CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 187 | R187R | R3756R | syn | agA | agG | 6730 | 6711 | 0.997177 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187R | R3756R | syn | Aga | Cga | 6730 | 15 | 0.00222883 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187R | R3756R | syn | AgA | CgG | 6730 | 2 | 0.000297177 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187R | R3756R | syn | AgA | CgT | 6730 | 1 | 0.000148588 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187R | R3756R | syn | AgA | CgC | 6730 | 1 | 0.000148588 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187K | R3756K | nonsyn | aGa | aAa | 64 | 63 | 0.984375 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187K | R3756K | nonsyn | aGA | aAG | 64 | 1 | 0.015625 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187S | R3756S | nonsyn | agA | agT | 53 | 32 | 0.603774 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187S | R3756S | nonsyn | agA | agC | 53 | 17 | 0.320755 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187S | R3756S | nonsyn | AGA | TCC | 53 | 2 | 0.0377358 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187S | R3756S | nonsyn | AGa | TCa | 53 | 2 | 0.0377358 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187del | R3756del | del | AGA | --- | 49 | 49 | 1 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187G | R3756G | nonsyn | Aga | Gga | 19 | 19 | 1 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187I | R3756I | nonsyn | aGa | aTa | 15 | 13 | 0.866667 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187I | R3756I | nonsyn | aGA | aTT | 15 | 2 | 0.133333 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187X | R3756X | nonsyn | Aga | Tga | 8 | 8 | 1 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187del2 | R3756del2 | del | AGa | --a | 5 | 4 | 0.8 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187T | R3756T | nonsyn | aGa | aCa | 5 | 3 | 0.6 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187T | R3756T | nonsyn | aGA | aCC | 5 | 2 | 0.4 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187del2 | R3756del2 | del | aGA | a-- | 5 | 1 | 0.2 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187C | R3756C | nonsyn | AgA | TgC | 4 | 3 | 0.75 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187C | R3756C | nonsyn | AgA | TgT | 4 | 1 | 0.25 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187Q | R3756Q | nonsyn | AGA | CAG | 2 | 1 | 0.5 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187Q | R3756Q | nonsyn | AGa | CAa | 2 | 1 | 0.5 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187E | R3756E | nonsyn | AGa | GAa | 1 | 1 | 1 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187F | R3756F | nonsyn | AGA | TTT | 1 | 1 | 1 | 11531-11533 |
ORF1ab/nsp6 | 187 | R187L | R3756L | nonsyn | AGa | TTa | 1 | 1 | 1 | 11531-11533 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 6711 | 6730 | All | 0.001284 |
ORF1ab/nsp6 | 187 | R187R | Aga | Cga | 15 | 6730 | All | 0.000003 |
ORF1ab/nsp6 | 187 | R187R | AgA | CgG | 2 | 6730 | All | 0 |
ORF1ab/nsp6 | 187 | R187R | AgA | CgC | 1 | 6730 | All | 0 |
ORF1ab/nsp6 | 187 | R187R | AgA | CgT | 1 | 6730 | All | 0 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 6178 | 6178 | B.1.177 | 0.081349 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 355 | 355 | B.1.177.63 | 0.959459 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 63 | 64 | All | 0.000012 |
ORF1ab/nsp6 | 187 | R187K | aGA | aAG | 1 | 64 | All | 0 |
ORF1ab/nsp6 | 187 | R187S | agA | agT | 32 | 53 | All | 0.000006 |
ORF1ab/nsp6 | 187 | R187S | agA | agC | 17 | 53 | All | 0.000003 |
ORF1ab/nsp6 | 187 | R187S | AGa | TCa | 2 | 53 | All | 0 |
ORF1ab/nsp6 | 187 | R187S | AGA | TCC | 2 | 53 | All | 0 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 49 | 49 | All | 0.000009 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 28 | 28 | AY.26 | 0.000793 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 23 | 24 | B.1 | 0.000211 |
ORF1ab/nsp6 | 187 | R187R | Aga | Cga | 1 | 24 | B.1 | 0.000009 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 24 | 24 | P.1 | 0.000378 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 19 | 19 | All | 0.000004 |
ORF1ab/nsp6 | 187 | R187S | agA | agT | 15 | 18 | AY.4 | 0.000023 |
ORF1ab/nsp6 | 187 | R187S | agA | agC | 3 | 18 | AY.4 | 0.000005 |
ORF1ab/nsp6 | 187 | R187I | aGa | aTa | 13 | 15 | All | 0.000002 |
ORF1ab/nsp6 | 187 | R187I | aGA | aTT | 2 | 15 | All | 0 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 12 | 15 | AY.4 | 0.000019 |
ORF1ab/nsp6 | 187 | R187R | Aga | Cga | 3 | 15 | AY.4 | 0.000005 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 11 | 11 | B.1.177.64 | 1 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 9 | 9 | AY.113 | 0.001282 |
ORF1ab/nsp6 | 187 | R187S | agA | agT | 8 | 9 | AY.4.5 | 0.00086 |
ORF1ab/nsp6 | 187 | R187S | agA | agC | 1 | 9 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 6 | 9 | B.1.617.2 | 0.000023 |
ORF1ab/nsp6 | 187 | R187R | Aga | Cga | 3 | 9 | B.1.617.2 | 0.000011 |
ORF1ab/nsp6 | 187 | R187X | Aga | Tga | 8 | 8 | All | 0.000002 |
ORF1ab/nsp6 | 187 | R187S | agA | agC | 2 | 6 | 0.111111 | |
ORF1ab/nsp6 | 187 | R187S | AGa | TCa | 2 | 6 | 0.111111 | |
ORF1ab/nsp6 | 187 | R187S | AGA | TCC | 2 | 6 | 0.111111 | |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp6 | 187 | R187del2 | AGa | --a | 4 | 5 | All | 0.000001 |
ORF1ab/nsp6 | 187 | R187T | aGa | aCa | 3 | 5 | All | 0.000001 |
ORF1ab/nsp6 | 187 | R187T | aGA | aCC | 2 | 5 | All | 0 |
ORF1ab/nsp6 | 187 | R187del2 | aGA | a-- | 1 | 5 | All | 0 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 3 | 4 | 0.166667 | |
ORF1ab/nsp6 | 187 | R187T | aGa | aCa | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 187 | R187T | aGA | aCC | 2 | 4 | 0.111111 | |
