttT22AY.1110.000366
ORF1ab/nsp619L19FttGttT22AY.1190.000071
ORF1ab/nsp619L19LttGttA12AY.230.00007
ORF1ab/nsp619L19LTtgCtg12AY.230.00007
ORF1ab/nsp619L19FttGttT22AY.23.10.000835
ORF1ab/nsp619L19FttGttT22AY.290.000032
ORF1ab/nsp619L19FttGttT22AY.29.10.000441
ORF1ab/nsp619L19FttGttT22AY.390.000049
ORF1ab/nsp619L19FttGttT22AY.540.000191
ORF1ab/nsp619L19FttGttT22AY.840.000875
ORF1ab/nsp619L19LttGttA22AY.910.001461
ORF1ab/nsp619L19FttGttT22B.1.1.2220.000408
ORF1ab/nsp619L19FttGttC12B.1.1.250.000569
ORF1ab/nsp619L19FttGttT12B.1.1.250.000569
ORF1ab/nsp619L19VTtgGtg22B.1.1.70.000002
ORF1ab/nsp619L19FttGttT22B.1.1.710.012121
ORF1ab/nsp619L19LttGttA12B.1.130.002375
ORF1ab/nsp619L19LTtgCtg12B.1.130.002375
ORF1ab/nsp619L19FttGttT22B.1.2210.000142
ORF1ab/nsp619L19FttGttT22B.1.258.110.000793
ORF1ab/nsp619L19FttGttT22B.1.258.170.000208
ORF1ab/nsp619L19LttGttA22B.1.4280.002041
ORF1ab/nsp619L19FttGttT22B.1.5640.000852
ORF1ab/nsp619L19StTgtCg22D.20.00015
ORF1ab/nsp619L19LttGttA22P.10.000032
ORF1ab/nsp619L19delTTG---22P.1.150.000465
ORF1ab/nsp619L19FttGttT22Q.80.00033
ORF1ab/nsp619L19MTtgAtg110.055556
ORF1ab/nsp619L19FttGttT11A0.000387
ORF1ab/nsp619L19PTTgCCg11All0
ORF1ab/nsp619L19XtTGtGA11All0
ORF1ab/nsp619L19QTTgCAg11All0
ORF1ab/nsp619L19WtTgtGg11All0
ORF1ab/nsp619L19FttGttT11AP.10.001502
ORF1ab/nsp619L19StTgtCg11AY.1000.000046
ORF1ab/nsp619L19StTgtCg11AY.1020.000027
ORF1ab/nsp619L19FttGttT11AY.1090.00074
ORF1ab/nsp619L19FttGttT11AY.1130.000142
ORF1ab/nsp619L19FttGttT11AY.1150.005208
ORF1ab/nsp619L19FttGttT11AY.1170.000085
ORF1ab/nsp619L19FttGttT11AY.1200.000037
ORF1ab/nsp619L19LttGttA11AY.1200.000037
ORF1ab/nsp619L19LttGttA11AY.1210.000135
ORF1ab/nsp619L19FttGttT11AY.140.000088
ORF1ab/nsp619L19FttGttT11AY.160.00038
ORF1ab/nsp619L19FttGttT11AY.16.10.00047
ORF1ab/nsp619L19LTtgCtg11AY.190.00114
ORF1ab/nsp619L19WtTgtGg11AY.20.000356
ORF1ab/nsp619L19LTtgCtg11AY.200.000039
ORF1ab/nsp619L19LttGttA11AY.250.000006
ORF1ab/nsp619L19StTgtCg11AY.250.000006
ORF1ab/nsp619L19VTtgGtg11AY.250.000006
ORF1ab/nsp619L19FttGttT11AY.260.000028
ORF1ab/nsp619L19delTTG---11AY.30.00001
ORF1ab/nsp619L19MTtgAtg11AY.30.00001
ORF1ab/nsp619L19FttGttT11AY.300.000396
ORF1ab/nsp619L19FttGttT11AY.330.000067
ORF1ab/nsp619L19FttGttT11AY.340.000097
ORF1ab/nsp619L19StTgtCg11AY.40.000002
ORF1ab/nsp619L19FttGttT11AY.4.2.10.000149
ORF1ab/nsp619L19FttGttT11AY.4.30.000842
ORF1ab/nsp619L19FttGttT11AY.4.40.000409
ORF1ab/nsp619L19FttGttT11AY.410.000294
ORF1ab/nsp619L19delTTG---11AY.430.000004
ORF1ab/nsp619L19LttGttA11AY.430.000004
ORF1ab/nsp619L19FttGttT11AY.460.000104
ORF1ab/nsp619L19FttGttT11AY.46.20.000635
ORF1ab/nsp619L19StTgtCg11AY.470.000031
ORF1ab/nsp619L19StTgtCg11AY.50.000021
ORF1ab/nsp619L19FttGttT11AY.520.000814
ORF1ab/nsp619L19MTtgAtg11AY.620.000436
ORF1ab/nsp619L19delTTG---11AY.660.00107
ORF1ab/nsp619L19FttGttT11AY.680.000274
ORF1ab/nsp619L19FttGttT11AY.730.000665
ORF1ab/nsp619L19FttGttT11AY.740.000116
ORF1ab/nsp619L19LttGttA11AY.750.000056
ORF1ab/nsp619L19FttGttT11AY.860.00083
ORF1ab/nsp619L19FttGttT11AY.9.20.000037
ORF1ab/nsp619L19FttGttT11AY.900.000684
ORF1ab/nsp619L19FttGttT11AY.910.00073
