CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 187

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6187R187RR3756RsynagAagG673067110.99717711531-11533
ORF1ab/nsp6187R187RR3756RsynAgaCga6730150.0022288311531-11533
ORF1ab/nsp6187R187RR3756RsynAgACgG673020.00029717711531-11533
ORF1ab/nsp6187R187RR3756RsynAgACgT673010.00014858811531-11533
ORF1ab/nsp6187R187RR3756RsynAgACgC673010.00014858811531-11533
ORF1ab/nsp6187R187KR3756KnonsynaGaaAa64630.98437511531-11533
ORF1ab/nsp6187R187KR3756KnonsynaGAaAG6410.01562511531-11533
ORF1ab/nsp6187R187SR3756SnonsynagAagT53320.60377411531-11533
ORF1ab/nsp6187R187SR3756SnonsynagAagC53170.32075511531-11533
ORF1ab/nsp6187R187SR3756SnonsynAGATCC5320.037735811531-11533
ORF1ab/nsp6187R187SR3756SnonsynAGaTCa5320.037735811531-11533
ORF1ab/nsp6187R187delR3756deldelAGA---4949111531-11533
ORF1ab/nsp6187R187GR3756GnonsynAgaGga1919111531-11533
ORF1ab/nsp6187R187IR3756InonsynaGaaTa15130.86666711531-11533
ORF1ab/nsp6187R187IR3756InonsynaGAaTT1520.13333311531-11533
ORF1ab/nsp6187R187XR3756XnonsynAgaTga88111531-11533
ORF1ab/nsp6187R187del2R3756del2delAGa--a540.811531-11533
ORF1ab/nsp6187R187TR3756TnonsynaGaaCa530.611531-11533
ORF1ab/nsp6187R187TR3756TnonsynaGAaCC520.411531-11533
ORF1ab/nsp6187R187del2R3756del2delaGAa--510.211531-11533
ORF1ab/nsp6187R187CR3756CnonsynAgATgC430.7511531-11533
ORF1ab/nsp6187R187CR3756CnonsynAgATgT410.2511531-11533
ORF1ab/nsp6187R187QR3756QnonsynAGACAG210.511531-11533
ORF1ab/nsp6187R187QR3756QnonsynAGaCAa210.511531-11533
ORF1ab/nsp6187R187ER3756EnonsynAGaGAa11111531-11533
ORF1ab/nsp6187R187FR3756FnonsynAGATTT11111531-11533
ORF1ab/nsp6187R187LR3756LnonsynAGaTTa11111531-11533

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6187R187RagAagG67116730All0.001284
ORF1ab/nsp6187R187RAgaCga156730All0.000003
ORF1ab/nsp6187R187RAgACgG26730All0
ORF1ab/nsp6187R187RAgACgC16730All0
ORF1ab/nsp6187R187RAgACgT16730All0
ORF1ab/nsp6187R187RagAagG61786178B.1.1770.081349
ORF1ab/nsp6187R187RagAagG355355B.1.177.630.959459
ORF1ab/nsp6187R187KaGaaAa6364All0.000012
ORF1ab/nsp6187R187KaGAaAG164All0
ORF1ab/nsp6187R187SagAagT3253All0.000006
ORF1ab/nsp6187R187SagAagC1753All0.000003
ORF1ab/nsp6187R187SAGaTCa253All0
ORF1ab/nsp6187R187SAGATCC253All0
ORF1ab/nsp6187R187delAGA---4949All0.000009
ORF1ab/nsp6187R187RagAagG2828AY.260.000793
ORF1ab/nsp6187R187RagAagG2324B.10.000211
ORF1ab/nsp6187R187RAgaCga124B.10.000009
ORF1ab/nsp6187R187RagAagG2424P.10.000378
ORF1ab/nsp6187R187RagAagG2323B.1.1.70.000021
ORF1ab/nsp6187R187GAgaGga1919All0.000004
