CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 181 | T181I | T3750I | nonsyn | aCt | aTt | 239959 | 239955 | 0.999983 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181I | T3750I | nonsyn | aCT | aTA | 239959 | 2 | 0.00000833476 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181I | T3750I | nonsyn | aCT | aTC | 239959 | 2 | 0.00000833476 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181T | T3750T | syn | acT | acC | 195 | 147 | 0.753846 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181T | T3750T | syn | acT | acA | 195 | 35 | 0.179487 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181T | T3750T | syn | acT | acG | 195 | 13 | 0.0666667 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181A | T3750A | nonsyn | Act | Gct | 176 | 176 | 1 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181del | T3750del | del | ACT | --- | 90 | 90 | 1 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181S | T3750S | nonsyn | aCt | aGt | 19 | 11 | 0.578947 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181S | T3750S | nonsyn | Act | Tct | 19 | 6 | 0.315789 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181S | T3750S | nonsyn | AcT | TcG | 19 | 2 | 0.105263 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181V | T3750V | nonsyn | ACt | GTt | 16 | 16 | 1 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181del1 | T3750del1 | del | aCt | a-t | 10 | 8 | 0.8 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181del1 | T3750del1 | del | acT | ac- | 10 | 2 | 0.2 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181N | T3750N | nonsyn | aCt | aAt | 6 | 5 | 0.833333 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181N | T3750N | nonsyn | aCT | aAC | 6 | 1 | 0.166667 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181R | T3750R | nonsyn | aCT | aGG | 3 | 3 | 1 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181K | T3750K | nonsyn | aCT | aAA | 3 | 3 | 1 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181C | T3750C | nonsyn | ACt | TGt | 3 | 3 | 1 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181L | T3750L | nonsyn | ACt | CTt | 3 | 2 | 0.666667 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181L | T3750L | nonsyn | ACT | CTC | 3 | 1 | 0.333333 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181W | T3750W | nonsyn | ACT | TGG | 2 | 2 | 1 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181P | T3750P | nonsyn | AcT | CcC | 2 | 1 | 0.5 | 11513-11515 |
ORF1ab/nsp6 | 181 | T181P | T3750P | nonsyn | Act | Cct | 2 | 1 | 0.5 | 11513-11515 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 239955 | 239959 | All | 0.045894 |
ORF1ab/nsp6 | 181 | T181I | aCT | aTC | 2 | 239959 | All | 0 |
ORF1ab/nsp6 | 181 | T181I | aCT | aTA | 2 | 239959 | All | 0 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 34825 | 34827 | AY.26 | 0.985902 |
ORF1ab/nsp6 | 181 | T181I | aCT | aTA | 2 | 34827 | AY.26 | 0.000057 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 30924 | 30924 | AY.47 | 0.961896 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 22903 | 22903 | AY.9.2 | 0.841218 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 16472 | 16472 | AY.75 | 0.922801 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 15419 | 15420 | AY.27 | 0.997929 |
ORF1ab/nsp6 | 181 | T181I | aCT | aTC | 1 | 15420 | AY.27 | 0.000065 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 14722 | 14722 | AY.9 | 0.995133 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 11668 | 11668 | AY.9.1 | 0.976892 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 11093 | 11093 | B.1.617.2 | 0.04177 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 9395 | 9395 | AY.61 | 0.984388 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 8248 | 8248 | AY.74 | 0.953857 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 5168 | 5168 | AY.69 | 0.964719 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 5081 | 5081 | AY.75.1 | 0.916156 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4568 | 4568 | AY.70 | 0.95246 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3287 | 3287 | B.1.575 | 0.997269 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2938 | 2938 | AY.37 | 0.928571 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2798 | 2798 | AY.68 | 0.765946 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2796 | 2796 | AY.2 | 0.995726 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2454 | 2454 | AY.63 | 0.949323 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2238 | 2238 | AY.24 | 0.964655 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2033 | 2033 | B.1.1.7 | 0.00182 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1993 | 1993 | AY.71 | 0.946793 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1974 | 1974 | AY.62 | 0.860131 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1888 | 1888 | AY.67 | 0.876509 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1672 | 1672 | AY.10 | 0.886063 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1619 | 1619 | AY.65 | 0.863006 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1590 | 1590 | AY.38 | 0.793809 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1451 | 1451 | AY.64 | 0.86369 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1436 | 1436 | AY.59 | 0.760593 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1415 | 1415 | AY.57 | 0.928478 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 991 | 991 | AY.60 | 0.929644 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 865 | 865 | AY.66 | 0.925134 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 847 | 847 | AY.73 | 0.56354 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 777 | 777 | AY.58 | 0.705082 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 763 | 763 | AY.44 | 0.004644 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 686 | 686 | AY.72 | 0.933333 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 683 | 683 | AY.11 | 0.914324 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 548 | 548 | AY.43 | 0.002428 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 542 | 542 | B.1.2 | 0.004773 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 506 | 506 | AY.9.2.1 | 1 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 501 | 501 | AY.55 | 0.459633 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 478 | 478 | AY.28 | 0.903592 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 411 | 411 | AY.56 | 0.659711 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 397 | 397 | B.1 | 0.003636 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 