ORF1ab/nsp6 | 187 | R187K | aGA | aAG | 1 | 4 | 0.055556 | |
ORF1ab/nsp6 | 187 | R187C | AgA | TgC | 3 | 4 | All | 0.000001 |
ORF1ab/nsp6 | 187 | R187C | AgA | TgT | 1 | 4 | All | 0 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp6 | 187 | R187S | agA | agC | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp6 | 187 | R187R | AgA | CgG | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 187 | R187R | Aga | Cga | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp6 | 187 | R187R | AgA | CgC | 1 | 3 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 187 | R187R | AgA | CgT | 1 | 3 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 187 | R187R | Aga | Cga | 1 | 3 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 187 | R187I | aGa | aTa | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp6 | 187 | R187R | Aga | Cga | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp6 | 187 | R187X | Aga | Tga | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 187 | R187I | aGA | aTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 187 | R187C | AgA | TgC | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 187 | R187Q | AGa | CAa | 1 | 2 | 0.055556 | |
ORF1ab/nsp6 | 187 | R187Q | AGA | CAG | 1 | 2 | 0.055556 | |
ORF1ab/nsp6 | 187 | R187Q | AGa | CAa | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 187 | R187Q | AGA | CAG | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp6 | 187 | R187C | AgA | TgT | 1 | 2 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 187 | R187C | AgA | TgC | 1 | 2 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 187 | R187S | agA | agC | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp6 | 187 | R187S | agA | agT | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp6 | 187 | R187S | agA | agC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 187 | R187X | Aga | Tga | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp6 | 187 | R187E | AGa | GAa | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 187 | R187L | AGa | TTa | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 187 | R187F | AGA | TTT | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp6 | 187 | R187S | agA | agC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 187 | R187S | agA | agC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 187 | R187R | Aga | Cga | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp6 | 187 | R187S | agA | agT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 187 | R187I | aGa | aTa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp6 | 187 | R187R | Aga | Cga | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 187 | R187I | aGa | aTa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp6 | 187 | R187X | Aga | Tga | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 187 | R187del2 | aGA | a-- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 187 | R187X | Aga | Tga | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 187 | R187del2 | AGa | --a | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 187 | R187E | AGa | GAa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 187 | R187I | aGa | aTa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp6 | 187 | R187I | aGa | aTa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp6 | 187 | R187S | agA | agT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp6 | 187 | R187R | AgA | CgG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 187 | R187del2 | AGa | --a | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 187 | R187L | AGa | TTa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 187 | R187X | Aga | Tga | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 187 | R187X | Aga | Tga | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | B.1.1.203 | 0.016949 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp6 | 187 | R187S | agA | agT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp6 | 187 | R187S | agA | agT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp6 | 187 | R187S | agA | agC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp6 | 187 | R187T | aGa | aCa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 187 | R187F | AGA | TTT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 187 | R187I | aGa | aTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 187 | R187S | agA | agT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp6 | 187 | R187S | agA | agT | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 187 | R187I | aGa | aTa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 187 | R187del2 | AGa | --a | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 187 | R187del2 | AGa | --a | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 1 | 1 | B.1.238 | 0.014925 |
ORF1ab/nsp6 | 187 | R187S | agA | agT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp6 | 187 | R187I | aGa | aTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp6 | 187 | R187S | agA | agC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 187 | R187I | aGa | aTa | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 187 | R187R | Aga | Cga | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 187 | R187X | Aga | Tga | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 187 | R187S | agA | agT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp6 | 187 | R187G | Aga | Gga | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 187 | R187I | aGa | aTa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 187 | R187I | aGa | aTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 187 | R187del | AGA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp6 | 187 | R187R | agA | agG | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp6 | 187 | R187K | aGa | aAa | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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