ORF1ab/nsp6187R187SagAagT1518AY.40.000023
ORF1ab/nsp6187R187SagAagC318AY.40.000005
ORF1ab/nsp6187R187IaGaaTa1315All0.000002
ORF1ab/nsp6187R187IaGAaTT215All0
ORF1ab/nsp6187R187RagAagG1215AY.40.000019
ORF1ab/nsp6187R187RAgaCga315AY.40.000005
ORF1ab/nsp6187R187delAGA---1414B.1.1.70.000013
ORF1ab/nsp6187R187RagAagG1111B.1.177.641
ORF1ab/nsp6187R187KaGaaAa1010AY.1020.000265
ORF1ab/nsp6187R187KaGaaAa99AY.1130.001282
ORF1ab/nsp6187R187SagAagT89AY.4.50.00086
ORF1ab/nsp6187R187SagAagC19AY.4.50.000107
ORF1ab/nsp6187R187RagAagG69B.1.617.20.000023
ORF1ab/nsp6187R187RAgaCga39B.1.617.20.000011
ORF1ab/nsp6187R187XAgaTga88All0.000002
ORF1ab/nsp6187R187SagAagC260.111111
ORF1ab/nsp6187R187SAGaTCa260.111111
ORF1ab/nsp6187R187SAGATCC260.111111
ORF1ab/nsp6187R187KaGaaAa66AY.40.000009
ORF1ab/nsp6187R187KaGaaAa66B.1.1.70.000005
ORF1ab/nsp6187R187del2AGa--a45All0.000001
ORF1ab/nsp6187R187TaGaaCa35All0.000001
ORF1ab/nsp6187R187TaGAaCC25All0
ORF1ab/nsp6187R187del2aGAa--15All0
ORF1ab/nsp6187R187delAGA---55B.10.000046
ORF1ab/nsp6187R187KaGaaAa55B.1.617.20.000019
ORF1ab/nsp6187R187KaGaaAa340.166667
ORF1ab/nsp6187R187TaGaaCa240.111111
ORF1ab/nsp6187R187TaGAaCC240.111111
ORF1ab/nsp6187R187KaGAaAG140.055556
ORF1ab/nsp6187R187CAgATgC34All0.000001
ORF1ab/nsp6187R187CAgATgT14All0
ORF1ab/nsp6187R187RagAagG44AY.1210.000541
ORF1ab/nsp6187R187KaGaaAa44AY.430.000018
ORF1ab/nsp6187R187RagAagG44AY.430.000018
ORF1ab/nsp6187R187RagAagG44B.1.20.000035
ORF1ab/nsp6187R187RagAagG44B.1.2580.000266
ORF1ab/nsp6187R187SagAagC44B.1.617.20.000015
ORF1ab/nsp6187R187RAgACgG130.055556
ORF1ab/nsp6187R187RAgaCga130.055556
ORF1ab/nsp6187R187RagAagG130.055556
ORF1ab/nsp6187R187GAgaGga33AY.40.000005
ORF1ab/nsp6187R187RAgACgC13AY.4.50.000107
ORF1ab/nsp6187R187RAgACgT13AY.4.50.000107
ORF1ab/nsp6187R187RAgaCga13AY.4.50.000107
ORF1ab/nsp6187R187IaGaaTa33B.10.000027
ORF1ab/nsp6187R187RagAagG33B.1.177.570.000843
ORF1ab/nsp6187R187RAgaCga33B.1.2400.000647
ORF1ab/nsp6187R187KaGaaAa33B.1.466.20.001174
ORF1ab/nsp6187R187XAgaTga220.111111
ORF1ab/nsp6187R187IaGAaTT220.111111
ORF1ab/nsp6187R187CAgATgC220.111111
ORF1ab/nsp6187R187QAGaCAa120.055556
ORF1ab/nsp6187R187QAGACAG120.055556
ORF1ab/nsp6187R187QAGaCAa12All0
ORF1ab/nsp6187R187QAGACAG12All0
ORF1ab/nsp6187R187KaGaaAa22AY.1190.000071
ORF1ab/nsp6187R187RagAagG22AY.120.000632
ORF1ab/nsp6187R187delAGA---22AY.40.000003
ORF1ab/nsp6187R187CAgATgT12AY.4.50.000107
ORF1ab/nsp6187R187CAgATgC12AY.4.50.000107
ORF1ab/nsp6187R187GAgaGga22AY.420.00008
ORF1ab/nsp6187R187delAGA---22AY.430.000009