384 | 384 | B.1.575.1 | 0.936585 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 346 | 346 | AY.16.1 | 0.162594 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 333 | 333 | AY.13 | 0.053606 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 257 | 257 | AY.4 | 0.0004 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 253 | 253 | AY.25 | 0.001522 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 224 | 224 | AY.39 | 0.005535 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 216 | 216 | AY.103 | 0.001341 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 209 | 209 | B.1.1 | 0.003791 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 208 | 208 | B.1.575.2 | 1 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 202 | 202 | AY.120 | 0.00751 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 196 | 196 | AY.19 | 0.223489 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 147 | 195 | All | 0.000028 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 35 | 195 | All | 0.000007 |
ORF1ab/nsp6 | 181 | T181T | acT | acG | 13 | 195 | All | 0.000002 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 176 | 176 | All | 0.000034 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 157 | 157 | P.1 | 0.002473 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 144 | 144 | AY.5 | 0.002973 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 135 | 135 | AY.20 | 0.005247 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 125 | 125 | AY.102 | 0.003314 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 125 | 125 | AY.3 | 0.001243 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 111 | 111 | AY.48 | 0.051628 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 104 | 104 | B.1.36.12 | 1 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 96 | 96 | B.1.429 | 0.002259 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 92 | 92 | AY.113 | 0.0131 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 90 | 90 | All | 0.000017 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 85 | 85 | B.1.177 | 0.001119 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 84 | 84 | B.1.526 | 0.001974 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 83 | 83 | AY.44 | 0.000505 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 82 | 82 | AY.110 | 0.00924 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 76 | 76 | AY.52 | 0.061889 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 75 | 75 | AY.54 | 0.007151 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 67 | 67 | AY.117 | 0.005663 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 64 | 64 | B.1.1.222 | 0.013056 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 60 | 60 | AY.45 | 0.007301 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 53 | 53 | AY.118 | 0.00332 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 52 | 52 | AY.16 | 0.019742 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 52 | 52 | AY.98.1 | 0.002518 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 48 | 48 | AY.120.2 | 0.061697 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 48 | 48 | B.1.349 | 0.03431 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 46 | 46 | AY.23 | 0.003208 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 46 | 46 | B.1.351 | 0.001367 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 45 | 45 | AY.4.2 | 0.000976 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 25 | 45 | B.1.1.7 | 0.000022 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 20 | 45 | B.1.1.7 | 0.000018 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 44 | 44 | B.1.160 | 0.001372 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 43 | 43 | AY.100 | 0.001978 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 43 | 43 | AY.121 | 0.005819 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 43 | 43 | B.1.1.318 | 0.012975 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 40 | 40 | AY.32 | 0.021299 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 39 | 39 | AY.21 | 0.074004 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 39 | 39 | AY.46.2 | 0.024778 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 38 | 38 | B.1.1.277 | 0.028832 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 38 | 38 | B.1.1.328 | 0.644068 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 38 | 38 | B.1.595 | 0.009916 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 37 | 37 | B.1.2 | 0.000326 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 36 | 36 | AY.105 | 0.023151 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 35 | 35 | AY.39.1 | 0.001386 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 35 | 35 | AY.98 | 0.002765 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 34 | 34 | B.1.221 | 0.002415 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 33 | 33 | AY.4.2.1 | 0.004917 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 32 | 32 | AY.50 | 0.02558 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 32 | 32 | AY.93 | 0.008738 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 31 | 31 | B.1.243 | 0.002157 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 29 | 29 | AY.29 | 0.000457 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 27 | 27 | AC.1 | 1 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 27 | 27 | AY.77 | 0.03044 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 27 | 27 | B.1.258 | 0.001797 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 26 | 26 | AY.119 | 0.000918 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 26 | 26 | AY.5.3 | 0.008772 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 26 | 26 | B | 0.003323 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 26 | 26 | B.1.1.519 | 0.001032 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 25 | 25 | AY.46 | 0.002602 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 24 | 24 | B.1.466 | 0.55814 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 23 | 23 | B.1.525 | 0.002603 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 22 | 22 | A.2.5 | 0.010978 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 20 | 20 | AY.15 | 0.044444 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 20 | 20 | AY.33 | 0.001336 |
ORF1ab/nsp6 | 181 | T181S | aCt | aGt | 11 | 19 | All | 0.000002 |
ORF1ab/nsp6 | 181 | T181S | Act | Tct | 6 | 19 | All | 0.000001 |