ORF1ab/nsp619L19FttGttT11AY.950.000761
ORF1ab/nsp619L19LttGttA11AY.980.000079
ORF1ab/nsp619L19LTtgCtg11AY.98.10.000048
ORF1ab/nsp619L19FttGttT11AY.99.20.000092
ORF1ab/nsp619L19LttGttA11AY.99.20.000092
ORF1ab/nsp619L19FttGttT11B0.000128
ORF1ab/nsp619L19QTTgCAg11B0.000128
ORF1ab/nsp619L19delTTG---11B.10.000009
ORF1ab/nsp619L19PTTgCCg11B.1.10.000018
ORF1ab/nsp619L19LttGttA11B.1.1.1230.017857
ORF1ab/nsp619L19LttGttA11B.1.1.1920.002309
ORF1ab/nsp619L19FttGttT11B.1.1.1920.002309
ORF1ab/nsp619L19LttGttA11B.1.1.1940.00495
ORF1ab/nsp619L19LttGttA11B.1.1.2140.000055
ORF1ab/nsp619L19delTTG---11B.1.1.2360.006897
ORF1ab/nsp619L19FttGttC11B.1.1.2690.001353
ORF1ab/nsp619L19LttGttA11B.1.1.3090.005848
ORF1ab/nsp619L19LTtgCtg11B.1.1.3110.000358
ORF1ab/nsp619L19FttGttT11B.1.1.3690.000446
ORF1ab/nsp619L19LTtgCtg11B.1.1.390.00051
ORF1ab/nsp619L19LTtgCtg11B.1.1.470.005348
ORF1ab/nsp619L19LttGttA11B.1.1.580.005376
ORF1ab/nsp619L19FttGttT11B.1.1110.001175
ORF1ab/nsp619L19FttGttT11B.1.1600.000031
ORF1ab/nsp619L19LttGttA11B.1.1770.000013
ORF1ab/nsp619L19delTTG---11B.1.177.150.000631
ORF1ab/nsp619L19FttGttT11B.1.177.320.00135
ORF1ab/nsp619L19delTTG---11B.1.177.40.000211
ORF1ab/nsp619L19FttGttT11B.1.177.540.000606
ORF1ab/nsp619L19FttGttT11B.1.177.600.000218
ORF1ab/nsp619L19FttGttT11B.1.177.70.000165
ORF1ab/nsp619L19LTtgCtg11B.1.177.730.000566
ORF1ab/nsp619L19LttGttA11B.1.177.810.000189
ORF1ab/nsp619L19FttGttT11B.1.177.870.000728
ORF1ab/nsp619L19delTTG---11B.1.177.90.001332
ORF1ab/nsp619L19LttGttA11B.1.20.000009
ORF1ab/nsp619L19StTgtCg11B.1.20.000009
ORF1ab/nsp619L19FttGttT11B.1.2340.000132
ORF1ab/nsp619L19FttGttT11B.1.3010.005917
ORF1ab/nsp619L19FttGttT11B.1.351.20.000303
ORF1ab/nsp619L19LttGttA11B.1.351.30.000876
ORF1ab/nsp619L19FttGttT11B.1.360.000146
ORF1ab/nsp619L19StTgtCg11B.1.36.170.000494
ORF1ab/nsp619L19FttGttC11B.1.3990.001934
ORF1ab/nsp619L19LTtgCtg11B.1.4220.000812
ORF1ab/nsp619L19StTgtCg11B.1.4290.000024
ORF1ab/nsp619L19StTgtCg11B.1.4590.004082
ORF1ab/nsp619L19FttGttT11B.1.4710.002732
ORF1ab/nsp619L19FttGttT11B.1.4740.001901
ORF1ab/nsp619L19LttGttA11B.1.5250.000113
ORF1ab/nsp619L19FttGttT11B.1.5260.000024
ORF1ab/nsp619L19StTgtCg11B.1.5410.004425
ORF1ab/nsp619L19StTgtCg11B.1.5490.007194
ORF1ab/nsp619L19FttGttT11B.1.5560.007519
ORF1ab/nsp619L19FttGttT11B.1.5750.000303
ORF1ab/nsp619L19FttGttT11B.1.5800.004065
ORF1ab/nsp619L19FttGttT11B.1.5950.000261
ORF1ab/nsp619L19delTTG---11B.1.5950.000261
ORF1ab/nsp619L19StTgtCg11B.1.5960.000087
ORF1ab/nsp619L19LttGttA11B.1.6090.000479
ORF1ab/nsp619L19StTgtCg11B.1.6090.000479
ORF1ab/nsp619L19StTgtCg11B.1.617.20.000004
ORF1ab/nsp619L19XtTGtGA11B.1.617.20.000004
ORF1ab/nsp619L19delTTG---11B.1.6210.000089
ORF1ab/nsp619L19FttGttT11B.1.6210.000089
ORF1ab/nsp619L19FttGttT11B.1.6230.000536
ORF1ab/nsp619L19FttGttT11B.30.000831
ORF1ab/nsp619L19FttGttT11C.160.00106
ORF1ab/nsp619L19FttGttT11C.360.000911
ORF1ab/nsp619L19LttGttA11C.370.000116
ORF1ab/nsp619L19FttGttT11D.20.000075
ORF1ab/nsp619L19delTTG---11N.40.004255
ORF1ab/nsp619L19FttGttT11P.1.150.000232
ORF1ab/nsp619L19FttGttT11P.1.70.000319
ORF1ab/nsp619L19delTTG---11Q.10.000126
ORF1ab/nsp619L19FttGttT11Q.10.000126