ORF1ab/nsp6187R187delAGA---22AY.650.001066
ORF1ab/nsp6187R187delAGA---22AY.750.000112
ORF1ab/nsp6187R187GAgaGga22AY.9.20.000073
ORF1ab/nsp6187R187GAgaGga22B.10.000018
ORF1ab/nsp6187R187SagAagC12B.10.000009
ORF1ab/nsp6187R187SagAagT12B.10.000009
ORF1ab/nsp6187R187RagAagG22B.1.10.000036
ORF1ab/nsp6187R187GAgaGga22B.1.1.4340.000697
ORF1ab/nsp6187R187RagAagG22B.1.177.50.002484
ORF1ab/nsp6187R187RagAagG22B.1.177.60.001953
ORF1ab/nsp6187R187delAGA---22B.1.177.70.00033
ORF1ab/nsp6187R187SagAagC22B.1.4290.000047
ORF1ab/nsp6187R187KaGaaAa22B.1.5250.000226
ORF1ab/nsp6187R187delAGA---22B.1.617.20.000008
ORF1ab/nsp6187R187delAGA---22C.360.001821
ORF1ab/nsp6187R187delAGA---11A0.000387
ORF1ab/nsp6187R187XAgaTga11A.20.000662
ORF1ab/nsp6187R187RagAagG11AD.20.000219
ORF1ab/nsp6187R187EAGaGAa11All0
ORF1ab/nsp6187R187LAGaTTa11All0
ORF1ab/nsp6187R187FAGATTT11All0
ORF1ab/nsp6187R187delAGA---11AY.100.00053
ORF1ab/nsp6187R187SagAagC11AY.1000.000046
ORF1ab/nsp6187R187RagAagG11AY.1000.000046
ORF1ab/nsp6187R187RagAagG11AY.1030.000006
ORF1ab/nsp6187R187KaGaaAa11AY.1030.000006
ORF1ab/nsp6187R187SagAagC11AY.1030.000006
ORF1ab/nsp6187R187RAgaCga11AY.1190.000035
ORF1ab/nsp6187R187SagAagT11AY.1200.000037
ORF1ab/nsp6187R187KaGaaAa11AY.1210.000135
ORF1ab/nsp6187R187KaGaaAa11AY.20.000356
ORF1ab/nsp6187R187RagAagG11AY.200.000039
ORF1ab/nsp6187R187RagAagG11AY.250.000006
ORF1ab/nsp6187R187IaGaaTa11AY.270.000065
ORF1ab/nsp6187R187RagAagG11AY.30.00001
ORF1ab/nsp6187R187GAgaGga11AY.3.10.000085
ORF1ab/nsp6187R187RAgaCga11AY.34.10.00051
ORF1ab/nsp6187R187delAGA---11AY.390.000025
ORF1ab/nsp6187R187IaGaaTa11AY.390.000025
ORF1ab/nsp6187R187RagAagG11AY.4.20.000022
ORF1ab/nsp6187R187XAgaTga11AY.4.50.000107
ORF1ab/nsp6187R187delAGA---11AY.4.50.000107
ORF1ab/nsp6187R187del2aGAa--11AY.4.50.000107
ORF1ab/nsp6187R187KaGaaAa11AY.420.00004
ORF1ab/nsp6187R187XAgaTga11AY.430.000004
ORF1ab/nsp6187R187GAgaGga11AY.430.000004
ORF1ab/nsp6187R187del2AGa--a11AY.430.000004
ORF1ab/nsp6187R187EAGaGAa11AY.430.000004
ORF1ab/nsp6187R187IaGaaTa11AY.440.000006
ORF1ab/nsp6187R187RagAagG11AY.440.000006
ORF1ab/nsp6187R187KaGaaAa11AY.460.000104
ORF1ab/nsp6187R187delAGA---11AY.46.20.000635
ORF1ab/nsp6187R187IaGaaTa11AY.470.000031
ORF1ab/nsp6187R187KaGaaAa11AY.550.000917
ORF1ab/nsp6187R187RagAagG11AY.580.000907
ORF1ab/nsp6187R187SagAagT11AY.580.000907
ORF1ab/nsp6187R187KaGaaAa11AY.60.000041
ORF1ab/nsp6187R187delAGA---11AY.620.000436
ORF1ab/nsp6187R187delAGA---11AY.780.001541
ORF1ab/nsp6187R187RAgACgG11AY.840.000437
ORF1ab/nsp6187R187GAgaGga11AY.990.001049