ORF1ab/nsp6 | 181 | T181S | AcT | TcG | 2 | 19 | All | 0 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 19 | 19 | AY.91 | 0.013879 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 18 | 18 | B.1.427 | 0.000909 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 18 | 18 | P.1.7 | 0.005747 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 17 | 17 | AY.107 | 0.007922 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 17 | 17 | AY.46.6 | 0.001228 |
ORF1ab/nsp6 | 181 | T181V | ACt | GTt | 16 | 16 | All | 0.000003 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 16 | 16 | AY.53 | 0.0046 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 16 | 16 | AY.86 | 0.013278 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 16 | 16 | C.16 | 0.016967 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 15 | 15 | AY.1 | 0.005936 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 13 | 14 | AY.4 | 0.00002 |
ORF1ab/nsp6 | 181 | T181T | acT | acG | 1 | 14 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 14 | 14 | AY.88 | 0.012378 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 13 | 13 | AY.114 | 0.003004 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 13 | 13 | AY.116 | 0.003728 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 13 | 13 | AY.46.5 | 0.002579 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 12 | 12 | AY.106 | 0.004019 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 12 | 12 | AY.99.2 | 0.001106 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 12 | 12 | B.1.1.311 | 0.004298 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 11 | 12 | B.1.160 | 0.000343 |
ORF1ab/nsp6 | 181 | T181I | aCT | aTC | 1 | 12 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 12 | 12 | B.1.177.81 | 0.002272 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 12 | 12 | B.1.36 | 0.001751 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 12 | 12 | P.1.12 | 0.005808 |
ORF1ab/nsp6 | 181 | T181V | ACt | GTt | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 11 | 11 | AY.90 | 0.007529 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 11 | 11 | B.1.1.216 | 0.009795 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 11 | 11 | B.1.1.416 | 0.009955 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 11 | 11 | B.1.617.1 | 0.001419 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 11 | 11 | P.1.14 | 0.000526 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 10 | 10 | AE.8 | 0.00489 |
ORF1ab/nsp6 | 181 | T181del1 | aCt | a-t | 8 | 10 | All | 0.000002 |
ORF1ab/nsp6 | 181 | T181del1 | acT | ac- | 2 | 10 | All | 0 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 10 | 10 | AY.108 | 0.011025 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 10 | 10 | AY.34.1 | 0.005099 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 10 | 10 | AY.46.1 | 0.010267 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 10 | 10 | AY.92 | 0.002873 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 10 | 10 | B.1.1.405 | 0.833333 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 10 | 10 | B.1.1.464 | 0.014728 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 10 | 10 | B.1.612 | 0.026525 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 10 | 10 | N.5 | 0.017668 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 9 | 9 | AY.40 | 0.008679 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 9 | 9 | B.1.1.33 | 0.003788 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 9 | 9 | B.1.462 | 0.065217 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 9 | 9 | B.1.509 | 0.007792 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 8 | 9 | B.1.617.2 | 0.00003 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 1 | 9 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 8 | 8 | AY.12 | 0.002528 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 8 | 8 | AY.87 | 0.006661 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 8 | 8 | P.1.17 | 0.001294 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 7 | 7 | AY.81 | 0.013944 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 7 | 7 | AY.95 | 0.005327 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 4 | 7 | B.1 | 0.000037 |
ORF1ab/nsp6 | 181 | T181T | acT | acG | 2 | 7 | B.1 | 0.000018 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 1 | 7 | B.1 | 0.000009 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 7 | 7 | B.1.1.135 | 0.032864 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 7 | 7 | B.1.1.50 | 0.004752 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 7 | 7 | B.1.177.21 | 0.000535 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 7 | 7 | B.1.214 | 0.025641 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 7 | 7 | B.1.22.1 | 0.21875 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 7 | 7 | B.1.36.29 | 0.003621 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 7 | 7 | B.1.448 | 0.018373 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 7 | 7 | B.1.623 | 0.003755 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 7 | 7 | Q.1 | 0.000884 |
ORF1ab/nsp6 | 181 | T181S | Act | Tct | 2 | 6 | 0.111111 | |
ORF1ab/nsp6 | 181 | T181S | AcT | TcG | 2 | 6 | 0.111111 | |
ORF1ab/nsp6 | 181 | T181S | aCt | aGt | 2 | 6 | 0.111111 | |
ORF1ab/nsp6 | 181 | T181N | aCt | aAt | 5 | 6 | All | 0.000001 |
ORF1ab/nsp6 | 181 | T181N | aCT | aAC | 1 | 6 | All | 0 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 6 | 6 | AY.109 | 0.004438 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 6 | 6 | B.1.1.269 | 0.008119 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 6 | 6 | B.1.177.75 | 0.006243 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 6 | 6 | B.1.241 | 0.00487 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 6 | 6 | B.1.367 | 0.004754 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 6 | 6 | P.1.2 | 0.006936 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 6 | 6 | V.1 | 0.136364 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 5 | 5 | AY.85 | 0.002136 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 5 | 5 | B.1.1.232 | 0.009074 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 5 | 5 | B.1.189 | 0.021459 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 5 | 5 | B.1.351.2 | 0.001513 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 5 | 5 | B.1.400 | 0.002145 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 5 | 5 | B.1.634 | 0.017123 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp6 | 181 | T181N | aCt | aAt | 3 | 4 | 0.166667 | |