ORF1ab/nsp6187R187RagAagG11B0.000128
ORF1ab/nsp6187R187del2AGa--a11B.10.000009
ORF1ab/nsp6187R187KaGaaAa11B.10.000009
ORF1ab/nsp6187R187LAGaTTa11B.10.000009
ORF1ab/nsp6187R187XAgaTga11B.10.000009
ORF1ab/nsp6187R187KaGaaAa11B.1.10.000018
ORF1ab/nsp6187R187XAgaTga11B.1.10.000018
ORF1ab/nsp6187R187RagAagG11B.1.1.2030.016949
ORF1ab/nsp6187R187RagAagG11B.1.1.2070.001182
ORF1ab/nsp6187R187SagAagT11B.1.1.2370.005405
ORF1ab/nsp6187R187delAGA---11B.1.1.3120.001912
ORF1ab/nsp6187R187RagAagG11B.1.1.3150.008475
ORF1ab/nsp6187R187SagAagT11B.1.1.3710.010417
ORF1ab/nsp6187R187KaGaaAa11B.1.1.4110.014706
ORF1ab/nsp6187R187SagAagC11B.1.1.5190.00004
ORF1ab/nsp6187R187TaGaaCa11B.1.1.70.000001
ORF1ab/nsp6187R187FAGATTT11B.1.1.70.000001
ORF1ab/nsp6187R187GAgaGga11B.1.1.70.000001
ORF1ab/nsp6187R187IaGaaTa11B.1.1.70.000001
ORF1ab/nsp6187R187SagAagT11B.1.1.70.000001
ORF1ab/nsp6187R187RagAagG11B.1.1600.000031
ORF1ab/nsp6187R187delAGA---11B.1.1610.017241
ORF1ab/nsp6187R187RagAagG11B.1.177.210.000076
ORF1ab/nsp6187R187RagAagG11B.1.177.620.001192
ORF1ab/nsp6187R187RagAagG11B.1.177.650.000665
ORF1ab/nsp6187R187GAgaGga11B.1.177.650.000665
ORF1ab/nsp6187R187delAGA---11B.1.177.760.002494
ORF1ab/nsp6187R187delAGA---11B.1.177.830.001481
ORF1ab/nsp6187R187delAGA---11B.1.177.90.001332
ORF1ab/nsp6187R187SagAagT11B.1.20.000009
ORF1ab/nsp6187R187IaGaaTa11B.1.20.000009
ORF1ab/nsp6187R187del2AGa--a11B.1.20.000009
ORF1ab/nsp6187R187del2AGa--a11B.1.2060.000816
ORF1ab/nsp6187R187RagAagG11B.1.2360.002053
ORF1ab/nsp6187R187GAgaGga11B.1.2380.014925
ORF1ab/nsp6187R187SagAagT11B.1.258.170.000104
ORF1ab/nsp6187R187IaGaaTa11B.1.258.170.000104
ORF1ab/nsp6187R187SagAagC11B.1.360.000146
ORF1ab/nsp6187R187KaGaaAa11B.1.4270.00005
ORF1ab/nsp6187R187RagAagG11B.1.4290.000024
ORF1ab/nsp6187R187IaGaaTa11B.1.4530.003236
ORF1ab/nsp6187R187RagAagG11B.1.4700.001404
ORF1ab/nsp6187R187delAGA---11B.1.5250.000113
ORF1ab/nsp6187R187RAgaCga11B.1.5260.000024
ORF1ab/nsp6187R187GAgaGga11B.1.5640.000426
ORF1ab/nsp6187R187KaGaaAa11B.1.5950.000261
ORF1ab/nsp6187R187RagAagG11B.1.5960.000087
ORF1ab/nsp6187R187XAgaTga11B.1.5960.000087
ORF1ab/nsp6187R187SagAagT11B.1.5990.00365
ORF1ab/nsp6187R187GAgaGga11B.1.617.20.000004
ORF1ab/nsp6187R187IaGaaTa11B.1.617.20.000004
ORF1ab/nsp6187R187delAGA---11C.170.055556
ORF1ab/nsp6187R187delAGA---11C.370.000116
ORF1ab/nsp6187R187IaGaaTa11D.20.000075
ORF1ab/nsp6187R187delAGA---11N.40.004255
ORF1ab/nsp6187R187RagAagG11P.20.000187
ORF1ab/nsp6187R187RagAagG11Q.80.000165
ORF1ab/nsp6187R187KaGaaAa11R.10.00009