ORF1ab/nsp6 | 181 | T181N | aCT | aAC | 1 | 4 | 0.055556 | |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4 | 4 | A.27 | 0.006623 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4 | 4 | AY.49 | 0.01278 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4 | 4 | B.1.1.192 | 0.009238 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4 | 4 | B.1.604 | 0.068966 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4 | 4 | B.1.619 | 0.003484 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp6 | 181 | T181T | acT | acG | 2 | 3 | 0.111111 | |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 3 | 0.055556 | |
ORF1ab/nsp6 | 181 | T181C | ACt | TGt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp6 | 181 | T181K | aCT | aAA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp6 | 181 | T181R | aCT | aGG | 3 | 3 | All | 0.000001 |
ORF1ab/nsp6 | 181 | T181L | ACt | CTt | 2 | 3 | All | 0 |
ORF1ab/nsp6 | 181 | T181L | ACT | CTC | 1 | 3 | All | 0 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp6 | 181 | T181T | acT | acG | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | AY.82 | 0.004071 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | AY.94 | 0.001328 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | B.1.177.54 | 0.001819 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | B.1.177.69 | 0.004451 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | B.1.36.36 | 0.001806 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | B.1.549 | 0.021583 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | B.1.617.3 | 0.008955 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp6 | 181 | T181T | acT | acG | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | N.9 | 0.017857 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp6 | 181 | T181R | aCT | aGG | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 181 | T181C | ACt | TGt | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 181 | T181W | ACT | TGG | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 181 | T181W | ACT | TGG | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 181 | T181P | AcT | CcC | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 181 | T181P | Act | Cct | 1 | 2 | All | 0 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | AY.17 | 0.016393 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | AY.22 | 0.004184 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | AY.39.2 | 0.003082 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp6 | 181 | T181S | Act | Tct | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp6 | 181 | T181L | ACt | CTt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp6 | 181 | T181S | aCt | aGt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 181 | T181del1 | aCt | a-t | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp6 | 181 | T181del1 | acT | ac- | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.1.424 | 0.090909 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp6 | 181 | T181S | aCt | aGt | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp6 | 181 | T181del1 | aCt | a-t | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.541 | 0.00885 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.543 | 0.02 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.550 | 0.027397 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.610 | 0.007092 |
ORF1ab/nsp6 | 181 | T181del1 | aCt | a-t | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AE.1 | 0.011364 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp6 | 181 | T181del1 | aCt | a-t | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 181 | T181V | ACt | GTt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 181 | T181S | Act | Tct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 181 | T181C | ACt | TGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 181 | T181del1 | acT | ac- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 181 | T181S | Act | Tct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp6 | 181 | T181V | ACt | GTt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp6 | 181 | T181V | ACt | GTt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp6 | 181 | T181K | aCT | aAA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp6 | 181 | T181del1 | aCt | a-t | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp6 | 181 | T181S | aCt | aGt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp6 | 181 | T181L | ACT | CTC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp6 | 181 | T181S | aCt | aGt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp6 | 181 | T181P | Act | Cct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 181 | T181R | aCT | aGG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 181 | T181N | aCt | aAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 181 | T181K | aCT | aAA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp6 | 181 | T181T | acT | acG | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.407 | 0.041667 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp6 | 181 | T181T | acT | acG | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.453 | 0.008475 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.48 | 0.002874 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp6 | 181 | T181P | AcT | CcC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 181 | T181S | aCt | aGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 181 | T181N | aCt | aAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp6 | 181 | T181S | aCt | aGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.208 | 0.04 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.227 | 0.047619 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.334 | 0.018182 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.343 | 0.020833 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp6 | 181 | T181S | aCt | aGt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 181 | T181A | Act | Gct | 1 | 1 | B.1.601 | 0.030303 |
ORF1ab/nsp6 | 181 | T181del1 | aCt | a-t | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp6 | 181 | T181K | aCT | aAA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | B.26 | 0.014706 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | C.6 | 0.037037 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 181 | T181T | acT | acA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 181 | T181V | ACt | GTt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 181 | T181I | aCt | aTt | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp6 | 181 | T181T | acT | acC | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp6 | 181 | T181V | ACt | GTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp6 | 181 | T181del | ACT | --- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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